Wall clock time and date at job start Wed Apr 1 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41375 * 126.80265 * 2 1 4 4 C 1.35454 * 103.98603 * 180.16439 * 3 2 1 5 5 C 1.50702 * 126.77884 * 179.91111 * 4 3 2 6 6 C 1.50698 * 115.54529 * 330.04651 * 5 4 3 7 7 O 1.21289 * 120.00124 * 125.67875 * 6 5 4 8 8 N 1.34779 * 120.00416 * 305.67668 * 6 5 4 9 9 C 1.46195 * 120.01531 * 354.41538 * 8 6 5 10 10 C 1.53410 * 110.06059 * 292.71185 * 9 8 6 11 11 C 1.53438 * 108.66512 * 316.64150 * 10 9 8 12 12 C 1.53117 * 109.34413 * 287.54898 * 11 10 9 13 13 C 1.52475 * 109.67307 * 77.03192 * 12 11 10 14 14 C 1.53496 * 109.14633 * 43.92896 * 13 12 11 15 15 H 1.09001 * 109.63573 * 5.68705 * 14 13 12 16 16 N 1.46505 * 109.63652 * 126.09057 * 14 13 12 17 17 C 1.36926 * 120.00043 * 274.99838 * 16 14 13 18 18 H 1.08007 * 120.00452 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00065 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00276 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47383 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47186 * 120.00557 * 21 19 17 24 24 H 1.48495 * 109.47640 * 240.00674 * 21 19 17 25 25 C 1.47136 * 120.18875 * 174.28736 * 8 6 5 26 26 C 1.52990 * 117.50178 * 115.71758 * 5 4 3 27 27 C 1.52999 * 117.49984 * 184.38052 * 5 4 3 28 28 O 1.34047 * 106.44302 * 359.64544 * 4 3 2 29 29 N 1.20919 * 111.56632 * 0.23978 * 28 4 3 30 30 H 1.09005 * 109.47101 * 265.25685 * 1 2 3 31 31 H 1.09005 * 109.47205 * 25.25593 * 1 2 3 32 32 H 1.09003 * 109.47200 * 145.25977 * 1 2 3 33 33 H 1.07998 * 128.00852 * 0.07575 * 3 2 1 34 34 H 1.09001 * 109.23290 * 172.63342 * 9 8 6 35 35 H 1.09002 * 109.56318 * 52.99667 * 9 8 6 36 36 H 1.09003 * 109.63730 * 196.83624 * 10 9 8 37 37 H 1.09010 * 109.63216 * 76.43969 * 10 9 8 38 38 H 1.09000 * 109.49251 * 47.50940 * 11 10 9 39 39 H 1.08997 * 109.49358 * 167.56553 * 11 10 9 40 40 H 1.09001 * 109.44208 * 197.09598 * 12 11 10 41 41 H 1.09004 * 109.44005 * 317.01375 * 12 11 10 42 42 H 1.08996 * 109.52314 * 163.82454 * 13 12 11 43 43 H 1.08999 * 109.52485 * 284.02904 * 13 12 11 44 44 H 0.97000 * 119.99452 * 95.00132 * 16 14 13 45 45 H 0.96999 * 119.99549 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.84456 * 348.37550 * 25 8 6 47 47 H 1.08996 * 109.90542 * 227.41639 * 25 8 6 48 48 H 1.08998 * 117.50287 * 215.00364 * 26 5 4 49 49 H 1.09008 * 117.50028 * 0.02562 * 26 5 4 50 50 H 1.09002 * 117.49551 * 359.97015 * 27 5 4 51 51 H 1.08994 * 117.50065 * 144.99099 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6067 -0.0038 5 6 4.9022 1.3694 -0.0073 6 6 4.8645 2.7146 -0.6857 7 8 5.2288 3.7054 -0.0885 8 7 4.4260 2.8167 -1.9561 9 6 4.1026 1.6111 -2.7172 10 6 5.3779 0.8034 -2.9905 11 6 6.4910 1.7713 -3.4130 12 6 6.2093 2.2812 -4.8290 13 6 5.1173 3.3444 -4.7840 14 6 5.3929 4.2998 -3.6147 15 1 6.3520 4.0539 -3.1589 16 7 5.4196 5.6808 -4.1031 17 6 6.5741 6.2001 -4.6252 18 1 7.4649 5.5916 -4.6773 19 6 6.5993 7.5084 -5.0884 20 7 5.5136 8.2499 -5.0254 21 14 8.1743 8.2171 -5.8000 22 1 9.2438 7.1878 -5.7575 23 1 7.9402 8.6293 -7.2074 24 1 8.5911 9.3976 -5.0014 25 6 4.2684 4.1397 -2.5803 26 6 5.8131 1.2188 1.2126 27 6 6.1960 0.5599 -0.1150 28 8 3.4537 -0.7254 0.0022 29 7 2.2867 -1.0423 0.0043 30 1 -0.3633 -0.0850 1.0242 31 1 -0.3634 0.9295 -0.4385 32 1 -0.3634 -0.8445 -0.5856 33 1 2.0709 2.1742 0.0011 34 1 3.6456 1.8965 -3.6648 35 1 3.4015 0.9986 -2.1503 36 1 5.1930 0.0863 -3.7903 37 1 5.6770 0.2739 -2.0858 38 1 6.5218 2.6140 -2.7224 39 1 7.4495 1.2526 -3.3968 40 1 7.1189 2.7128 -5.2468 41 1 5.8811 1.4512 -5.4548 42 1 5.1153 3.9043 -5.7191 43 1 4.1484 2.8656 -4.6427 44 1 4.6195 6.2272 -4.0566 45 1 5.5313 9.1642 -5.3488 46 1 4.3494 4.9186 -1.8221 47 1 3.2991 4.2038 -3.0745 48 1 6.3851 2.0925 1.5246 49 1 5.4725 0.5676 2.0177 50 1 6.1071 -0.5243 -0.1827 51 1 7.0200 1.0003 -0.6764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088368868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:39 Heat of formation + Delta-G solvation = 70.876769 kcal Electronic energy + Delta-G solvation = -33022.407791 eV Core-core repulsion = 28926.634458 eV Total energy + Delta-G solvation = -4095.773333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.03124 -41.97752 -39.40141 -37.85028 -36.47719 -35.79315 -35.06338 -33.85625 -32.55235 -31.20096 -29.62242 -28.89361 -27.97544 -26.45012 -25.00213 -24.30156 -24.12191 -23.21192 -22.56606 -21.53147 -20.64677 -19.71432 -19.22001 -18.74910 -18.47341 -17.61559 -17.44165 -16.97206 -16.44519 -16.17275 -15.99526 -15.69034 -15.26164 -15.21609 -14.83621 -14.68091 -14.37660 -14.26550 -14.20182 -13.93583 -13.78896 -13.55439 -13.27876 -13.23561 -12.90652 -12.89555 -12.69801 -12.57358 -12.46907 -12.35082 -12.20704 -12.11492 -11.91406 -11.74208 -11.69932 -11.53982 -11.47957 -10.99451 -10.97426 -10.85192 -10.73105 -10.15069 -9.67564 -8.96922 -7.94063 -5.21750 0.31932 1.16710 1.21737 1.45033 1.46174 1.55416 1.71741 2.05794 2.56455 2.64946 3.15337 3.21399 3.32617 3.39597 3.65252 3.77332 3.84942 3.92077 3.97852 4.05106 4.08684 4.09295 4.22585 4.26137 4.35533 4.45549 4.49506 4.58126 4.62364 4.63242 4.66314 4.68628 4.76362 4.80767 4.85018 4.87471 4.92792 4.97299 5.07151 5.10808 5.16182 5.22142 5.23585 5.32815 5.36384 5.49818 5.53845 5.62359 5.70749 6.28687 6.32511 7.02923 7.20734 7.34272 8.09852 8.32611 9.29496 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.003076 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.448573 B = 9100.428792 C = 9285.947741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 C -0.231 4.231 4 C 0.026 3.974 5 C -0.102 4.102 6 C 0.558 3.442 7 O -0.570 6.570 8 N -0.582 5.582 9 C 0.094 3.906 10 C -0.139 4.139 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.138 4.138 14 C 0.161 3.839 15 H 0.047 0.953 16 N -0.735 5.735 17 C -0.228 4.228 18 H 0.070 0.930 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.296 1.296 25 C 0.115 3.885 26 C -0.125 4.125 27 C -0.124 4.124 28 O 0.102 5.898 29 N -0.384 5.384 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.127 0.873 50 H 0.141 0.859 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -23.696 9.830 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C -0.252 4.252 4 C -0.038 4.038 5 C -0.107 4.107 6 C 0.345 3.655 7 O -0.449 6.449 8 N -0.312 5.312 9 C -0.027 4.027 10 C -0.177 4.177 11 C -0.165 4.165 12 C -0.146 4.146 13 C -0.178 4.178 14 C 0.052 3.948 15 H 0.065 0.935 16 N -0.375 5.375 17 C -0.360 4.360 18 H 0.088 0.912 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.219 1.219 24 H -0.223 1.223 25 C -0.008 4.008 26 C -0.162 4.162 27 C -0.161 4.161 28 O 0.037 5.963 29 N -0.091 5.091 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.146 0.854 50 H 0.159 0.841 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.388 -24.499 10.074 27.249 hybrid contribution 0.345 2.371 -0.628 2.477 sum -6.044 -22.128 9.446 24.808 Atomic orbital electron populations 1.20333 0.83811 1.04933 1.04411 1.23993 1.00360 0.87893 1.01211 1.22452 0.91165 1.01492 1.10136 1.22707 0.95312 0.83704 1.02048 1.19254 0.88856 0.93785 1.08788 1.19324 0.76408 0.88405 0.81355 1.90744 1.49075 1.39157 1.65912 1.47788 1.64253 1.07351 1.11846 1.22127 0.98302 0.85155 0.97161 1.22401 0.94086 0.97729 1.03490 1.21895 0.98904 0.99141 0.96607 1.21437 0.97886 0.97962 0.97289 1.22541 0.99451 0.96933 0.98870 1.21241 0.96656 0.84377 0.92553 0.93487 1.42549 1.11149 1.10277 1.73532 1.19505 0.90630 0.95221 1.30659 0.91248 1.25480 1.00149 0.97409 1.03709 1.69813 1.28760 1.08725 1.54625 0.85163 0.79773 0.78082 0.77334 1.19256 1.21927 1.22320 1.21996 0.99046 0.84027 0.95742 1.23346 0.97946 1.03499 0.91431 1.23393 0.92630 1.00854 0.99227 1.84792 1.21726 1.21719 1.68020 1.73847 0.89394 1.24301 1.21523 0.89031 0.88606 0.89800 0.81403 0.88328 0.90765 0.88762 0.89507 0.92702 0.91229 0.94404 0.90343 0.94104 0.90339 0.79652 0.94130 0.91727 0.89370 0.87573 0.85446 0.84121 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.47 71.23 0.75 -0.16 16 2 C 0.02 0.43 7.33 43.58 0.32 0.75 16 3 C -0.23 -4.51 9.56 22.40 0.21 -4.30 16 4 C 0.03 0.51 4.62 25.04 0.12 0.62 16 5 C -0.10 -2.08 1.37 -53.68 -0.07 -2.15 16 6 C 0.56 15.86 5.87 87.66 0.51 16.38 16 7 O -0.57 -21.60 15.89 -3.06 -0.05 -21.65 16 8 N -0.58 -15.46 1.72 -818.96 -1.41 -16.86 16 9 C 0.09 1.90 4.89 86.57 0.42 2.32 16 10 C -0.14 -2.44 5.38 30.88 0.17 -2.28 16 11 C -0.13 -3.00 5.40 30.78 0.17 -2.83 16 12 C -0.11 -2.91 5.67 30.46 0.17 -2.74 16 13 C -0.14 -4.49 5.26 30.59 0.16 -4.33 16 14 C 0.16 6.24 2.40 45.37 0.11 6.35 16 15 H 0.05 2.01 5.40 -2.39 -0.01 2.00 16 16 N -0.73 -37.11 4.99 -321.15 -1.60 -38.72 16 17 C -0.23 -12.79 9.94 84.04 0.83 -11.96 16 18 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 20 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 21 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 C 0.12 3.87 5.40 86.47 0.47 4.33 16 26 C -0.12 -2.13 9.75 30.62 0.30 -1.84 16 27 C -0.12 -1.83 6.91 30.62 0.21 -1.62 16 28 O 0.10 1.98 10.97 71.57 0.79 2.77 16 29 N -0.38 -8.04 12.07 -49.56 -0.60 -8.64 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.10 1.95 5.09 -2.39 -0.01 1.94 16 35 H 0.07 1.39 4.73 -2.39 -0.01 1.38 16 36 H 0.09 1.33 7.89 -2.39 -0.02 1.31 16 37 H 0.09 1.31 4.12 -2.38 -0.01 1.30 16 38 H 0.05 1.63 3.69 -2.39 -0.01 1.63 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.71 7.85 -2.39 -0.02 1.69 16 42 H 0.04 1.60 7.88 -2.39 -0.02 1.58 16 43 H 0.08 2.11 4.51 -2.39 -0.01 2.10 16 44 H 0.37 20.10 7.80 -92.71 -0.72 19.37 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.06 2.59 7.10 -2.39 -0.02 2.57 16 47 H 0.09 2.65 7.97 -2.39 -0.02 2.64 16 48 H 0.11 2.15 7.81 -2.39 -0.02 2.13 16 49 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.14 1.39 7.95 -2.39 -0.02 1.37 16 51 H 0.11 1.76 8.00 -2.39 -0.02 1.74 16 Total: -1.00 -71.82 386.13 5.00 -66.82 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.25 Total: 34.07 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.31 Total: -7.35 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -3.32 Total: -123.65 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.74 Total: -18.88 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -71.82 5.00 -66.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088368868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.698 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds