Wall clock time and date at job start Wed Apr 1 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34861 * 119.10268 * 2 1 4 4 C 1.41673 * 119.34275 * 179.97438 * 3 2 1 5 5 O 1.22084 * 121.06814 * 180.02562 * 4 3 2 6 6 C 1.47100 * 117.85761 * 0.02562 * 4 3 2 7 7 C 1.47293 * 120.87650 * 179.97438 * 6 4 3 8 8 O 1.21612 * 120.00469 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99815 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00202 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47170 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.59044 * 299.91461 * 11 10 9 13 13 C 1.53198 * 109.70354 * 179.55402 * 11 10 9 14 14 C 1.53038 * 109.31285 * 185.50865 * 13 11 10 15 15 C 1.53043 * 109.53653 * 61.36708 * 14 13 11 16 16 C 1.53003 * 109.49813 * 178.68101 * 15 14 13 17 17 C 1.52999 * 109.49761 * 58.58460 * 15 14 13 18 18 C 1.53189 * 109.31229 * 298.63347 * 15 14 13 19 19 N 1.46923 * 108.77851 * 54.63706 * 18 15 14 20 20 C 1.36936 * 120.63182 * 126.36457 * 19 18 15 21 21 H 1.08006 * 120.00011 * 211.12706 * 20 19 18 22 22 C 1.38810 * 119.99929 * 31.13888 * 20 19 18 23 23 N 1.31612 * 120.00221 * 13.89330 * 22 20 19 24 24 Si 1.86801 * 120.00015 * 193.89608 * 22 20 19 25 25 H 1.48503 * 109.47285 * 89.99428 * 24 22 20 26 26 H 1.48496 * 109.47594 * 209.99961 * 24 22 20 27 27 H 1.48508 * 109.47054 * 330.00076 * 24 22 20 28 28 C 1.37985 * 118.24044 * 0.24897 * 6 4 3 29 29 N 1.34347 * 120.37016 * 359.46433 * 28 6 4 30 30 H 0.96994 * 118.80928 * 180.28933 * 29 28 6 31 31 H 1.09001 * 109.47103 * 90.00016 * 1 2 3 32 32 H 1.09002 * 109.47558 * 209.99963 * 1 2 3 33 33 H 1.09004 * 109.47220 * 330.00665 * 1 2 3 34 34 H 1.08001 * 120.33289 * 359.97199 * 3 2 1 35 35 H 0.97003 * 119.99587 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46915 * 59.99949 * 10 9 7 37 37 H 1.09003 * 109.47192 * 300.00057 * 10 9 7 38 38 H 1.08999 * 109.49559 * 305.46581 * 13 11 10 39 39 H 1.09003 * 109.49560 * 65.55865 * 13 11 10 40 40 H 1.08995 * 109.46315 * 301.34664 * 14 13 11 41 41 H 1.08998 * 109.45945 * 181.38256 * 14 13 11 42 42 H 1.09001 * 109.47115 * 179.83780 * 16 15 14 43 43 H 1.08997 * 109.47129 * 299.83769 * 16 15 14 44 44 H 1.09002 * 109.46937 * 59.83763 * 16 15 14 45 45 H 1.09003 * 109.47179 * 300.16302 * 17 15 14 46 46 H 1.08998 * 109.47154 * 60.16192 * 17 15 14 47 47 H 1.08997 * 109.47335 * 180.15973 * 17 15 14 48 48 H 1.08996 * 109.58744 * 294.84510 * 18 15 14 49 49 H 1.09002 * 109.70323 * 174.49116 * 18 15 14 50 50 H 0.97003 * 120.00267 * 180.02562 * 23 22 20 51 51 H 1.07997 * 119.81631 * 179.73292 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1843 0.0006 5 8 4.2052 2.2326 0.0010 6 6 4.2724 -0.1134 0.0005 7 6 5.7436 -0.1848 0.0005 8 8 6.4021 0.8377 0.0001 9 7 6.3601 -1.3833 0.0010 10 6 7.8233 -1.4544 0.0016 11 6 8.2627 -2.9199 0.0027 12 1 7.8768 -3.4165 0.8930 13 6 9.7925 -3.0005 -0.0079 14 6 10.2214 -4.4631 -0.1454 15 6 9.6987 -5.0275 -1.4685 16 6 10.1557 -6.4798 -1.6202 17 6 10.2456 -4.1954 -2.6301 18 6 8.1680 -4.9699 -1.4744 19 7 7.7455 -3.5901 -1.1982 20 6 6.8865 -2.9409 -2.0443 21 1 6.9538 -1.8696 -2.1645 22 6 5.9292 -3.6594 -2.7471 23 7 5.6593 -4.9023 -2.4086 24 14 5.0241 -2.8625 -4.1737 25 1 5.7727 -3.1060 -5.4329 26 1 3.6637 -3.4473 -4.2856 27 1 4.9164 -1.4004 -3.9368 28 6 3.5076 -1.2618 -0.0053 29 7 2.1663 -1.1847 0.0000 30 1 1.6509 -2.0064 0.0000 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8901 0.5137 34 1 1.6137 2.1083 -0.0005 35 1 5.8348 -2.1988 0.0017 36 1 8.2108 -0.9586 0.8916 37 1 8.2115 -0.9590 -0.8884 38 1 10.1812 -2.4267 -0.8492 39 1 10.1848 -2.5924 0.9236 40 1 9.8117 -5.0411 0.6830 41 1 11.3094 -4.5256 -0.1285 42 1 9.7809 -6.8822 -2.5613 43 1 11.2450 -6.5203 -1.6159 44 1 9.7669 -7.0715 -0.7914 45 1 9.9207 -3.1607 -2.5204 46 1 11.3348 -4.2367 -2.6255 47 1 9.8709 -4.5960 -3.5720 48 1 7.7743 -5.6336 -0.7046 49 1 7.7924 -5.2787 -2.4500 50 1 4.9906 -5.4046 -2.9000 51 1 3.9898 -2.2281 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089719942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:48 Heat of formation + Delta-G solvation = -47.783000 kcal Electronic energy + Delta-G solvation = -32459.694718 eV Core-core repulsion = 28358.775911 eV Total energy + Delta-G solvation = -4100.918806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00050 -40.61576 -39.73232 -38.70624 -36.53301 -34.99210 -34.45737 -33.49743 -32.34163 -31.72070 -29.51166 -28.23795 -28.00692 -27.29011 -25.36760 -24.72881 -23.83543 -23.08898 -21.78037 -21.70823 -19.85301 -19.43138 -18.53677 -18.15288 -17.28306 -17.18093 -17.05025 -16.46019 -16.40155 -15.98965 -15.62525 -15.58335 -15.25920 -15.17067 -14.74985 -14.67403 -14.44087 -14.32494 -13.95256 -13.89160 -13.74042 -13.67539 -13.42833 -13.11503 -13.03613 -13.00746 -12.85192 -12.73366 -12.49936 -12.47938 -12.20128 -12.09648 -11.84654 -11.60722 -11.24843 -11.11844 -10.92889 -10.86010 -10.49444 -10.45672 -10.27822 -9.82562 -9.16287 -8.48490 -7.78137 -5.23824 -0.16528 0.33145 1.35637 1.44510 1.53606 1.76707 1.98052 2.38837 2.50880 2.84287 3.33934 3.35895 3.61827 3.64315 3.79921 3.97533 4.03785 4.06779 4.21564 4.27538 4.34851 4.41346 4.45879 4.54723 4.70306 4.72739 4.76337 4.81906 4.85691 4.88722 4.95200 4.97386 5.08175 5.12040 5.15865 5.16571 5.18843 5.28164 5.32644 5.42615 5.50887 5.56878 5.62250 5.68561 5.70370 5.77422 5.84918 5.92387 6.06529 6.50178 6.81273 7.08741 7.25666 7.48103 7.93300 8.47204 9.24704 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.003764 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.780169 B = 7437.554697 C = 8506.274815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.190 3.810 3 C -0.304 4.304 4 C 0.386 3.614 5 O -0.563 6.563 6 C -0.346 4.346 7 C 0.560 3.440 8 O -0.590 6.590 9 N -0.690 5.690 10 C 0.141 3.859 11 C 0.165 3.835 12 H 0.039 0.961 13 C -0.127 4.127 14 C -0.090 4.090 15 C -0.093 4.093 16 C -0.128 4.128 17 C -0.119 4.119 18 C 0.197 3.803 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.050 0.950 22 C -0.017 4.017 23 N -0.914 5.914 24 Si 0.920 3.080 25 H -0.301 1.301 26 H -0.279 1.279 27 H -0.294 1.294 28 C 0.219 3.781 29 N -0.552 5.552 30 H 0.447 0.553 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.029 0.971 48 H 0.002 0.998 49 H 0.050 0.950 50 H 0.250 0.750 51 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 -4.487 7.198 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 C -0.327 4.327 4 C 0.279 3.721 5 O -0.452 6.452 6 C -0.357 4.357 7 C 0.349 3.651 8 O -0.472 6.472 9 N -0.342 5.342 10 C 0.017 3.983 11 C 0.059 3.941 12 H 0.056 0.944 13 C -0.166 4.166 14 C -0.127 4.127 15 C -0.095 4.095 16 C -0.185 4.185 17 C -0.176 4.176 18 C 0.072 3.928 19 N -0.317 5.317 20 C -0.358 4.358 21 H 0.067 0.933 22 C -0.214 4.214 23 N -0.560 5.560 24 Si 0.751 3.249 25 H -0.229 1.229 26 H -0.204 1.204 27 H -0.221 1.221 28 C 0.083 3.917 29 N -0.158 5.158 30 H 0.288 0.712 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.048 0.952 48 H 0.020 0.980 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.109 -3.338 7.143 11.311 hybrid contribution -0.563 -0.035 -1.396 1.506 sum -8.672 -3.374 5.747 10.937 Atomic orbital electron populations 1.21306 0.83444 1.07066 1.05996 1.20916 0.97081 0.84143 0.89766 1.22129 0.93713 0.99623 1.17271 1.18930 0.90511 0.87480 0.75173 1.90735 1.71774 1.35252 1.47417 1.22337 0.93803 0.96295 1.23243 1.17970 0.87424 0.83414 0.76342 1.90733 1.67418 1.36100 1.52987 1.45801 1.07754 1.07422 1.73235 1.21207 0.80043 0.97222 0.99849 1.20827 0.93660 0.89713 0.89864 0.94352 1.21967 0.95292 0.97688 1.01679 1.21379 1.00132 0.94929 0.96283 1.21175 0.97521 0.95362 0.95451 1.21697 1.00951 0.94862 1.01023 1.21631 0.99296 0.99793 0.96864 1.20592 0.89212 0.84307 0.98682 1.44161 1.51929 1.12448 1.23193 1.19094 1.07362 0.91698 1.17694 0.93265 1.25195 0.98075 0.96915 1.01247 1.70071 1.34924 1.09964 1.41028 0.86033 0.78972 0.77642 0.82214 1.22946 1.20436 1.22097 1.22469 0.83649 0.99558 0.85992 1.40978 1.05022 1.10442 1.59395 0.71152 0.87562 0.87213 0.87490 0.82014 0.75120 0.91742 0.94526 0.92622 0.90527 0.92307 0.91127 0.93935 0.91614 0.92740 0.93812 0.92450 0.95200 0.97987 0.93107 0.94024 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.03 71.23 0.71 0.12 16 2 C 0.19 3.09 6.78 41.20 0.28 3.37 16 3 C -0.30 -8.19 9.57 22.34 0.21 -7.98 16 4 C 0.39 15.83 6.97 25.45 0.18 16.01 16 5 O -0.56 -29.60 16.41 13.55 0.22 -29.38 16 6 C -0.35 -13.19 6.05 -18.63 -0.11 -13.30 16 7 C 0.56 25.46 7.77 86.62 0.67 26.14 16 8 O -0.59 -32.74 15.57 15.07 0.23 -32.51 16 9 N -0.69 -27.66 3.80 -466.51 -1.77 -29.43 16 10 C 0.14 5.58 4.43 86.38 0.38 5.96 16 11 C 0.17 6.05 3.00 44.97 0.14 6.18 16 12 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 13 C -0.13 -3.94 5.04 30.67 0.15 -3.79 16 14 C -0.09 -2.58 4.71 30.62 0.14 -2.43 16 15 C -0.09 -3.09 0.77 -52.10 -0.04 -3.13 16 16 C -0.13 -3.59 8.48 71.98 0.61 -2.98 16 17 C -0.12 -4.06 7.99 71.98 0.58 -3.49 16 18 C 0.20 8.22 3.95 86.36 0.34 8.56 16 19 N -0.59 -25.28 2.41 -675.23 -1.63 -26.90 16 20 C -0.23 -10.89 6.97 84.03 0.59 -10.30 16 21 H 0.05 2.60 5.86 -2.91 -0.02 2.58 16 22 C -0.02 -0.84 4.97 84.86 0.42 -0.42 16 23 N -0.91 -45.20 11.23 21.65 0.24 -44.95 16 24 Si 0.92 41.79 29.58 68.60 2.03 43.82 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 28 C 0.22 5.55 10.74 84.25 0.90 6.46 16 29 N -0.55 -8.57 5.16 -182.39 -0.94 -9.51 16 30 H 0.45 2.71 8.70 -92.71 -0.81 1.90 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 -0.05 8.12 -2.39 -0.02 -0.07 16 33 H 0.11 0.39 8.06 -2.38 -0.02 0.37 16 34 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.41 15.34 5.47 -92.71 -0.51 14.83 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.04 1.65 7.42 -2.39 -0.02 1.64 16 38 H 0.06 1.87 6.33 -2.39 -0.02 1.85 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 1.68 5.97 -2.39 -0.01 1.67 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.05 2.48 6.19 -2.39 -0.01 2.46 16 50 H 0.25 12.18 8.31 -92.71 -0.77 11.41 16 51 H 0.19 4.36 6.42 -2.91 -0.02 4.34 16 Total: -1.00 -83.36 396.30 4.19 -79.16 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.36 Total: 24.73 kcal Atomic # 6 Polarization: 18.81 SS G_CDS: 6.16 Total: 24.97 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.10 Total: -110.80 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: 0.46 Total: -61.89 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -83.36 4.19 -79.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089719942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.381 kcal (2) G-P(sol) polarization free energy of solvation -83.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds