Wall clock time and date at job start Wed Apr 1 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34869 * 119.09860 * 2 1 4 4 C 1.41666 * 119.33903 * 179.97438 * 3 2 1 5 5 O 1.22088 * 121.07229 * 179.97438 * 4 3 2 6 6 C 1.47103 * 117.86292 * 0.02562 * 4 3 2 7 7 C 1.47288 * 120.88480 * 180.02562 * 6 4 3 8 8 O 1.21621 * 119.99421 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00394 * 179.97438 * 7 6 4 10 10 C 1.46490 * 120.00031 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.21531 * 36.93835 * 10 9 7 12 12 C 1.52526 * 110.24984 * 275.00131 * 10 9 7 13 13 C 1.46238 * 114.27923 * 151.62056 * 12 10 9 14 14 N 1.50173 * 107.53050 * 58.40836 * 13 12 10 15 15 C 1.36940 * 120.53717 * 109.56642 * 14 13 12 16 16 H 1.08002 * 120.00220 * 156.67582 * 15 14 13 17 17 C 1.38813 * 120.00099 * 336.68546 * 15 14 13 18 18 N 1.31622 * 119.99940 * 340.41307 * 17 15 14 19 19 Si 1.86793 * 120.00252 * 160.41831 * 17 15 14 20 20 H 1.48497 * 109.47432 * 89.99469 * 19 17 15 21 21 H 1.48499 * 109.47287 * 209.99582 * 19 17 15 22 22 H 1.48500 * 109.47077 * 329.99548 * 19 17 15 23 23 C 1.43427 * 118.92619 * 289.58828 * 14 13 12 24 24 C 1.54907 * 116.08027 * 91.56904 * 23 14 13 25 25 C 1.52999 * 109.35698 * 78.84276 * 24 23 14 26 26 C 1.52995 * 109.36263 * 198.57002 * 24 23 14 27 27 C 1.50127 * 110.25035 * 159.02074 * 10 9 7 28 28 C 1.37988 * 118.23581 * 359.97438 * 6 4 3 29 29 N 1.34349 * 120.37398 * 359.97438 * 28 6 4 30 30 H 0.96997 * 118.80558 * 180.02562 * 29 28 6 31 31 H 1.08998 * 109.47090 * 89.99359 * 1 2 3 32 32 H 1.08997 * 109.47432 * 209.99544 * 1 2 3 33 33 H 1.08997 * 109.47228 * 329.99659 * 1 2 3 34 34 H 1.07992 * 120.33157 * 0.26046 * 3 2 1 35 35 H 0.97001 * 119.99309 * 0.02562 * 9 7 6 36 36 H 1.09002 * 108.52243 * 272.85936 * 12 10 9 37 37 H 1.08994 * 108.52256 * 30.53337 * 12 10 9 38 38 H 1.08996 * 109.84639 * 177.91324 * 13 12 10 39 39 H 1.08996 * 109.84524 * 298.83589 * 13 12 10 40 40 H 0.97004 * 120.00367 * 180.02562 * 18 17 15 41 41 H 1.09005 * 108.16253 * 213.28056 * 23 14 13 42 42 H 1.08993 * 108.16221 * 330.06076 * 23 14 13 43 43 H 1.09001 * 109.47436 * 60.00856 * 25 24 23 44 44 H 1.09006 * 109.46790 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47594 * 299.99965 * 25 24 23 46 46 H 1.08998 * 109.46965 * 59.99665 * 26 24 23 47 47 H 1.08992 * 109.47212 * 179.97438 * 26 24 23 48 48 H 1.09006 * 109.47038 * 300.00004 * 26 24 23 49 49 H 1.09003 * 109.21036 * 337.00050 * 27 10 9 50 50 H 1.09004 * 109.20817 * 96.30699 * 27 10 9 51 51 H 1.08001 * 119.81543 * 179.97438 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5795 1.1844 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1132 0.0005 7 6 5.7436 -0.1847 0.0016 8 8 6.4020 0.8379 0.0031 9 7 6.3602 -1.3832 0.0021 10 6 7.8233 -1.4541 0.0038 11 1 8.2384 -0.6560 0.6191 12 6 8.3583 -1.3548 -1.4211 13 6 9.6966 -0.7740 -1.5218 14 7 10.6221 -1.6252 -0.7008 15 6 11.5607 -2.4169 -1.3069 16 1 12.4419 -2.7231 -0.7627 17 6 11.3797 -2.8259 -2.6210 18 7 10.1791 -2.7974 -3.1597 19 14 12.8398 -3.4170 -3.6249 20 1 12.9986 -4.8833 -3.4518 21 1 12.6111 -3.1099 -5.0596 22 1 14.0708 -2.7277 -3.1613 23 6 10.5068 -1.5959 0.7286 24 6 9.5651 -2.6529 1.3576 25 6 10.2840 -4.0022 1.4153 26 6 9.1891 -2.2176 2.7753 27 6 8.2780 -2.7930 0.5083 28 6 3.5076 -1.2617 0.0005 29 7 2.1664 -1.1847 0.0010 30 1 1.6510 -2.0064 0.0014 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.6137 2.1083 0.0042 35 1 5.8349 -2.1987 0.0014 36 1 8.3818 -2.3555 -1.8527 37 1 7.6726 -0.7425 -2.0065 38 1 10.0216 -0.7714 -2.5622 39 1 9.6880 0.2448 -1.1344 40 1 10.0524 -3.0835 -4.0779 41 1 11.5017 -1.7321 1.1526 42 1 10.1478 -0.6090 1.0203 43 1 11.1842 -3.9087 2.0229 44 1 9.6228 -4.7476 1.8573 45 1 10.5571 -4.3119 0.4065 46 1 8.6811 -1.2540 2.7368 47 1 8.5261 -2.9599 3.2195 48 1 10.0920 -2.1284 3.3795 49 1 7.4903 -3.2319 1.1208 50 1 8.4778 -3.4471 -0.3404 51 1 3.9899 -2.2280 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089533387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:52 Heat of formation + Delta-G solvation = -14.105519 kcal Electronic energy + Delta-G solvation = -32076.052537 eV Core-core repulsion = 27976.594096 eV Total energy + Delta-G solvation = -4099.458441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.14447 -39.46685 -38.10152 -37.42439 -34.44288 -34.29838 -33.64377 -31.85900 -31.10149 -30.33230 -28.39086 -27.27411 -26.63010 -25.44644 -24.33408 -23.37012 -22.45694 -21.75957 -20.64456 -19.79759 -19.00541 -17.79056 -17.58838 -16.57578 -16.34299 -16.10673 -15.58540 -15.35431 -14.96947 -14.68127 -14.28397 -14.08713 -13.74389 -13.58497 -13.50164 -13.32049 -13.26961 -13.19318 -12.96648 -12.91641 -12.52333 -12.40782 -12.25807 -11.79475 -11.60806 -11.36664 -11.16330 -10.83051 -10.77199 -10.65388 -10.52766 -10.14267 -9.95239 -9.87350 -9.71688 -9.66676 -9.61525 -9.41041 -9.16700 -9.01484 -8.54651 -8.28304 -8.10583 -6.62174 -5.72263 -3.09996 0.71953 1.12634 2.39996 3.19156 3.40753 3.49103 3.52333 3.52588 3.90415 3.95864 4.23280 4.47791 4.56514 4.72311 4.84495 4.84802 5.20651 5.25347 5.30096 5.45398 5.47608 5.55375 5.58379 5.63681 5.72399 5.94382 6.07514 6.15768 6.17013 6.20906 6.35193 6.38458 6.44580 6.45610 6.55227 6.58447 6.64354 6.75332 6.82503 6.87553 6.97896 7.06891 7.12579 7.21078 7.30302 7.42547 7.70003 7.81353 7.98547 8.06448 8.14041 8.50088 8.77423 9.26266 9.94689 10.48849 11.34589 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002843 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.504056 B = 9848.095633 C =10412.972339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 C -0.269 4.269 4 C 0.405 3.595 5 O -0.475 6.475 6 C -0.288 4.288 7 C 0.566 3.434 8 O -0.508 6.508 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.084 0.916 12 C -0.132 4.132 13 C 0.168 3.832 14 N -0.585 5.585 15 C -0.239 4.239 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.900 5.900 19 Si 0.896 3.104 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.166 3.834 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.099 4.099 28 C 0.165 3.835 29 N -0.580 5.580 30 H 0.419 0.581 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.384 0.616 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.010 0.990 40 H 0.250 0.750 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.048 0.952 49 H 0.038 0.962 50 H 0.081 0.919 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 -3.350 8.230 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 C -0.294 4.294 4 C 0.290 3.710 5 O -0.355 6.355 6 C -0.299 4.299 7 C 0.351 3.649 8 O -0.383 6.383 9 N -0.376 5.376 10 C 0.046 3.954 11 H 0.102 0.898 12 C -0.171 4.171 13 C 0.044 3.956 14 N -0.305 5.305 15 C -0.369 4.369 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.726 3.274 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.036 3.964 24 C -0.093 4.093 25 C -0.185 4.185 26 C -0.193 4.193 27 C -0.137 4.137 28 C 0.035 3.965 29 N -0.187 5.187 30 H 0.255 0.745 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.217 0.783 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.099 0.901 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.262 -1.991 8.032 22.816 hybrid contribution 0.016 -1.506 -0.633 1.633 sum -21.246 -3.497 7.399 22.768 Atomic orbital electron populations 1.21084 0.88010 1.04776 1.04308 1.20250 0.94692 0.85576 0.94962 1.22275 0.96368 0.97276 1.13443 1.18193 0.88220 0.88045 0.76496 1.90838 1.69930 1.33224 1.41541 1.22716 0.95005 0.95007 1.17208 1.17452 0.85804 0.84059 0.77549 1.90861 1.65721 1.33898 1.47791 1.46198 1.08348 1.06886 1.76177 1.20456 0.76903 0.98646 0.99381 0.89820 1.21313 0.97680 1.04819 0.93304 1.20105 0.88174 0.89451 0.97848 1.44264 1.39066 1.47651 0.99541 1.19155 0.97697 1.24315 0.95745 0.91657 1.24854 0.95920 0.99856 0.99047 1.69968 1.19121 1.51373 1.14062 0.86401 0.82995 0.78220 0.79763 1.21783 1.21795 1.20742 1.20512 0.95723 0.94310 0.85856 1.21934 0.95962 0.98051 0.93362 1.21741 0.98480 0.95682 1.02624 1.21849 1.00301 1.00422 0.96765 1.21770 0.95864 0.96179 0.99890 1.22214 0.82525 1.00055 0.91747 1.40666 1.05914 1.08850 1.63274 0.74457 0.89280 0.90551 0.88820 0.83184 0.78288 0.88132 0.95233 0.89182 0.97187 0.93942 0.94886 0.95221 0.93944 0.94930 0.90923 0.93271 0.93859 0.93321 0.94301 0.90076 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.25 10.03 36.01 0.36 0.11 16 2 C 0.15 0.93 6.79 -82.13 -0.56 0.37 16 3 C -0.27 -2.83 9.57 -39.47 -0.38 -3.21 16 4 C 0.41 6.55 6.96 -34.68 -0.24 6.31 16 5 O -0.48 -10.25 16.41 -15.18 -0.25 -10.50 16 6 C -0.29 -4.10 6.05 -102.72 -0.62 -4.72 16 7 C 0.57 10.36 7.63 -12.58 -0.10 10.26 16 8 O -0.51 -12.15 15.29 -14.76 -0.23 -12.38 16 9 N -0.72 -11.45 4.96 -56.57 -0.28 -11.73 16 10 C 0.15 2.85 2.10 -69.61 -0.15 2.70 16 11 H 0.08 1.81 5.27 -51.93 -0.27 1.54 16 12 C -0.13 -2.94 4.73 -30.19 -0.14 -3.09 16 13 C 0.17 4.15 5.24 -5.20 -0.03 4.12 16 14 N -0.59 -14.26 2.60 -175.08 -0.46 -14.72 16 15 C -0.24 -6.29 8.94 -15.06 -0.13 -6.43 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -24.43 9.43 55.49 0.52 -23.90 16 19 Si 0.90 21.42 29.60 -169.99 -5.03 16.39 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.17 3.51 4.01 -4.66 -0.02 3.49 16 24 C -0.09 -1.60 0.77 -152.54 -0.12 -1.72 16 25 C -0.13 -2.27 8.29 37.16 0.31 -1.96 16 26 C -0.14 -2.10 8.20 37.15 0.30 -1.79 16 27 C -0.10 -1.76 4.14 -27.19 -0.11 -1.87 16 28 C 0.17 1.29 10.74 -16.54 -0.18 1.11 16 29 N -0.58 -2.71 5.16 -9.00 -0.05 -2.76 16 30 H 0.42 0.18 8.70 -40.82 -0.35 -0.18 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 32 H 0.08 0.01 8.12 -51.93 -0.42 -0.42 16 33 H 0.09 0.17 8.05 -51.93 -0.42 -0.25 16 34 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.38 4.46 6.52 -40.82 -0.27 4.19 16 36 H 0.10 2.45 5.29 -51.93 -0.27 2.17 16 37 H 0.03 0.68 7.90 -51.93 -0.41 0.27 16 38 H 0.09 2.46 6.05 -51.93 -0.31 2.14 16 39 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 40 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 41 H 0.03 0.70 7.84 -51.93 -0.41 0.30 16 42 H 0.03 0.63 6.66 -51.93 -0.35 0.29 16 43 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.51 7.45 -51.93 -0.39 1.13 16 46 H 0.05 0.79 7.55 -51.93 -0.39 0.40 16 47 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.04 0.58 7.63 -51.93 -0.40 0.19 16 50 H 0.08 1.68 6.66 -51.93 -0.35 1.33 16 51 H 0.17 0.74 6.42 -52.49 -0.34 0.40 16 LS Contribution 393.03 15.07 5.92 5.92 Total: -1.00 -37.61 393.03 -9.58 -47.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.85 Total: 2.88 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.88 Total: 3.62 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.26 Total: -53.11 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.47 Total: -22.88 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.61 -9.58 -47.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089533387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.078 kcal (2) G-P(sol) polarization free energy of solvation -37.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds