Wall clock time and date at job start Wed Apr 1 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34861 * 119.10268 * 2 1 4 4 C 1.41673 * 119.34275 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06814 * 180.02562 * 4 3 2 6 6 C 1.47100 * 117.85761 * 0.02562 * 4 3 2 7 7 C 1.47293 * 120.87650 * 179.97438 * 6 4 3 8 8 O 1.21612 * 120.00469 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99815 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00202 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47170 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.59044 * 299.91461 * 11 10 9 13 13 C 1.53198 * 109.70354 * 179.55402 * 11 10 9 14 14 C 1.53038 * 109.31285 * 185.50865 * 13 11 10 15 15 C 1.53043 * 109.53653 * 61.36708 * 14 13 11 16 16 C 1.53003 * 109.49813 * 178.68101 * 15 14 13 17 17 C 1.52999 * 109.49761 * 58.58460 * 15 14 13 18 18 C 1.53189 * 109.31229 * 298.63347 * 15 14 13 19 19 N 1.46923 * 108.77851 * 54.63706 * 18 15 14 20 20 C 1.36936 * 120.63182 * 126.36457 * 19 18 15 21 21 H 1.08006 * 120.00011 * 211.12706 * 20 19 18 22 22 C 1.38810 * 119.99929 * 31.13888 * 20 19 18 23 23 N 1.31612 * 120.00221 * 13.89330 * 22 20 19 24 24 Si 1.86801 * 120.00015 * 193.89608 * 22 20 19 25 25 H 1.48503 * 109.47285 * 89.99428 * 24 22 20 26 26 H 1.48496 * 109.47594 * 209.99961 * 24 22 20 27 27 H 1.48508 * 109.47054 * 330.00076 * 24 22 20 28 28 C 1.37985 * 118.24044 * 0.24897 * 6 4 3 29 29 N 1.34347 * 120.37016 * 359.46433 * 28 6 4 30 30 H 0.96994 * 118.80928 * 180.28933 * 29 28 6 31 31 H 1.09001 * 109.47103 * 90.00016 * 1 2 3 32 32 H 1.09002 * 109.47558 * 209.99963 * 1 2 3 33 33 H 1.09004 * 109.47220 * 330.00665 * 1 2 3 34 34 H 1.08001 * 120.33289 * 359.97199 * 3 2 1 35 35 H 0.97003 * 119.99587 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46915 * 59.99949 * 10 9 7 37 37 H 1.09003 * 109.47192 * 300.00057 * 10 9 7 38 38 H 1.08999 * 109.49559 * 305.46581 * 13 11 10 39 39 H 1.09003 * 109.49560 * 65.55865 * 13 11 10 40 40 H 1.08995 * 109.46315 * 301.34664 * 14 13 11 41 41 H 1.08998 * 109.45945 * 181.38256 * 14 13 11 42 42 H 1.09001 * 109.47115 * 179.83780 * 16 15 14 43 43 H 1.08997 * 109.47129 * 299.83769 * 16 15 14 44 44 H 1.09002 * 109.46937 * 59.83763 * 16 15 14 45 45 H 1.09003 * 109.47179 * 300.16302 * 17 15 14 46 46 H 1.08998 * 109.47154 * 60.16192 * 17 15 14 47 47 H 1.08997 * 109.47335 * 180.15973 * 17 15 14 48 48 H 1.08996 * 109.58744 * 294.84510 * 18 15 14 49 49 H 1.09002 * 109.70323 * 174.49116 * 18 15 14 50 50 H 0.97003 * 120.00267 * 180.02562 * 23 22 20 51 51 H 1.07997 * 119.81631 * 179.73292 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2052 2.2326 0.0010 6 6 4.2724 -0.1134 0.0005 7 6 5.7436 -0.1848 0.0005 8 8 6.4021 0.8377 0.0001 9 7 6.3601 -1.3833 0.0010 10 6 7.8233 -1.4544 0.0016 11 6 8.2627 -2.9199 0.0027 12 1 7.8768 -3.4165 0.8930 13 6 9.7925 -3.0005 -0.0079 14 6 10.2214 -4.4631 -0.1454 15 6 9.6987 -5.0275 -1.4685 16 6 10.1557 -6.4798 -1.6202 17 6 10.2456 -4.1954 -2.6301 18 6 8.1680 -4.9699 -1.4744 19 7 7.7455 -3.5901 -1.1982 20 6 6.8865 -2.9409 -2.0443 21 1 6.9538 -1.8696 -2.1645 22 6 5.9292 -3.6594 -2.7471 23 7 5.6593 -4.9023 -2.4086 24 14 5.0241 -2.8625 -4.1737 25 1 5.7727 -3.1060 -5.4329 26 1 3.6637 -3.4473 -4.2856 27 1 4.9164 -1.4004 -3.9368 28 6 3.5076 -1.2618 -0.0053 29 7 2.1663 -1.1847 0.0000 30 1 1.6509 -2.0064 0.0000 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8901 0.5137 34 1 1.6137 2.1083 -0.0005 35 1 5.8348 -2.1988 0.0017 36 1 8.2108 -0.9586 0.8916 37 1 8.2115 -0.9590 -0.8884 38 1 10.1812 -2.4267 -0.8492 39 1 10.1848 -2.5924 0.9236 40 1 9.8117 -5.0411 0.6830 41 1 11.3094 -4.5256 -0.1285 42 1 9.7809 -6.8822 -2.5613 43 1 11.2450 -6.5203 -1.6159 44 1 9.7669 -7.0715 -0.7914 45 1 9.9207 -3.1607 -2.5204 46 1 11.3348 -4.2367 -2.6255 47 1 9.8709 -4.5960 -3.5720 48 1 7.7743 -5.6336 -0.7046 49 1 7.7924 -5.2787 -2.4500 50 1 4.9906 -5.4046 -2.9000 51 1 3.9898 -2.2281 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089719942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:49 Heat of formation + Delta-G solvation = -26.548103 kcal Electronic energy + Delta-G solvation = -32458.773903 eV Core-core repulsion = 28358.775911 eV Total energy + Delta-G solvation = -4099.997992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81185 -39.08094 -38.21293 -37.27754 -34.93453 -33.45691 -33.13168 -32.09312 -31.03427 -30.03376 -28.45170 -27.00382 -26.61614 -25.52968 -24.08940 -23.29758 -22.28925 -21.94741 -20.35849 -20.10619 -18.51413 -17.92365 -17.29261 -16.57927 -15.95991 -15.69122 -15.52734 -15.20985 -14.86007 -14.34999 -14.24263 -14.07593 -13.82195 -13.69276 -13.35302 -13.24724 -13.15158 -13.02809 -12.86795 -12.74614 -12.65958 -12.34842 -12.22198 -12.08574 -11.62141 -11.38607 -11.30547 -11.15946 -10.93058 -10.80575 -10.61224 -10.42512 -10.13778 -10.08874 -9.81411 -9.50088 -9.43807 -9.39963 -9.30576 -8.78580 -8.61021 -8.17068 -7.83879 -6.69749 -5.90622 -3.36309 1.05342 1.45354 2.75080 3.24245 3.33673 3.41539 3.47345 3.89564 4.21058 4.27597 4.36973 4.66472 4.75226 5.06372 5.08228 5.17610 5.19742 5.25539 5.43969 5.44571 5.50658 5.57386 5.62354 5.76744 5.79111 5.88868 5.97376 6.03384 6.13750 6.18216 6.25807 6.32823 6.36496 6.46256 6.46558 6.48808 6.53858 6.55386 6.66897 6.78260 6.89389 6.89772 6.95030 7.02539 7.11441 7.29938 7.36100 7.62721 7.75902 8.34916 8.40272 8.42053 9.08730 9.11506 9.72281 10.30619 11.15112 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.003764 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.780169 B = 7437.554697 C = 8506.274815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.154 3.846 3 C -0.276 4.276 4 C 0.408 3.592 5 O -0.485 6.485 6 C -0.292 4.292 7 C 0.566 3.434 8 O -0.535 6.535 9 N -0.700 5.700 10 C 0.137 3.863 11 C 0.161 3.839 12 H 0.031 0.969 13 C -0.131 4.131 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.133 4.133 17 C -0.125 4.125 18 C 0.188 3.812 19 N -0.586 5.586 20 C -0.241 4.241 21 H 0.072 0.928 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.276 1.276 28 C 0.176 3.824 29 N -0.579 5.579 30 H 0.420 0.580 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.148 0.852 35 H 0.406 0.594 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.031 0.969 47 H 0.044 0.956 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.252 0.748 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -1.785 6.114 9.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 C -0.301 4.301 4 C 0.294 3.706 5 O -0.367 6.367 6 C -0.302 4.302 7 C 0.352 3.648 8 O -0.412 6.412 9 N -0.353 5.353 10 C 0.013 3.987 11 C 0.054 3.946 12 H 0.049 0.951 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.191 4.191 17 C -0.182 4.182 18 C 0.062 3.938 19 N -0.309 5.309 20 C -0.371 4.371 21 H 0.090 0.910 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.712 3.288 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.201 1.201 28 C 0.044 3.956 29 N -0.185 5.185 30 H 0.256 0.744 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.166 0.834 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.104 0.896 50 H 0.062 0.938 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.317 -0.544 6.048 8.763 hybrid contribution -0.996 -0.756 -1.047 1.631 sum -7.313 -1.300 5.001 8.954 Atomic orbital electron populations 1.21077 0.88199 1.04629 1.04239 1.20259 0.94635 0.85733 0.94720 1.22219 0.96446 0.97086 1.14311 1.18173 0.88157 0.88056 0.76172 1.90789 1.70033 1.33302 1.42532 1.22579 0.95034 0.94691 1.17942 1.17431 0.85943 0.83905 0.77495 1.90784 1.65918 1.34365 1.50174 1.45878 1.07679 1.07770 1.73936 1.21235 0.79988 0.96696 1.00762 1.20738 0.92018 0.90910 0.90911 0.95133 1.22006 0.97424 0.96856 1.00735 1.21408 0.98636 0.95888 0.97373 1.21243 1.00351 0.93644 0.94451 1.21757 0.99488 0.96689 1.01176 1.21705 0.97735 1.01341 0.97420 1.20797 0.86643 0.85075 1.01271 1.44068 1.52067 1.12290 1.22457 1.19285 1.07526 0.92663 1.17595 0.91048 1.24999 0.97310 0.96617 1.00210 1.70013 1.34423 1.09679 1.40514 0.86578 0.78950 0.79330 0.83921 1.21323 1.21936 1.20112 1.22456 0.82289 1.00746 0.90066 1.40733 1.06155 1.08791 1.62825 0.74375 0.89369 0.90537 0.88949 0.83411 0.75632 0.92735 0.91675 0.91577 0.93070 0.92972 0.93658 0.93086 0.93970 0.93367 0.91538 0.95040 0.93689 0.96525 0.89650 0.93789 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 36.00 0.36 -0.29 16 2 C 0.15 1.52 6.78 -82.13 -0.56 0.96 16 3 C -0.28 -3.79 9.57 -39.47 -0.38 -4.16 16 4 C 0.41 7.89 6.97 -34.68 -0.24 7.64 16 5 O -0.49 -11.62 16.41 -15.17 -0.25 -11.87 16 6 C -0.29 -5.35 6.05 -102.72 -0.62 -5.97 16 7 C 0.57 12.09 7.77 -12.58 -0.10 11.99 16 8 O -0.53 -13.65 15.57 -14.75 -0.23 -13.88 16 9 N -0.70 -13.52 3.80 -61.43 -0.23 -13.75 16 10 C 0.14 2.63 4.43 -4.05 -0.02 2.61 16 11 C 0.16 2.98 3.00 -67.60 -0.20 2.78 16 12 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.13 -2.14 5.04 -26.61 -0.13 -2.27 16 14 C -0.10 -1.51 4.71 -26.69 -0.13 -1.64 16 15 C -0.10 -1.65 0.77 -154.39 -0.12 -1.77 16 16 C -0.13 -2.04 8.48 37.16 0.32 -1.73 16 17 C -0.12 -2.20 7.99 37.16 0.30 -1.90 16 18 C 0.19 3.93 3.95 -3.71 -0.01 3.92 16 19 N -0.59 -12.41 2.41 -164.78 -0.40 -12.80 16 20 C -0.24 -5.64 6.97 -15.06 -0.10 -5.75 16 21 H 0.07 1.80 5.86 -52.48 -0.31 1.49 16 22 C 0.01 0.17 4.97 -17.43 -0.09 0.09 16 23 N -0.90 -22.42 11.23 55.49 0.62 -21.80 16 24 Si 0.88 20.16 29.58 -169.99 -5.03 15.13 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.18 2.36 10.74 -16.54 -0.18 2.19 16 29 N -0.58 -5.59 5.16 -9.00 -0.05 -5.64 16 30 H 0.42 2.45 8.70 -40.82 -0.35 2.10 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.09 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.41 7.52 5.47 -40.82 -0.22 7.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.39 7.42 -51.93 -0.39 1.00 16 38 H 0.07 1.14 6.33 -51.93 -0.33 0.81 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 2.06 6.19 -51.93 -0.32 1.74 16 50 H 0.25 6.22 8.31 -40.82 -0.34 5.88 16 51 H 0.18 2.20 6.42 -52.49 -0.34 1.86 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -34.01 396.30 -9.53 -43.54 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.04 Total: 8.40 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.91 Total: 6.70 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.05 Total: -53.99 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.48 Total: -25.75 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.01 -9.53 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089719942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.994 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds