Wall clock time and date at job start Wed Apr 1 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34867 * 119.10040 * 2 1 4 4 C 1.41667 * 119.34068 * 179.97438 * 3 2 1 5 5 O 1.22081 * 121.06739 * 180.02562 * 4 3 2 6 6 C 1.47102 * 117.86044 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.88119 * 179.97438 * 6 4 3 8 8 O 1.21627 * 120.00014 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00290 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00137 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.48724 * 325.04419 * 10 9 7 12 12 C 1.50756 * 109.55553 * 85.17487 * 10 9 7 13 13 C 1.53948 * 110.13049 * 211.96042 * 12 10 9 14 14 N 1.47604 * 112.07446 * 319.28240 * 13 12 10 15 15 C 1.36940 * 118.64417 * 137.91715 * 14 13 12 16 16 H 1.08002 * 119.99858 * 319.00494 * 15 14 13 17 17 C 1.38809 * 120.00224 * 139.01044 * 15 14 13 18 18 N 1.31624 * 119.99970 * 156.61241 * 17 15 14 19 19 Si 1.86798 * 119.99952 * 336.60970 * 17 15 14 20 20 H 1.48503 * 109.47131 * 95.53344 * 19 17 15 21 21 H 1.48498 * 109.47331 * 215.53068 * 19 17 15 22 22 H 1.48500 * 109.47158 * 335.53591 * 19 17 15 23 23 C 1.44577 * 122.71614 * 317.93563 * 14 13 12 24 24 C 1.54861 * 109.59779 * 90.70256 * 23 14 13 25 25 C 1.52999 * 109.32640 * 48.99405 * 24 23 14 26 26 C 1.53002 * 109.32924 * 168.47095 * 24 23 14 27 27 C 1.47098 * 110.32594 * 288.73688 * 24 23 14 28 28 C 1.37987 * 118.23894 * 0.25241 * 6 4 3 29 29 N 1.34345 * 120.36968 * 359.46582 * 28 6 4 30 30 H 0.96996 * 118.80779 * 180.29336 * 29 28 6 31 31 H 1.09005 * 109.46761 * 90.00133 * 1 2 3 32 32 H 1.09001 * 109.46897 * 209.99468 * 1 2 3 33 33 H 1.08999 * 109.47393 * 330.00162 * 1 2 3 34 34 H 1.07994 * 120.32988 * 359.97438 * 3 2 1 35 35 H 0.97002 * 119.99702 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.43516 * 91.70517 * 12 10 9 37 37 H 1.08994 * 109.26192 * 332.10543 * 12 10 9 38 38 H 1.09004 * 108.94730 * 198.64311 * 13 12 10 39 39 H 1.09001 * 108.95003 * 79.92390 * 13 12 10 40 40 H 0.97000 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.45570 * 210.74524 * 23 14 13 42 42 H 1.09002 * 109.44765 * 330.66932 * 23 14 13 43 43 H 1.08999 * 109.46941 * 59.99923 * 25 24 23 44 44 H 1.09000 * 109.47401 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47476 * 299.99742 * 25 24 23 46 46 H 1.08999 * 109.47230 * 60.00344 * 26 24 23 47 47 H 1.09001 * 109.47062 * 180.02562 * 26 24 23 48 48 H 1.08995 * 109.46889 * 300.00155 * 26 24 23 49 49 H 1.09004 * 108.51204 * 184.05465 * 27 24 23 50 50 H 1.08996 * 108.50809 * 301.70064 * 27 24 23 51 51 H 1.08003 * 119.81497 * 179.72775 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1844 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2724 -0.1132 0.0005 7 6 5.7436 -0.1847 0.0005 8 8 6.4021 0.8379 0.0010 9 7 6.3601 -1.3832 0.0010 10 6 7.8234 -1.4542 0.0016 11 1 8.2276 -0.6308 -0.5872 12 6 8.3327 -1.3590 1.4173 13 6 9.7014 -0.6546 1.4418 14 7 10.5667 -1.0850 0.3262 15 6 11.2987 -0.1385 -0.3398 16 1 10.8575 0.8190 -0.5742 17 6 12.6077 -0.4096 -0.7136 18 7 13.1576 0.2506 -1.7108 19 14 13.5890 -1.7113 0.1986 20 1 13.4997 -3.0010 -0.5320 21 1 15.0101 -1.2893 0.2858 22 1 13.0374 -1.8784 1.5672 23 6 10.6732 -2.4647 -0.0928 24 6 9.6191 -2.7575 -1.1889 25 6 9.6885 -1.6690 -2.2619 26 6 9.9179 -4.1145 -1.8292 27 6 8.2688 -2.7809 -0.6059 28 6 3.5076 -1.2618 -0.0054 29 7 2.1664 -1.1847 -0.0001 30 1 1.6510 -2.0064 -0.0001 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6137 2.1083 -0.0004 35 1 5.8349 -2.1987 0.0010 36 1 8.4343 -2.3609 1.8343 37 1 7.6226 -0.7900 2.0173 38 1 10.1996 -0.8820 2.3842 39 1 9.5465 0.4222 1.3744 40 1 14.0724 0.0613 -1.9717 41 1 11.6713 -2.6471 -0.4911 42 1 10.4990 -3.1181 0.7621 43 1 10.6838 -1.6599 -2.7062 44 1 8.9477 -1.8731 -3.0349 45 1 9.4838 -0.6988 -1.8091 46 1 9.8773 -4.8928 -1.0672 47 1 9.1775 -4.3228 -2.6015 48 1 10.9121 -4.0946 -2.2755 49 1 7.5600 -3.0599 -1.3856 50 1 8.2416 -3.5424 0.1735 51 1 3.9900 -2.2281 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089533388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:55 Heat of formation + Delta-G solvation = -43.808870 kcal Electronic energy + Delta-G solvation = -32140.999205 eV Core-core repulsion = 28040.252730 eV Total energy + Delta-G solvation = -4100.746475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.03480 -41.09321 -39.70464 -38.70129 -36.32231 -35.80779 -34.51200 -33.80075 -32.77043 -31.73072 -29.26904 -28.47151 -28.18625 -27.29275 -25.79950 -25.12625 -23.88429 -23.03752 -22.07170 -21.08164 -20.31187 -19.55910 -18.60415 -18.36107 -17.55785 -17.18202 -17.13688 -16.71737 -16.47572 -16.23697 -15.73924 -15.49096 -15.43257 -15.14818 -14.98211 -14.75933 -14.46029 -14.42027 -14.03043 -13.92093 -13.70324 -13.65818 -13.54097 -13.37959 -13.15707 -13.01905 -12.93889 -12.75054 -12.45352 -12.35667 -12.32860 -11.85394 -11.75096 -11.62055 -11.38226 -11.24568 -11.10159 -11.00012 -10.53301 -10.46454 -10.28664 -10.00410 -9.17546 -8.58782 -8.14998 -5.52881 -0.14649 0.36788 1.30187 1.41373 1.53504 1.80085 1.98184 2.21270 2.45033 2.84271 3.10117 3.36548 3.40565 3.65999 3.76118 3.78845 3.98503 4.00518 4.13626 4.26141 4.29034 4.38873 4.42371 4.54014 4.64505 4.75763 4.77617 4.79831 4.82395 4.84369 4.85516 4.90055 4.95809 5.02851 5.08696 5.17672 5.21270 5.21478 5.25704 5.32351 5.43684 5.44912 5.48227 5.60725 5.69787 5.77402 5.88436 6.04225 6.15258 6.23303 6.77920 7.12004 7.14044 7.51821 7.72982 8.08415 9.05804 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020175 B = 0.002807 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.555493 B = 9974.171255 C =10564.837696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.195 3.805 3 C -0.308 4.308 4 C 0.376 3.624 5 O -0.573 6.573 6 C -0.354 4.354 7 C 0.560 3.440 8 O -0.584 6.584 9 N -0.706 5.706 10 C 0.153 3.847 11 H 0.050 0.950 12 C -0.125 4.125 13 C 0.148 3.852 14 N -0.606 5.606 15 C -0.244 4.244 16 H 0.014 0.986 17 C -0.016 4.016 18 N -0.949 5.949 19 Si 0.944 3.056 20 H -0.266 1.266 21 H -0.312 1.312 22 H -0.260 1.260 23 C 0.147 3.853 24 C -0.081 4.081 25 C -0.110 4.110 26 C -0.129 4.129 27 C -0.091 4.091 28 C 0.234 3.766 29 N -0.546 5.546 30 H 0.452 0.548 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.413 0.587 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.029 0.971 42 H 0.067 0.933 43 H 0.016 0.984 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.200 -20.127 4.701 39.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 C -0.331 4.331 4 C 0.269 3.731 5 O -0.462 6.462 6 C -0.364 4.364 7 C 0.349 3.651 8 O -0.464 6.464 9 N -0.360 5.360 10 C 0.048 3.952 11 H 0.069 0.931 12 C -0.164 4.164 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.374 4.374 16 H 0.031 0.969 17 C -0.212 4.212 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.241 1.241 22 H -0.184 1.184 23 C 0.022 3.978 24 C -0.084 4.084 25 C -0.168 4.168 26 C -0.187 4.187 27 C -0.129 4.129 28 C 0.098 3.902 29 N -0.153 5.153 30 H 0.296 0.704 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.167 0.833 35 H 0.251 0.749 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.053 0.947 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -32.349 -18.841 4.657 37.724 hybrid contribution 1.348 0.566 -0.036 1.462 sum -31.001 -18.275 4.621 36.282 Atomic orbital electron populations 1.21300 0.83834 1.06852 1.06053 1.20727 0.96807 0.84321 0.89503 1.22099 0.93833 0.99785 1.17368 1.19139 0.90589 0.88134 0.75229 1.90802 1.71942 1.36058 1.47352 1.22141 0.93058 0.96519 1.24731 1.18147 0.87564 0.83525 0.75869 1.90891 1.67674 1.36797 1.50989 1.45760 1.06942 1.07403 1.75860 1.20245 0.78753 0.99865 0.96330 0.93148 1.22067 0.95672 1.01768 0.96904 1.21218 0.90557 0.96399 0.89484 1.43873 1.50004 1.03777 1.35261 1.18375 0.92787 0.96758 1.29526 0.96866 1.26071 0.97397 1.00205 0.97517 1.70056 1.14922 1.46714 1.27655 0.85844 0.76632 0.79451 0.80919 1.19223 1.24109 1.18423 1.21351 0.96469 0.84476 0.95525 1.20256 0.96580 0.95505 0.96076 1.21604 0.98631 0.99189 0.97363 1.21775 1.01018 0.94933 1.00979 1.20546 0.95992 0.94982 1.01364 1.22686 0.83095 0.99531 0.84852 1.40962 1.05353 1.10032 1.58975 0.70424 0.87320 0.86789 0.88573 0.83317 0.74855 0.88832 0.92571 0.95282 0.96448 0.93055 0.95261 0.91457 0.96445 0.93793 0.94600 0.90352 0.91024 0.94744 0.89834 0.88780 0.75774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.41 10.03 71.24 0.71 1.12 16 2 C 0.20 1.21 6.79 41.20 0.28 1.49 16 3 C -0.31 -6.12 9.57 22.34 0.21 -5.91 16 4 C 0.38 12.77 6.96 25.44 0.18 12.94 16 5 O -0.57 -28.27 16.41 13.55 0.22 -28.04 16 6 C -0.35 -9.18 6.05 -18.63 -0.11 -9.29 16 7 C 0.56 19.95 7.59 86.62 0.66 20.61 16 8 O -0.58 -30.74 15.24 15.02 0.23 -30.52 16 9 N -0.71 -17.86 4.88 -450.11 -2.20 -20.06 16 10 C 0.15 5.07 1.98 44.12 0.09 5.15 16 11 H 0.05 2.39 4.75 -2.39 -0.01 2.37 16 12 C -0.12 -4.19 5.38 30.19 0.16 -4.02 16 13 C 0.15 6.60 6.25 86.49 0.54 7.14 16 14 N -0.61 -29.78 1.37 -698.37 -0.96 -30.74 16 15 C -0.24 -14.85 7.29 84.03 0.61 -14.24 16 16 H 0.01 0.97 8.06 -2.91 -0.02 0.95 16 17 C -0.02 -0.97 5.22 84.86 0.44 -0.53 16 18 N -0.95 -62.61 13.97 21.65 0.30 -62.30 16 19 Si 0.94 47.93 25.27 68.60 1.73 49.67 16 20 H -0.27 -12.50 6.70 99.48 0.67 -11.83 16 21 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 C 0.15 6.05 3.55 87.37 0.31 6.36 16 24 C -0.08 -2.76 0.72 -53.38 -0.04 -2.80 16 25 C -0.11 -4.85 7.03 71.98 0.51 -4.34 16 26 C -0.13 -3.42 8.37 71.98 0.60 -2.82 16 27 C -0.09 -2.34 3.40 28.62 0.10 -2.25 16 28 C 0.23 1.69 10.74 84.25 0.90 2.59 16 29 N -0.55 -0.16 5.16 -182.38 -0.94 -1.10 16 30 H 0.45 -4.93 8.70 -92.71 -0.81 -5.74 16 31 H 0.11 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.11 -1.09 8.12 -2.39 -0.02 -1.11 16 33 H 0.10 -0.19 8.05 -2.39 -0.02 -0.21 16 34 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.41 4.94 6.68 -92.71 -0.62 4.32 16 36 H 0.09 2.40 7.31 -2.39 -0.02 2.39 16 37 H 0.06 1.95 7.84 -2.39 -0.02 1.93 16 38 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.02 0.89 7.89 -2.39 -0.02 0.87 16 40 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 41 H 0.03 1.36 3.57 -2.39 -0.01 1.35 16 42 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.89 4.46 -2.39 -0.01 1.88 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 1.69 8.00 -2.39 -0.02 1.67 16 50 H 0.09 1.76 7.34 -2.39 -0.02 1.74 16 51 H 0.23 -0.91 6.42 -2.91 -0.02 -0.93 16 Total: -1.00 -115.91 388.75 4.05 -111.86 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -0.50 Total: 0.03 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.16 Total: 11.21 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.80 Total: -114.21 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: 0.45 Total: -58.56 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.73 Total: 49.67 kcal Total: -115.91 4.05 -111.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089533388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.049 kcal (2) G-P(sol) polarization free energy of solvation -115.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds