Wall clock time and date at job start Wed Apr 1 2020 04:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30008 * 127.34107 * 2 1 4 4 O 1.20653 * 112.30621 * 180.29180 * 3 2 1 5 5 C 1.33499 * 113.15311 * 359.72625 * 4 3 2 6 6 C 1.50703 * 126.82951 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46882 * 299.97693 * 6 5 4 8 8 C 1.52995 * 109.46935 * 59.97524 * 6 5 4 9 9 C 1.37359 * 106.34181 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56435 * 179.97438 * 9 5 4 11 11 O 1.21613 * 119.99746 * 90.00404 * 10 9 5 12 12 N 1.34777 * 120.00231 * 269.73004 * 10 9 5 13 13 C 1.47216 * 126.70185 * 359.95680 * 12 10 9 14 14 C 1.54060 * 106.23342 * 148.69287 * 13 12 10 15 15 H 1.09000 * 111.72354 * 140.80497 * 14 13 12 16 16 C 1.53789 * 109.51854 * 266.26960 * 14 13 12 17 17 N 1.47208 * 106.37454 * 131.52445 * 16 14 13 18 18 C 1.36942 * 126.70160 * 148.73070 * 17 16 14 19 19 H 1.08002 * 120.00350 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99807 * 0.02562 * 18 17 16 21 21 N 1.31626 * 119.99829 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46974 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47460 * 119.99992 * 22 20 18 25 25 H 1.48501 * 109.47308 * 240.00061 * 22 20 18 26 26 C 1.48978 * 107.08551 * 329.18106 * 17 16 14 27 27 C 1.53779 * 105.49609 * 30.34547 * 26 17 16 28 28 C 1.53000 * 111.86049 * 104.54039 * 27 26 17 29 29 C 1.47214 * 126.70116 * 180.28056 * 12 10 9 30 30 H 1.08995 * 109.47207 * 270.13548 * 1 2 3 31 31 H 1.09002 * 109.46402 * 30.12681 * 1 2 3 32 32 H 1.08996 * 109.47593 * 150.12601 * 1 2 3 33 33 H 1.08993 * 109.47395 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47216 * 60.00464 * 7 6 5 35 35 H 1.09001 * 109.46782 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47550 * 300.00339 * 7 6 5 37 37 H 1.09003 * 109.46870 * 179.97438 * 8 6 5 38 38 H 1.08993 * 109.47833 * 300.00013 * 8 6 5 39 39 H 1.09001 * 109.47030 * 60.00367 * 8 6 5 40 40 H 1.09000 * 110.07496 * 268.00067 * 13 12 10 41 41 H 1.09003 * 110.07229 * 29.53921 * 13 12 10 42 42 H 1.08989 * 110.07436 * 250.75717 * 16 14 13 43 43 H 1.09003 * 110.07043 * 12.24165 * 16 14 13 44 44 H 0.96998 * 119.99577 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.07949 * 271.62075 * 26 17 16 46 46 H 1.08997 * 110.91932 * 149.51217 * 26 17 16 47 47 H 1.09002 * 109.46913 * 182.04253 * 28 27 26 48 48 H 1.08998 * 109.46551 * 302.04255 * 28 27 26 49 49 H 1.09000 * 109.47249 * 62.04164 * 28 27 26 50 50 H 1.08998 * 110.07121 * 330.45943 * 29 12 10 51 51 H 1.09000 * 110.07911 * 92.00655 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7206 -0.0057 5 6 3.6493 -0.6010 -0.0047 6 6 4.9711 -1.3249 -0.0100 7 6 5.7585 -0.9396 -1.2640 8 6 5.7711 -0.9350 1.2345 9 6 2.3991 -1.1697 0.0022 10 6 2.0399 -2.5993 0.0055 11 8 1.8970 -3.1878 1.0601 12 7 1.8645 -3.2528 -1.1601 13 6 1.9925 -2.6878 -2.5134 14 6 2.4884 -3.8352 -3.4140 15 1 2.0099 -3.8151 -4.3932 16 6 4.0229 -3.7905 -3.5049 17 7 4.4941 -5.1610 -3.2463 18 6 5.6141 -5.7531 -3.7662 19 1 5.8587 -6.7714 -3.5019 20 6 6.4350 -5.0446 -4.6327 21 7 6.1372 -3.8035 -4.9544 22 14 7.9624 -5.8525 -5.3424 23 1 8.0723 -7.2412 -4.8278 24 1 7.8653 -5.8794 -6.8240 25 1 9.1643 -5.0792 -4.9391 26 6 3.5152 -5.7923 -2.3175 27 6 2.1626 -5.1342 -2.6366 28 6 1.2501 -6.0661 -3.4365 29 6 1.5009 -4.6693 -1.3284 30 1 -0.3633 0.0024 1.0276 31 1 -0.3632 0.8889 -0.5158 32 1 -0.3634 -0.8910 -0.5118 33 1 4.7961 -2.4007 -0.0071 34 1 5.9336 0.1363 -1.2668 35 1 6.7147 -1.4629 -1.2676 36 1 5.1886 -1.2172 -2.1506 37 1 6.7269 -1.4590 1.2308 38 1 5.9461 0.1407 1.2317 39 1 5.2101 -1.2096 2.1278 40 1 1.0245 -2.3273 -2.8615 41 1 2.7170 -1.8733 -2.5118 42 1 4.3295 -3.4711 -4.5009 43 1 4.4225 -3.1087 -2.7542 44 1 6.7111 -3.3084 -5.5596 45 1 3.7955 -5.5893 -1.2840 46 1 3.4570 -6.8677 -2.4856 47 1 0.3196 -5.5496 -3.6719 48 1 1.7485 -6.3566 -4.3613 49 1 1.0323 -6.9561 -2.8461 50 1 1.8782 -5.2546 -0.4899 51 1 0.4181 -4.7719 -1.3998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091755247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:42 Heat of formation + Delta-G solvation = 46.562591 kcal Electronic energy + Delta-G solvation = -33293.850979 eV Core-core repulsion = 29197.023304 eV Total energy + Delta-G solvation = -4096.827675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.83944 -40.29336 -38.27432 -35.98657 -34.95190 -34.55410 -32.87275 -31.00943 -30.80100 -30.00457 -28.87073 -27.10092 -26.85517 -25.99272 -25.17653 -23.96008 -22.85398 -22.35873 -20.33879 -19.94764 -19.14007 -18.73416 -17.72024 -17.20559 -16.83490 -16.25937 -15.79801 -15.52424 -15.06193 -14.76008 -14.18045 -13.84472 -13.81081 -13.57362 -13.54298 -13.40335 -13.16922 -13.13402 -12.94661 -12.75461 -12.61586 -12.14998 -12.10007 -11.81725 -11.66795 -11.53347 -11.44404 -11.29609 -11.18215 -11.03239 -10.96763 -10.84969 -10.78832 -10.28959 -10.16064 -10.06248 -9.99726 -9.87396 -9.79012 -9.53607 -9.31800 -8.76941 -8.52170 -6.93434 -5.69947 -3.14042 1.36741 1.90653 2.48458 2.80344 3.24937 3.34996 3.41640 3.43227 4.05000 4.19649 4.41372 4.56269 4.80523 4.86010 4.91199 5.05985 5.09248 5.13967 5.22157 5.31732 5.39237 5.42307 5.47575 5.50070 5.53391 5.58144 5.65153 5.69624 5.70024 5.81337 5.83578 5.92321 5.92682 5.96853 5.98075 6.09814 6.11827 6.21809 6.23215 6.30254 6.35975 6.44363 6.50769 6.59095 6.72711 6.86255 7.37439 7.53620 7.61227 7.75504 8.17709 8.23366 8.31911 9.15267 9.74553 10.42414 11.31053 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.004416 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.675654 B = 6339.032458 C = 7820.757710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.052 3.948 3 N -0.359 5.359 4 O 0.097 5.903 5 C 0.039 3.961 6 C -0.017 4.017 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.246 4.246 10 C 0.618 3.382 11 O -0.534 6.534 12 N -0.597 5.597 13 C 0.110 3.890 14 C -0.115 4.115 15 H 0.087 0.913 16 C 0.147 3.853 17 N -0.595 5.595 18 C -0.216 4.216 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.141 3.859 27 C -0.086 4.086 28 C -0.122 4.122 29 C 0.119 3.881 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.080 0.920 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 5.529 6.496 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 N -0.066 5.066 4 O 0.037 5.963 5 C -0.025 4.025 6 C -0.036 4.036 7 C -0.203 4.203 8 C -0.204 4.204 9 C -0.253 4.253 10 C 0.405 3.595 11 O -0.411 6.411 12 N -0.329 5.329 13 C -0.013 4.013 14 C -0.135 4.135 15 H 0.106 0.894 16 C 0.022 3.978 17 N -0.319 5.319 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.015 3.985 27 C -0.088 4.088 28 C -0.180 4.180 29 C -0.003 4.003 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.382 6.609 7.006 13.446 hybrid contribution 0.605 -1.117 -0.356 1.319 sum -8.777 5.492 6.650 12.306 Atomic orbital electron populations 1.20175 0.85379 1.03902 1.03688 1.24657 0.98383 0.86638 1.01383 1.73585 0.89241 1.23393 1.20369 1.84493 1.21253 1.22681 1.67902 1.24761 0.97069 0.83349 0.97318 1.19968 0.86752 0.98741 0.98147 1.21873 1.00857 1.01622 0.95961 1.21866 1.00237 1.02270 0.96054 1.21781 0.92787 0.94996 1.15736 1.16397 0.76781 0.83783 0.82509 1.90802 1.51729 1.68156 1.30461 1.48345 1.67345 1.11646 1.05585 1.22274 1.00418 0.97553 0.81091 1.23180 1.01743 0.91605 0.97013 0.89431 1.21961 0.85424 0.86288 1.04167 1.44906 1.24953 1.10527 1.51554 1.19150 0.98085 0.96665 1.20502 0.90430 1.24719 0.99293 0.96241 1.00306 1.69592 1.38659 1.09344 1.39428 0.86023 0.82654 0.78312 0.78676 1.20601 1.21789 1.21781 1.21778 0.87249 0.95983 0.93493 1.22156 0.96901 0.96190 0.93574 1.21639 0.98010 0.98177 1.00182 1.22152 0.98735 0.81037 0.98399 0.89800 0.89988 0.90067 0.87855 0.92216 0.90670 0.90975 0.90856 0.91780 0.92239 0.92062 0.90615 0.85972 0.97255 0.93741 0.96097 0.93603 0.93101 0.91559 0.92856 0.90164 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.49 36.01 0.38 -0.40 16 2 C 0.05 0.73 7.59 -79.77 -0.61 0.13 16 3 N -0.36 -5.37 12.01 34.78 0.42 -4.96 16 4 O 0.10 1.44 11.06 18.64 0.21 1.65 16 5 C 0.04 0.57 6.06 -34.63 -0.21 0.36 16 6 C -0.02 -0.23 3.33 -91.77 -0.31 -0.54 16 7 C -0.15 -2.07 9.18 37.16 0.34 -1.73 16 8 C -0.15 -1.72 9.17 37.15 0.34 -1.38 16 9 C -0.25 -3.84 5.11 -102.89 -0.53 -4.36 16 10 C 0.62 10.52 7.36 -12.53 -0.09 10.43 16 11 O -0.53 -10.55 17.34 5.27 0.09 -10.46 16 12 N -0.60 -9.41 3.32 -172.67 -0.57 -9.98 16 13 C 0.11 1.64 6.18 -3.10 -0.02 1.62 16 14 C -0.11 -1.94 3.68 -88.68 -0.33 -2.27 16 15 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 16 C 0.15 3.20 5.73 -3.25 -0.02 3.18 16 17 N -0.60 -14.07 3.43 -169.68 -0.58 -14.66 16 18 C -0.22 -5.64 10.33 -15.06 -0.16 -5.80 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -24.89 10.08 55.49 0.56 -24.33 16 22 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.14 2.76 6.51 -2.26 -0.01 2.75 16 27 C -0.09 -1.37 1.08 -152.72 -0.16 -1.54 16 28 C -0.12 -1.66 8.43 37.16 0.31 -1.34 16 29 C 0.12 1.78 5.97 -3.24 -0.02 1.76 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.66 7.70 -51.93 -0.40 1.26 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.18 7.12 -51.93 -0.37 0.81 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.20 6.90 -51.93 -0.36 0.84 16 42 H 0.12 3.06 5.45 -51.94 -0.28 2.78 16 43 H 0.01 0.22 6.39 -51.93 -0.33 -0.11 16 44 H 0.25 6.65 8.31 -40.82 -0.34 6.32 16 45 H 0.02 0.44 7.38 -51.93 -0.38 0.05 16 46 H 0.05 0.87 7.82 -51.93 -0.41 0.47 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 1.28 7.26 -51.93 -0.38 0.90 16 51 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -29.88 405.39 -8.32 -38.20 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.35 Total: 1.82 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.18 Total: 0.50 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.18 Total: -53.92 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.30 Total: -8.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.88 -8.32 -38.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091755247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.761 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds