Wall clock time and date at job start Wed Apr 1 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30008 * 127.34107 * 2 1 4 4 O 1.20653 * 112.30621 * 180.29180 * 3 2 1 5 5 C 1.33499 * 113.15311 * 359.72625 * 4 3 2 6 6 C 1.50703 * 126.82951 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46882 * 299.97693 * 6 5 4 8 8 C 1.52995 * 109.46935 * 59.97524 * 6 5 4 9 9 C 1.37359 * 106.34181 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56435 * 179.97438 * 9 5 4 11 11 O 1.21613 * 119.99746 * 90.00404 * 10 9 5 12 12 N 1.34777 * 120.00231 * 269.73004 * 10 9 5 13 13 C 1.47216 * 126.70185 * 359.95680 * 12 10 9 14 14 C 1.54060 * 106.23342 * 148.69287 * 13 12 10 15 15 H 1.09000 * 111.72354 * 140.80497 * 14 13 12 16 16 C 1.53789 * 109.51854 * 266.26960 * 14 13 12 17 17 N 1.47208 * 106.37454 * 131.52445 * 16 14 13 18 18 C 1.36942 * 126.70160 * 148.73070 * 17 16 14 19 19 H 1.08002 * 120.00350 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99807 * 0.02562 * 18 17 16 21 21 N 1.31626 * 119.99829 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46974 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47460 * 119.99992 * 22 20 18 25 25 H 1.48501 * 109.47308 * 240.00061 * 22 20 18 26 26 C 1.48978 * 107.08551 * 329.18106 * 17 16 14 27 27 C 1.53779 * 105.49609 * 30.34547 * 26 17 16 28 28 C 1.53000 * 111.86049 * 104.54039 * 27 26 17 29 29 C 1.47214 * 126.70116 * 180.28056 * 12 10 9 30 30 H 1.08995 * 109.47207 * 270.13548 * 1 2 3 31 31 H 1.09002 * 109.46402 * 30.12681 * 1 2 3 32 32 H 1.08996 * 109.47593 * 150.12601 * 1 2 3 33 33 H 1.08993 * 109.47395 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.47216 * 60.00464 * 7 6 5 35 35 H 1.09001 * 109.46782 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47550 * 300.00339 * 7 6 5 37 37 H 1.09003 * 109.46870 * 179.97438 * 8 6 5 38 38 H 1.08993 * 109.47833 * 300.00013 * 8 6 5 39 39 H 1.09001 * 109.47030 * 60.00367 * 8 6 5 40 40 H 1.09000 * 110.07496 * 268.00067 * 13 12 10 41 41 H 1.09003 * 110.07229 * 29.53921 * 13 12 10 42 42 H 1.08989 * 110.07436 * 250.75717 * 16 14 13 43 43 H 1.09003 * 110.07043 * 12.24165 * 16 14 13 44 44 H 0.96998 * 119.99577 * 179.97438 * 21 20 18 45 45 H 1.08996 * 110.07949 * 271.62075 * 26 17 16 46 46 H 1.08997 * 110.91932 * 149.51217 * 26 17 16 47 47 H 1.09002 * 109.46913 * 182.04253 * 28 27 26 48 48 H 1.08998 * 109.46551 * 302.04255 * 28 27 26 49 49 H 1.09000 * 109.47249 * 62.04164 * 28 27 26 50 50 H 1.08998 * 110.07121 * 330.45943 * 29 12 10 51 51 H 1.09000 * 110.07911 * 92.00655 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7206 -0.0057 5 6 3.6493 -0.6010 -0.0047 6 6 4.9711 -1.3249 -0.0100 7 6 5.7585 -0.9396 -1.2640 8 6 5.7711 -0.9350 1.2345 9 6 2.3991 -1.1697 0.0022 10 6 2.0399 -2.5993 0.0055 11 8 1.8970 -3.1878 1.0601 12 7 1.8645 -3.2528 -1.1601 13 6 1.9925 -2.6878 -2.5134 14 6 2.4884 -3.8352 -3.4140 15 1 2.0099 -3.8151 -4.3932 16 6 4.0229 -3.7905 -3.5049 17 7 4.4941 -5.1610 -3.2463 18 6 5.6141 -5.7531 -3.7662 19 1 5.8587 -6.7714 -3.5019 20 6 6.4350 -5.0446 -4.6327 21 7 6.1372 -3.8035 -4.9544 22 14 7.9624 -5.8525 -5.3424 23 1 8.0723 -7.2412 -4.8278 24 1 7.8653 -5.8794 -6.8240 25 1 9.1643 -5.0792 -4.9391 26 6 3.5152 -5.7923 -2.3175 27 6 2.1626 -5.1342 -2.6366 28 6 1.2501 -6.0661 -3.4365 29 6 1.5009 -4.6693 -1.3284 30 1 -0.3633 0.0024 1.0276 31 1 -0.3632 0.8889 -0.5158 32 1 -0.3634 -0.8910 -0.5118 33 1 4.7961 -2.4007 -0.0071 34 1 5.9336 0.1363 -1.2668 35 1 6.7147 -1.4629 -1.2676 36 1 5.1886 -1.2172 -2.1506 37 1 6.7269 -1.4590 1.2308 38 1 5.9461 0.1407 1.2317 39 1 5.2101 -1.2096 2.1278 40 1 1.0245 -2.3273 -2.8615 41 1 2.7170 -1.8733 -2.5118 42 1 4.3295 -3.4711 -4.5009 43 1 4.4225 -3.1087 -2.7542 44 1 6.7111 -3.3084 -5.5596 45 1 3.7955 -5.5893 -1.2840 46 1 3.4570 -6.8677 -2.4856 47 1 0.3196 -5.5496 -3.6719 48 1 1.7485 -6.3566 -4.3613 49 1 1.0323 -6.9561 -2.8461 50 1 1.8782 -5.2546 -0.4899 51 1 0.4181 -4.7719 -1.3998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091755247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:41 Heat of formation + Delta-G solvation = 30.810956 kcal Electronic energy + Delta-G solvation = -33294.534021 eV Core-core repulsion = 29197.023304 eV Total energy + Delta-G solvation = -4097.510717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.97868 -41.65044 -39.69507 -37.14181 -36.56823 -35.66886 -34.44955 -32.56129 -32.04039 -31.57597 -29.80809 -28.20203 -28.04794 -27.73142 -26.69250 -25.27287 -23.98407 -23.84813 -21.99065 -21.14862 -20.38854 -20.04272 -18.91333 -18.69989 -18.40230 -17.52757 -17.11155 -16.82386 -16.70903 -16.16721 -15.57660 -15.53132 -15.12659 -14.88790 -14.83568 -14.42155 -14.30109 -14.21187 -14.08876 -13.85539 -13.79975 -13.45525 -13.37949 -13.26524 -13.15583 -12.97883 -12.74804 -12.69714 -12.61788 -12.40771 -12.36303 -12.28522 -11.96473 -11.93832 -11.80078 -11.55067 -11.51219 -11.33489 -11.13970 -10.99106 -10.74128 -10.51101 -9.81473 -8.86392 -7.69897 -5.16425 0.18222 0.79495 1.18007 1.48276 1.49837 1.58483 1.59110 2.02897 2.51249 2.99653 3.07757 3.30757 3.37176 3.47553 3.64435 3.69355 3.85042 3.91975 3.95793 3.96889 4.10583 4.19548 4.27581 4.35015 4.39355 4.50671 4.56486 4.60213 4.66482 4.69530 4.71873 4.73266 4.76206 4.79980 4.81701 4.87080 4.93291 4.99084 5.03651 5.07097 5.17917 5.19271 5.21070 5.24505 5.33349 5.49435 5.54374 5.66866 5.86295 6.31233 6.41032 6.86597 7.08465 7.16291 7.80434 8.48375 9.27903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.004416 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.675654 B = 6339.032458 C = 7820.757710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.371 5.371 4 O 0.093 5.907 5 C 0.041 3.959 6 C -0.013 4.013 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.266 4.266 10 C 0.621 3.379 11 O -0.567 6.567 12 N -0.596 5.596 13 C 0.117 3.883 14 C -0.108 4.108 15 H 0.103 0.897 16 C 0.154 3.846 17 N -0.616 5.616 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.057 4.057 21 N -0.940 5.940 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.295 1.295 26 C 0.138 3.862 27 C -0.075 4.075 28 C -0.116 4.116 29 C 0.121 3.879 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.090 0.910 43 H -0.012 1.012 44 H 0.246 0.754 45 H 0.005 0.995 46 H 0.050 0.950 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 5.714 6.553 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 N -0.080 5.080 4 O 0.035 5.965 5 C -0.023 4.023 6 C -0.033 4.033 7 C -0.194 4.194 8 C -0.199 4.199 9 C -0.273 4.273 10 C 0.408 3.592 11 O -0.447 6.447 12 N -0.327 5.327 13 C -0.005 4.005 14 C -0.128 4.128 15 H 0.121 0.879 16 C 0.029 3.971 17 N -0.341 5.341 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.590 5.590 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.222 1.222 26 C 0.013 3.987 27 C -0.077 4.077 28 C -0.173 4.173 29 C -0.001 4.001 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.006 0.994 44 H 0.056 0.944 45 H 0.023 0.977 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.417 6.781 7.056 15.037 hybrid contribution 1.277 -1.198 -0.357 1.787 sum -10.140 5.583 6.699 13.374 Atomic orbital electron populations 1.20377 0.82725 1.05259 1.04874 1.25202 0.99884 0.85498 0.99686 1.73574 0.89284 1.23739 1.21390 1.84482 1.21523 1.22284 1.68206 1.24829 0.97151 0.83592 0.96740 1.19882 0.87036 0.97138 0.99196 1.21767 0.99990 1.02723 0.94916 1.21852 1.00157 1.03386 0.94494 1.21825 0.93592 0.94864 1.17029 1.16514 0.76198 0.84195 0.82264 1.90777 1.53417 1.68994 1.31554 1.48401 1.66640 1.12075 1.05595 1.22255 1.01866 0.96191 0.80218 1.23039 0.98004 0.93221 0.98536 0.87919 1.21714 0.88885 0.85132 1.01407 1.45163 1.25242 1.11466 1.52179 1.19417 0.99250 0.96778 1.20477 0.90652 1.25401 1.01767 0.96853 1.01002 1.69845 1.39195 1.10210 1.39754 0.85130 0.79472 0.77792 0.77666 1.19685 1.21871 1.22215 1.21909 0.88562 0.96439 0.91812 1.22073 0.95392 0.95809 0.94398 1.21602 0.98213 0.98495 0.99004 1.22222 1.00514 0.80294 0.97055 0.88602 0.88120 0.89163 0.90530 0.90244 0.91283 0.93707 0.89874 0.90221 0.92377 0.88288 0.91963 0.89229 0.99447 0.94354 0.97703 0.93207 0.90131 0.93350 0.91142 0.91423 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.49 71.24 0.75 -0.62 16 2 C 0.06 1.60 7.59 45.16 0.34 1.95 16 3 N -0.37 -10.66 12.01 -44.79 -0.54 -11.20 16 4 O 0.09 2.71 11.06 76.94 0.85 3.56 16 5 C 0.04 1.21 6.06 25.48 0.15 1.37 16 6 C -0.01 -0.37 3.33 -11.54 -0.04 -0.41 16 7 C -0.14 -4.05 9.18 71.98 0.66 -3.39 16 8 C -0.14 -3.28 9.17 71.98 0.66 -2.62 16 9 C -0.27 -8.18 5.11 -18.74 -0.10 -8.27 16 10 C 0.62 20.80 7.36 86.66 0.64 21.44 16 11 O -0.57 -22.35 17.34 -4.07 -0.07 -22.43 16 12 N -0.60 -18.01 3.32 -818.47 -2.72 -20.73 16 13 C 0.12 3.31 6.18 86.60 0.54 3.85 16 14 C -0.11 -3.53 3.68 -9.54 -0.04 -3.57 16 15 H 0.10 3.11 7.88 -2.39 -0.02 3.09 16 16 C 0.15 6.92 5.73 86.51 0.50 7.41 16 17 N -0.62 -29.92 3.43 -690.75 -2.37 -32.29 16 18 C -0.23 -12.34 10.33 84.03 0.87 -11.47 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.06 -3.09 5.49 84.86 0.47 -2.63 16 21 N -0.94 -52.49 10.08 21.65 0.22 -52.27 16 22 Si 0.97 44.14 29.55 68.60 2.03 46.16 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.14 5.45 6.51 86.16 0.56 6.01 16 27 C -0.07 -2.26 1.08 -51.02 -0.06 -2.32 16 28 C -0.12 -2.77 8.43 71.98 0.61 -2.16 16 29 C 0.12 3.36 5.97 86.51 0.52 3.88 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.63 7.70 -2.39 -0.02 2.61 16 34 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.04 1.56 7.12 -2.39 -0.02 1.54 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.96 6.90 -2.39 -0.02 1.94 16 42 H 0.09 4.67 5.45 -2.39 -0.01 4.66 16 43 H -0.01 -0.59 6.39 -2.39 -0.02 -0.61 16 44 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 45 H 0.01 0.22 7.38 -2.39 -0.02 0.20 16 46 H 0.05 1.90 7.82 -2.39 -0.02 1.88 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.07 2.09 7.26 -2.39 -0.02 2.07 16 51 H 0.10 2.16 7.87 -2.39 -0.02 2.14 16 Total: -1.00 -66.93 405.39 5.36 -61.58 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.92 Total: 19.16 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.03 Total: 8.45 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.40 Total: -116.49 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.78 Total: -18.86 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.93 5.36 -61.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091755247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.390 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds