Wall clock time and date at job start Wed Apr 1 2020 04:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34869 * 119.09860 * 2 1 4 4 C 1.41666 * 119.33903 * 179.97438 * 3 2 1 5 5 O 1.22088 * 121.07229 * 179.97438 * 4 3 2 6 6 C 1.47103 * 117.86292 * 0.02562 * 4 3 2 7 7 C 1.47288 * 120.88480 * 180.02562 * 6 4 3 8 8 O 1.21621 * 119.99421 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00394 * 179.97438 * 7 6 4 10 10 C 1.46490 * 120.00031 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.21531 * 36.93835 * 10 9 7 12 12 C 1.52526 * 110.24984 * 275.00131 * 10 9 7 13 13 C 1.46238 * 114.27923 * 151.62056 * 12 10 9 14 14 N 1.50173 * 107.53050 * 58.40836 * 13 12 10 15 15 C 1.36940 * 120.53717 * 109.56642 * 14 13 12 16 16 H 1.08002 * 120.00220 * 156.67582 * 15 14 13 17 17 C 1.38813 * 120.00099 * 336.68546 * 15 14 13 18 18 N 1.31622 * 119.99940 * 340.41307 * 17 15 14 19 19 Si 1.86793 * 120.00252 * 160.41831 * 17 15 14 20 20 H 1.48497 * 109.47432 * 89.99469 * 19 17 15 21 21 H 1.48499 * 109.47287 * 209.99582 * 19 17 15 22 22 H 1.48500 * 109.47077 * 329.99548 * 19 17 15 23 23 C 1.43427 * 118.92619 * 289.58828 * 14 13 12 24 24 C 1.54907 * 116.08027 * 91.56904 * 23 14 13 25 25 C 1.52999 * 109.35698 * 78.84276 * 24 23 14 26 26 C 1.52995 * 109.36263 * 198.57002 * 24 23 14 27 27 C 1.50127 * 110.25035 * 159.02074 * 10 9 7 28 28 C 1.37988 * 118.23581 * 359.97438 * 6 4 3 29 29 N 1.34349 * 120.37398 * 359.97438 * 28 6 4 30 30 H 0.96997 * 118.80558 * 180.02562 * 29 28 6 31 31 H 1.08998 * 109.47090 * 89.99359 * 1 2 3 32 32 H 1.08997 * 109.47432 * 209.99544 * 1 2 3 33 33 H 1.08997 * 109.47228 * 329.99659 * 1 2 3 34 34 H 1.07992 * 120.33157 * 0.26046 * 3 2 1 35 35 H 0.97001 * 119.99309 * 0.02562 * 9 7 6 36 36 H 1.09002 * 108.52243 * 272.85936 * 12 10 9 37 37 H 1.08994 * 108.52256 * 30.53337 * 12 10 9 38 38 H 1.08996 * 109.84639 * 177.91324 * 13 12 10 39 39 H 1.08996 * 109.84524 * 298.83589 * 13 12 10 40 40 H 0.97004 * 120.00367 * 180.02562 * 18 17 15 41 41 H 1.09005 * 108.16253 * 213.28056 * 23 14 13 42 42 H 1.08993 * 108.16221 * 330.06076 * 23 14 13 43 43 H 1.09001 * 109.47436 * 60.00856 * 25 24 23 44 44 H 1.09006 * 109.46790 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47594 * 299.99965 * 25 24 23 46 46 H 1.08998 * 109.46965 * 59.99665 * 26 24 23 47 47 H 1.08992 * 109.47212 * 179.97438 * 26 24 23 48 48 H 1.09006 * 109.47038 * 300.00004 * 26 24 23 49 49 H 1.09003 * 109.21036 * 337.00050 * 27 10 9 50 50 H 1.09004 * 109.20817 * 96.30699 * 27 10 9 51 51 H 1.08001 * 119.81543 * 179.97438 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5795 1.1844 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1132 0.0005 7 6 5.7436 -0.1847 0.0016 8 8 6.4020 0.8379 0.0031 9 7 6.3602 -1.3832 0.0021 10 6 7.8233 -1.4541 0.0038 11 1 8.2384 -0.6560 0.6191 12 6 8.3583 -1.3548 -1.4211 13 6 9.6966 -0.7740 -1.5218 14 7 10.6221 -1.6252 -0.7008 15 6 11.5607 -2.4169 -1.3069 16 1 12.4419 -2.7231 -0.7627 17 6 11.3797 -2.8259 -2.6210 18 7 10.1791 -2.7974 -3.1597 19 14 12.8398 -3.4170 -3.6249 20 1 12.9986 -4.8833 -3.4518 21 1 12.6111 -3.1099 -5.0596 22 1 14.0708 -2.7277 -3.1613 23 6 10.5068 -1.5959 0.7286 24 6 9.5651 -2.6529 1.3576 25 6 10.2840 -4.0022 1.4153 26 6 9.1891 -2.2176 2.7753 27 6 8.2780 -2.7930 0.5083 28 6 3.5076 -1.2617 0.0005 29 7 2.1664 -1.1847 0.0010 30 1 1.6510 -2.0064 0.0014 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.6137 2.1083 0.0042 35 1 5.8349 -2.1987 0.0014 36 1 8.3818 -2.3555 -1.8527 37 1 7.6726 -0.7425 -2.0065 38 1 10.0216 -0.7714 -2.5622 39 1 9.6880 0.2448 -1.1344 40 1 10.0524 -3.0835 -4.0779 41 1 11.5017 -1.7321 1.1526 42 1 10.1478 -0.6090 1.0203 43 1 11.1842 -3.9087 2.0229 44 1 9.6228 -4.7476 1.8573 45 1 10.5571 -4.3119 0.4065 46 1 8.6811 -1.2540 2.7368 47 1 8.5261 -2.9599 3.2195 48 1 10.0920 -2.1284 3.3795 49 1 7.4903 -3.2319 1.1208 50 1 8.4778 -3.4471 -0.3404 51 1 3.9899 -2.2280 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089533387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:51 Heat of formation + Delta-G solvation = -40.967658 kcal Electronic energy + Delta-G solvation = -32077.217367 eV Core-core repulsion = 27976.594096 eV Total energy + Delta-G solvation = -4100.623271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02768 -40.92644 -39.50934 -38.66051 -36.21160 -35.87342 -34.42842 -33.27190 -32.69404 -31.81727 -29.38146 -28.51026 -28.01778 -27.29960 -25.30194 -24.99491 -23.66480 -22.97378 -22.12530 -21.48983 -20.13058 -19.14695 -18.66142 -18.43252 -17.30057 -17.17642 -16.98116 -16.70886 -16.43320 -15.87986 -15.73884 -15.57896 -15.23230 -15.20219 -14.95827 -14.45926 -14.39967 -14.12815 -13.92783 -13.83127 -13.69468 -13.48726 -13.39343 -13.24227 -13.04354 -13.01249 -12.86575 -12.63568 -12.49504 -12.36526 -12.23725 -11.91649 -11.66193 -11.50795 -11.39676 -11.12160 -11.03743 -10.94578 -10.48168 -10.44407 -10.27450 -9.87551 -9.16878 -8.61610 -7.77484 -5.17053 -0.15736 0.36143 1.47629 1.52017 1.59388 1.79055 1.96862 2.24062 2.57090 2.83868 3.35430 3.35897 3.57483 3.65894 3.75567 3.97621 4.02947 4.06846 4.11405 4.26846 4.40094 4.49903 4.51153 4.57251 4.75673 4.76480 4.80837 4.81879 4.84673 4.90199 4.96634 5.00278 5.09149 5.14567 5.21194 5.22705 5.29209 5.31261 5.38053 5.40285 5.49001 5.56176 5.65037 5.69598 5.71091 5.78383 5.83960 6.07234 6.13310 6.45708 6.75123 7.12760 7.19937 7.47221 7.93043 8.47570 9.27528 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002843 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.504056 B = 9848.095633 C =10412.972339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.194 3.806 3 C -0.305 4.305 4 C 0.380 3.620 5 O -0.569 6.569 6 C -0.353 4.353 7 C 0.563 3.437 8 O -0.582 6.582 9 N -0.706 5.706 10 C 0.164 3.836 11 H 0.056 0.944 12 C -0.114 4.114 13 C 0.173 3.827 14 N -0.594 5.594 15 C -0.246 4.246 16 H 0.063 0.937 17 C -0.041 4.041 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.282 1.282 23 C 0.161 3.839 24 C -0.085 4.085 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.088 4.088 28 C 0.229 3.771 29 N -0.547 5.547 30 H 0.451 0.549 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.409 0.591 36 H 0.086 0.914 37 H 0.008 0.992 38 H 0.060 0.940 39 H -0.005 1.005 40 H 0.246 0.754 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.055 0.945 51 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.010 -7.788 9.950 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 C -0.328 4.328 4 C 0.273 3.727 5 O -0.457 6.457 6 C -0.363 4.363 7 C 0.352 3.648 8 O -0.462 6.462 9 N -0.359 5.359 10 C 0.060 3.940 11 H 0.074 0.926 12 C -0.153 4.153 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.376 4.376 16 H 0.081 0.919 17 C -0.237 4.237 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.208 1.208 23 C 0.033 3.967 24 C -0.089 4.089 25 C -0.177 4.177 26 C -0.185 4.185 27 C -0.126 4.126 28 C 0.094 3.906 29 N -0.154 5.154 30 H 0.294 0.706 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.078 0.922 39 H 0.013 0.987 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -25.272 -6.548 9.784 27.880 hybrid contribution 1.054 -0.236 -1.162 1.586 sum -24.218 -6.784 8.622 26.587 Atomic orbital electron populations 1.21298 0.83742 1.06900 1.06038 1.20775 0.96865 0.84285 0.89591 1.22103 0.93742 0.99759 1.17228 1.19061 0.90558 0.87886 0.75223 1.90781 1.71869 1.35788 1.47307 1.22186 0.93021 0.96656 1.24460 1.18110 0.87597 0.83337 0.75768 1.90819 1.67652 1.36409 1.51297 1.45848 1.06980 1.07552 1.75542 1.20027 0.78873 0.98775 0.96359 0.92560 1.21092 0.95922 1.02836 0.95484 1.19885 0.89878 0.89163 0.96161 1.44234 1.39097 1.47472 1.00717 1.19280 0.98021 1.24043 0.96218 0.91935 1.25442 0.97834 1.00615 0.99820 1.70099 1.20263 1.52101 1.13743 0.85503 0.80437 0.77879 0.77900 1.21124 1.22485 1.20754 1.20637 0.96598 0.95300 0.84185 1.21820 0.95161 0.97061 0.94812 1.21632 0.99414 0.95802 1.00817 1.21763 1.01304 1.00640 0.94787 1.21606 0.96993 0.94473 0.99490 1.22625 0.83287 0.99536 0.85168 1.40960 1.05197 1.10175 1.59041 0.70557 0.87386 0.86928 0.88292 0.82910 0.75331 0.89540 0.97349 0.92207 0.98733 0.94491 0.95193 0.96230 0.93230 0.91899 0.94494 0.94339 0.90877 0.92383 0.90029 0.92659 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.25 10.03 71.24 0.71 0.96 16 2 C 0.19 1.52 6.79 41.21 0.28 1.80 16 3 C -0.31 -6.31 9.57 22.34 0.21 -6.10 16 4 C 0.38 13.19 6.96 25.44 0.18 13.37 16 5 O -0.57 -27.79 16.41 13.54 0.22 -27.57 16 6 C -0.35 -10.03 6.05 -18.63 -0.11 -10.14 16 7 C 0.56 21.58 7.63 86.62 0.66 22.24 16 8 O -0.58 -30.64 15.29 15.04 0.23 -30.41 16 9 N -0.71 -21.96 4.96 -451.15 -2.24 -24.20 16 10 C 0.16 6.41 2.10 43.91 0.09 6.50 16 11 H 0.06 2.57 5.27 -2.39 -0.01 2.55 16 12 C -0.11 -5.38 4.73 28.36 0.13 -5.25 16 13 C 0.17 9.20 5.24 83.58 0.44 9.64 16 14 N -0.59 -30.28 2.60 -707.83 -1.84 -32.12 16 15 C -0.25 -13.30 8.94 84.03 0.75 -12.55 16 16 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 17 C -0.04 -2.26 4.91 84.86 0.42 -1.84 16 18 N -0.92 -51.41 9.43 21.65 0.20 -51.21 16 19 Si 0.95 44.98 29.60 68.60 2.03 47.01 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 C 0.16 7.01 4.01 87.60 0.35 7.36 16 24 C -0.08 -2.95 0.77 -50.90 -0.04 -2.99 16 25 C -0.12 -3.98 8.29 71.98 0.60 -3.38 16 26 C -0.13 -3.60 8.20 71.98 0.59 -3.01 16 27 C -0.09 -2.98 4.14 30.30 0.13 -2.86 16 28 C 0.23 2.52 10.74 84.25 0.90 3.43 16 29 N -0.55 -1.74 5.16 -182.38 -0.94 -2.68 16 30 H 0.45 -3.46 8.70 -92.71 -0.81 -4.27 16 31 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.11 -0.89 8.12 -2.39 -0.02 -0.91 16 33 H 0.10 -0.13 8.05 -2.39 -0.02 -0.15 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.41 8.09 6.52 -92.71 -0.60 7.48 16 36 H 0.09 4.37 5.29 -2.39 -0.01 4.36 16 37 H 0.01 0.40 7.90 -2.39 -0.02 0.38 16 38 H 0.06 3.51 6.05 -2.39 -0.01 3.49 16 39 H -0.01 -0.30 8.13 -2.39 -0.02 -0.32 16 40 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 41 H 0.03 1.30 7.84 -2.38 -0.02 1.28 16 42 H 0.02 0.88 6.66 -2.39 -0.02 0.86 16 43 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 44 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.04 1.50 7.45 -2.39 -0.02 1.48 16 46 H 0.04 1.18 7.55 -2.39 -0.02 1.16 16 47 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 48 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.08 2.09 7.63 -2.39 -0.02 2.08 16 50 H 0.05 2.23 6.66 -2.39 -0.02 2.21 16 51 H 0.22 0.34 6.42 -2.91 -0.02 0.32 16 Total: -1.00 -98.92 393.03 3.52 -95.41 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -0.44 Total: 8.59 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.30 Total: 17.17 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -4.82 Total: -110.20 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: 0.45 Total: -57.98 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -98.92 3.52 -95.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089533387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.441 kcal (2) G-P(sol) polarization free energy of solvation -98.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds