Wall clock time and date at job start Wed Apr 1 2020 04:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34867 * 119.10040 * 2 1 4 4 C 1.41667 * 119.34068 * 179.97438 * 3 2 1 5 5 O 1.22081 * 121.06739 * 180.02562 * 4 3 2 6 6 C 1.47102 * 117.86044 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88119 * 179.97438 * 6 4 3 8 8 O 1.21627 * 120.00014 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00290 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00137 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.48724 * 325.04419 * 10 9 7 12 12 C 1.50756 * 109.55553 * 85.17487 * 10 9 7 13 13 C 1.53948 * 110.13049 * 211.96042 * 12 10 9 14 14 N 1.47604 * 112.07446 * 319.28240 * 13 12 10 15 15 C 1.36940 * 118.64417 * 137.91715 * 14 13 12 16 16 H 1.08002 * 119.99858 * 319.00494 * 15 14 13 17 17 C 1.38809 * 120.00224 * 139.01044 * 15 14 13 18 18 N 1.31624 * 119.99970 * 156.61241 * 17 15 14 19 19 Si 1.86798 * 119.99952 * 336.60970 * 17 15 14 20 20 H 1.48503 * 109.47131 * 95.53344 * 19 17 15 21 21 H 1.48498 * 109.47331 * 215.53068 * 19 17 15 22 22 H 1.48500 * 109.47158 * 335.53591 * 19 17 15 23 23 C 1.44577 * 122.71614 * 317.93563 * 14 13 12 24 24 C 1.54861 * 109.59779 * 90.70256 * 23 14 13 25 25 C 1.52999 * 109.32640 * 48.99405 * 24 23 14 26 26 C 1.53002 * 109.32924 * 168.47095 * 24 23 14 27 27 C 1.47098 * 110.32594 * 288.73688 * 24 23 14 28 28 C 1.37987 * 118.23894 * 0.25241 * 6 4 3 29 29 N 1.34345 * 120.36968 * 359.46582 * 28 6 4 30 30 H 0.96996 * 118.80779 * 180.29336 * 29 28 6 31 31 H 1.09005 * 109.46761 * 90.00133 * 1 2 3 32 32 H 1.09001 * 109.46897 * 209.99468 * 1 2 3 33 33 H 1.08999 * 109.47393 * 330.00162 * 1 2 3 34 34 H 1.07994 * 120.32988 * 359.97438 * 3 2 1 35 35 H 0.97002 * 119.99702 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.43516 * 91.70517 * 12 10 9 37 37 H 1.08994 * 109.26192 * 332.10543 * 12 10 9 38 38 H 1.09004 * 108.94730 * 198.64311 * 13 12 10 39 39 H 1.09001 * 108.95003 * 79.92390 * 13 12 10 40 40 H 0.97000 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.45570 * 210.74524 * 23 14 13 42 42 H 1.09002 * 109.44765 * 330.66932 * 23 14 13 43 43 H 1.08999 * 109.46941 * 59.99923 * 25 24 23 44 44 H 1.09000 * 109.47401 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47476 * 299.99742 * 25 24 23 46 46 H 1.08999 * 109.47230 * 60.00344 * 26 24 23 47 47 H 1.09001 * 109.47062 * 180.02562 * 26 24 23 48 48 H 1.08995 * 109.46889 * 300.00155 * 26 24 23 49 49 H 1.09004 * 108.51204 * 184.05465 * 27 24 23 50 50 H 1.08996 * 108.50809 * 301.70064 * 27 24 23 51 51 H 1.08003 * 119.81497 * 179.72775 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2724 -0.1132 0.0005 7 6 5.7436 -0.1847 0.0005 8 8 6.4021 0.8379 0.0010 9 7 6.3601 -1.3832 0.0010 10 6 7.8234 -1.4542 0.0016 11 1 8.2276 -0.6308 -0.5872 12 6 8.3327 -1.3590 1.4173 13 6 9.7014 -0.6546 1.4418 14 7 10.5667 -1.0850 0.3262 15 6 11.2987 -0.1385 -0.3398 16 1 10.8575 0.8190 -0.5742 17 6 12.6077 -0.4096 -0.7136 18 7 13.1576 0.2506 -1.7108 19 14 13.5890 -1.7113 0.1986 20 1 13.4997 -3.0010 -0.5320 21 1 15.0101 -1.2893 0.2858 22 1 13.0374 -1.8784 1.5672 23 6 10.6732 -2.4647 -0.0928 24 6 9.6191 -2.7575 -1.1889 25 6 9.6885 -1.6690 -2.2619 26 6 9.9179 -4.1145 -1.8292 27 6 8.2688 -2.7809 -0.6059 28 6 3.5076 -1.2618 -0.0054 29 7 2.1664 -1.1847 -0.0001 30 1 1.6510 -2.0064 -0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6137 2.1083 -0.0004 35 1 5.8349 -2.1987 0.0010 36 1 8.4343 -2.3609 1.8343 37 1 7.6226 -0.7900 2.0173 38 1 10.1996 -0.8820 2.3842 39 1 9.5465 0.4222 1.3744 40 1 14.0724 0.0613 -1.9717 41 1 11.6713 -2.6471 -0.4911 42 1 10.4990 -3.1181 0.7621 43 1 10.6838 -1.6599 -2.7062 44 1 8.9477 -1.8731 -3.0349 45 1 9.4838 -0.6988 -1.8091 46 1 9.8773 -4.8928 -1.0672 47 1 9.1775 -4.3228 -2.6015 48 1 10.9121 -4.0946 -2.2755 49 1 7.5600 -3.0599 -1.3856 50 1 8.2416 -3.5424 0.1735 51 1 3.9900 -2.2281 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089533388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:56 Heat of formation + Delta-G solvation = -11.617895 kcal Electronic energy + Delta-G solvation = -32139.603300 eV Core-core repulsion = 28040.252730 eV Total energy + Delta-G solvation = -4099.350570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.22851 -39.75627 -38.37619 -37.57543 -34.72049 -34.20326 -33.76014 -32.15776 -31.47736 -30.34739 -28.43273 -27.36807 -26.46416 -25.55699 -24.49722 -23.98456 -22.61781 -21.99108 -20.79817 -19.63663 -19.03443 -18.24563 -17.68786 -16.54711 -16.39133 -16.27018 -15.72154 -15.64551 -15.12376 -14.76167 -14.64232 -14.27667 -13.90150 -13.71022 -13.60515 -13.41053 -13.31271 -13.25166 -13.11922 -13.02428 -12.77235 -12.53977 -12.32161 -12.05999 -11.85794 -11.53179 -11.22861 -11.17220 -11.05268 -10.62330 -10.44011 -10.26476 -9.99034 -9.82230 -9.79686 -9.76602 -9.68424 -9.55988 -9.44146 -9.12223 -8.70021 -8.34260 -8.25855 -6.60084 -5.87733 -3.28594 0.63640 1.05692 2.32026 3.10642 3.35006 3.38475 3.54236 3.60872 3.82957 3.86555 4.13926 4.41152 4.63259 4.63814 4.76157 4.79243 5.04653 5.08932 5.17654 5.20448 5.35028 5.39537 5.41296 5.56794 5.62503 5.71486 5.86884 5.96931 6.07472 6.12067 6.14088 6.17686 6.25262 6.34697 6.37078 6.41782 6.47691 6.50884 6.59704 6.67264 6.75859 6.85507 6.95631 6.96822 6.97305 7.03439 7.26431 7.66672 7.82889 8.08225 8.23231 8.56155 8.64899 9.18938 9.85678 10.23572 11.27747 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.002807 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.555493 B = 9974.171255 C =10564.837696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.151 3.849 3 C -0.267 4.267 4 C 0.404 3.596 5 O -0.471 6.471 6 C -0.288 4.288 7 C 0.564 3.436 8 O -0.498 6.498 9 N -0.732 5.732 10 C 0.150 3.850 11 H 0.112 0.888 12 C -0.139 4.139 13 C 0.150 3.850 14 N -0.601 5.601 15 C -0.262 4.262 16 H 0.078 0.922 17 C 0.041 3.959 18 N -0.897 5.897 19 Si 0.869 3.131 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.158 3.842 24 C -0.087 4.087 25 C -0.121 4.121 26 C -0.136 4.136 27 C -0.096 4.096 28 C 0.165 3.835 29 N -0.581 5.581 30 H 0.419 0.581 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.383 0.617 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.343 -12.170 3.326 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.044 3.956 3 C -0.291 4.291 4 C 0.289 3.711 5 O -0.351 6.351 6 C -0.300 4.300 7 C 0.350 3.650 8 O -0.371 6.371 9 N -0.385 5.385 10 C 0.047 3.953 11 H 0.130 0.870 12 C -0.179 4.179 13 C 0.025 3.975 14 N -0.323 5.323 15 C -0.391 4.391 16 H 0.095 0.905 17 C -0.160 4.160 18 N -0.538 5.538 19 Si 0.699 3.301 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.196 1.196 23 C 0.031 3.969 24 C -0.091 4.091 25 C -0.178 4.178 26 C -0.194 4.194 27 C -0.134 4.134 28 C 0.034 3.966 29 N -0.187 5.187 30 H 0.255 0.745 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.216 0.784 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -27.351 -10.714 3.264 29.556 hybrid contribution 0.141 -1.869 0.451 1.928 sum -27.210 -12.584 3.715 30.209 Atomic orbital electron populations 1.21087 0.87979 1.04815 1.04305 1.20247 0.94707 0.85539 0.95086 1.22298 0.96373 0.97327 1.13132 1.18197 0.88237 0.88052 0.76626 1.90860 1.69881 1.33183 1.41183 1.22693 0.94854 0.95082 1.17341 1.17480 0.85894 0.84001 0.77651 1.90923 1.65572 1.33725 1.46847 1.46210 1.08220 1.07029 1.76996 1.20553 0.76953 1.00422 0.97396 0.86978 1.22197 0.98877 1.00479 0.96302 1.21209 0.88166 0.98147 0.89983 1.43887 1.50183 1.03404 1.34861 1.18770 0.92462 0.97772 1.30114 0.90497 1.25478 0.96558 0.96986 0.96964 1.69903 1.14628 1.43614 1.25613 0.87038 0.79307 0.81599 0.82107 1.21519 1.23137 1.19559 1.21140 0.96445 0.85981 0.93325 1.20323 0.95507 0.95117 0.98126 1.21750 1.00562 0.99584 0.95874 1.21832 1.01387 0.96530 0.99607 1.20624 0.97659 0.95761 0.99329 1.22177 0.82580 0.99920 0.91891 1.40655 1.05878 1.08861 1.63354 0.74483 0.89283 0.90558 0.88780 0.83115 0.78433 0.93001 0.92061 0.96409 0.91964 0.92932 0.92782 0.94995 0.92449 0.96079 0.90130 0.93664 0.93552 0.92670 0.93049 0.93058 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.17 10.03 36.01 0.36 0.19 16 2 C 0.15 0.79 6.79 -82.13 -0.56 0.24 16 3 C -0.27 -2.62 9.57 -39.47 -0.38 -3.00 16 4 C 0.40 6.23 6.96 -34.68 -0.24 5.98 16 5 O -0.47 -9.97 16.41 -15.17 -0.25 -10.22 16 6 C -0.29 -3.75 6.05 -102.72 -0.62 -4.38 16 7 C 0.56 9.56 7.59 -12.58 -0.10 9.46 16 8 O -0.50 -11.55 15.24 -14.76 -0.22 -11.77 16 9 N -0.73 -9.99 4.88 -56.25 -0.27 -10.27 16 10 C 0.15 2.54 1.98 -69.28 -0.14 2.40 16 11 H 0.11 2.45 4.75 -51.93 -0.25 2.20 16 12 C -0.14 -2.41 5.38 -27.36 -0.15 -2.55 16 13 C 0.15 3.20 6.25 -2.94 -0.02 3.18 16 14 N -0.60 -14.23 1.37 -172.09 -0.24 -14.46 16 15 C -0.26 -7.32 7.29 -15.06 -0.11 -7.43 16 16 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.04 1.17 5.22 -17.43 -0.09 1.08 16 18 N -0.90 -27.49 13.97 55.49 0.78 -26.71 16 19 Si 0.87 22.46 25.27 -169.99 -4.30 18.16 16 20 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 21 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 22 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.16 3.39 3.55 -4.09 -0.01 3.37 16 24 C -0.09 -1.59 0.72 -156.36 -0.11 -1.70 16 25 C -0.12 -2.54 7.03 37.16 0.26 -2.28 16 26 C -0.14 -2.12 8.37 37.16 0.31 -1.81 16 27 C -0.10 -1.45 3.40 -29.79 -0.10 -1.56 16 28 C 0.17 1.05 10.74 -16.54 -0.18 0.87 16 29 N -0.58 -2.06 5.16 -9.00 -0.05 -2.11 16 30 H 0.42 -0.31 8.70 -40.82 -0.35 -0.66 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 -0.05 8.12 -51.93 -0.42 -0.47 16 33 H 0.09 0.12 8.05 -51.93 -0.42 -0.30 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.38 3.42 6.68 -40.82 -0.27 3.15 16 36 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 37 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.44 7.89 -51.93 -0.41 1.03 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.05 1.29 3.57 -51.93 -0.19 1.11 16 42 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 1.94 4.46 -51.93 -0.23 1.71 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 50 H 0.05 0.70 7.34 -51.93 -0.38 0.31 16 51 H 0.17 0.42 6.42 -52.48 -0.34 0.08 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -40.73 388.75 -8.41 -49.13 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.84 Total: 0.32 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.87 Total: 2.08 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.22 Total: -53.56 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.47 Total: -21.99 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.30 Total: 18.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.73 -8.41 -49.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089533388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.516 kcal (2) G-P(sol) polarization free energy of solvation -40.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds