Wall clock time and date at job start Wed Apr 1 2020 04:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30174 * 126.79914 * 2 1 4 4 O 1.20924 * 111.59832 * 180.25196 * 3 2 1 5 5 C 1.34038 * 111.57124 * 359.74326 * 4 3 2 6 6 C 1.50697 * 126.77781 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44573 * 0.02562 * 5 4 3 8 8 C 1.50694 * 128.00879 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47022 * 90.00054 * 8 7 5 10 10 C 1.50701 * 109.47289 * 180.02562 * 9 8 7 11 11 O 1.21288 * 120.00127 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00575 * 180.02562 * 10 9 8 13 13 C 1.47197 * 126.69567 * 0.02945 * 12 10 9 14 14 C 1.53753 * 106.42426 * 211.33187 * 13 12 10 15 15 H 1.08998 * 112.28266 * 104.35848 * 14 13 12 16 16 C 1.54454 * 109.01102 * 229.45550 * 14 13 12 17 17 N 1.48336 * 104.32099 * 137.35720 * 16 14 13 18 18 C 1.36938 * 128.19243 * 138.17346 * 17 16 14 19 19 H 1.07993 * 120.00109 * 338.75239 * 18 17 16 20 20 C 1.38816 * 119.99544 * 158.75650 * 18 17 16 21 21 N 1.31617 * 120.00097 * 336.53034 * 20 18 17 22 22 Si 1.86804 * 119.99704 * 156.25487 * 20 18 17 23 23 H 1.48497 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47192 * 119.99993 * 22 20 18 25 25 H 1.48499 * 109.46978 * 240.00070 * 22 20 18 26 26 C 1.48328 * 103.60419 * 318.43366 * 17 16 14 27 27 C 1.54059 * 104.51992 * 41.53262 * 26 17 16 28 28 C 1.53006 * 112.57891 * 97.43477 * 27 26 17 29 29 C 1.47193 * 126.70666 * 179.97438 * 12 10 9 30 30 H 1.08990 * 109.47320 * 270.16533 * 1 2 3 31 31 H 1.08998 * 109.46707 * 30.16772 * 1 2 3 32 32 H 1.08999 * 109.46887 * 150.16267 * 1 2 3 33 33 H 1.09004 * 109.47145 * 270.00039 * 6 5 4 34 34 H 1.09004 * 109.47321 * 30.00381 * 6 5 4 35 35 H 1.08999 * 109.47212 * 150.00086 * 6 5 4 36 36 H 1.08996 * 109.47366 * 330.00280 * 8 7 5 37 37 H 1.09007 * 109.47423 * 210.00101 * 8 7 5 38 38 H 1.09002 * 109.47337 * 60.00399 * 9 8 7 39 39 H 1.08994 * 109.47169 * 299.99994 * 9 8 7 40 40 H 1.08998 * 110.07110 * 92.09375 * 13 12 10 41 41 H 1.09002 * 110.06722 * 330.56656 * 13 12 10 42 42 H 1.09003 * 110.45832 * 18.64896 * 16 14 13 43 43 H 1.08991 * 110.57199 * 256.12334 * 16 14 13 44 44 H 0.96995 * 119.99872 * 353.97894 * 21 20 18 45 45 H 1.09001 * 110.46473 * 160.28120 * 26 17 16 46 46 H 1.08998 * 110.46007 * 282.85529 * 26 17 16 47 47 H 1.08993 * 109.46988 * 302.11653 * 28 27 26 48 48 H 1.09002 * 109.46619 * 62.11626 * 28 27 26 49 49 H 1.08998 * 109.46763 * 182.11402 * 28 27 26 50 50 H 1.09004 * 110.06037 * 267.91039 * 29 12 10 51 51 H 1.08992 * 110.06591 * 29.36651 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1321 0.0028 8 6 1.9591 -2.5863 0.0063 9 6 1.8318 -3.0767 1.4500 10 6 1.4375 -4.5312 1.4536 11 8 1.2739 -5.1178 0.4047 12 7 1.2657 -5.1801 2.6223 13 6 1.4226 -4.6161 3.9729 14 6 1.9088 -5.7659 4.8704 15 1 2.9708 -5.6878 5.1032 16 6 1.0324 -5.8173 6.1411 17 7 0.7709 -7.2627 6.3482 18 6 0.7784 -7.9646 7.5241 19 1 1.3107 -7.5777 8.3804 20 6 0.1020 -9.1733 7.6151 21 7 -0.8938 -9.4337 6.7947 22 14 0.6100 -10.4336 8.8970 23 1 1.7517 -9.9049 9.6857 24 1 -0.5338 -10.7056 9.8042 25 1 1.0154 -11.6919 8.2206 26 6 0.5057 -7.7689 4.9795 27 6 1.5541 -7.0646 4.0973 28 6 2.7812 -7.9391 3.8316 29 6 0.8833 -6.5906 2.7976 30 1 -0.3633 0.0030 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5113 33 1 5.2112 -1.5551 -1.0364 34 1 5.6682 -0.7851 0.5020 35 1 4.7673 -2.3202 0.5083 36 1 2.7205 -3.1709 -0.5101 37 1 1.0027 -2.7044 -0.5032 38 1 1.0704 -2.4923 1.9665 39 1 2.7881 -2.9587 1.9594 40 1 0.4660 -4.2386 4.3341 41 1 2.1608 -3.8142 3.9598 42 1 0.0976 -5.2800 5.9813 43 1 1.5691 -5.4012 6.9936 44 1 -1.2120 -8.7491 6.1857 45 1 0.6404 -8.8498 4.9401 46 1 -0.5010 -7.4977 4.6613 47 1 3.2354 -8.2256 4.7800 48 1 2.4785 -8.8344 3.2885 49 1 3.5036 -7.3802 3.2368 50 1 -0.2000 -6.6766 2.8828 51 1 1.2398 -7.1822 1.9545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092264242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:45 Heat of formation + Delta-G solvation = 39.004382 kcal Electronic energy + Delta-G solvation = -31091.720850 eV Core-core repulsion = 26994.565427 eV Total energy + Delta-G solvation = -4097.155423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.19805 -40.46142 -38.69504 -36.15085 -35.23467 -34.09212 -32.85408 -32.03265 -31.41853 -29.53824 -28.98246 -28.23746 -26.91282 -26.02290 -25.23046 -24.51661 -22.44291 -21.54314 -20.65664 -20.38137 -19.24563 -18.56173 -17.90996 -17.50070 -17.27675 -16.72841 -16.13254 -15.55140 -15.01092 -14.70566 -14.48259 -14.22264 -13.89819 -13.79378 -13.75250 -13.59977 -13.50302 -13.27889 -13.14554 -12.93159 -12.81160 -12.76577 -12.58525 -12.43678 -12.25196 -11.89569 -11.83360 -11.59422 -11.22703 -11.11891 -11.06026 -10.74686 -10.52054 -10.30656 -10.23969 -10.14859 -10.13766 -10.03368 -9.82942 -9.48639 -9.35957 -8.63908 -8.53125 -7.05666 -6.17941 -3.25694 1.15640 1.88755 2.59737 2.79844 3.03103 3.46559 3.49911 3.62299 3.88407 4.13756 4.33100 4.48156 4.49745 4.69101 4.72050 4.74977 4.86143 4.91977 5.00806 5.04548 5.07445 5.17474 5.19871 5.23729 5.29906 5.35670 5.37115 5.44252 5.45919 5.48938 5.58774 5.60786 5.70132 5.74735 5.78013 5.84936 5.93888 5.95860 6.07259 6.10210 6.15881 6.32851 6.47964 6.49450 6.56929 6.74900 6.83249 6.96284 7.59227 7.66993 8.00513 8.13690 8.37986 8.90389 9.71498 10.34838 11.17588 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002104 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.617891 B =13301.874197 C =13355.408886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.029 4.029 6 C -0.076 4.076 7 C -0.199 4.199 8 C -0.024 4.024 9 C -0.131 4.131 10 C 0.529 3.471 11 O -0.548 6.548 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.108 4.108 15 H 0.086 0.914 16 C 0.131 3.869 17 N -0.596 5.596 18 C -0.328 4.328 19 H 0.065 0.935 20 C -0.026 4.026 21 N -0.919 5.919 22 Si 1.073 2.927 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.289 1.289 26 C 0.148 3.852 27 C -0.087 4.087 28 C -0.119 4.119 29 C 0.116 3.884 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.051 0.949 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.045 0.955 50 H 0.070 0.930 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 16.094 -13.139 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.093 4.093 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.062 4.062 9 C -0.171 4.171 10 C 0.318 3.682 11 O -0.426 6.426 12 N -0.346 5.346 13 C -0.018 4.018 14 C -0.128 4.128 15 H 0.105 0.895 16 C 0.004 3.996 17 N -0.321 5.321 18 C -0.456 4.456 19 H 0.083 0.917 20 C -0.227 4.227 21 N -0.560 5.560 22 Si 0.903 3.097 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.216 1.216 26 C 0.022 3.978 27 C -0.090 4.090 28 C -0.176 4.176 29 C -0.007 4.007 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.299 15.538 -13.049 21.922 hybrid contribution 0.109 0.956 -0.389 1.038 sum 8.407 16.495 -13.438 22.876 Atomic orbital electron populations 1.20197 0.85936 1.03860 1.03564 1.23485 0.98969 0.88479 1.02538 1.73850 0.89294 1.23962 1.20374 1.84797 1.21648 1.22554 1.67905 1.24296 0.98281 0.83781 1.02896 1.20372 0.90014 0.98682 1.04242 1.20976 0.91598 0.97519 1.10156 1.19598 1.03668 0.87342 0.95622 1.21605 1.03811 0.92859 0.98778 1.20214 0.77101 0.88689 0.82238 1.90703 1.52213 1.69023 1.30649 1.48662 1.67811 1.12472 1.05656 1.22301 1.01076 0.96761 0.81618 1.23071 1.00570 0.92898 0.96307 0.89530 1.21855 0.95341 0.88412 0.93985 1.45140 1.83088 1.01852 1.01982 1.19772 1.30390 1.05688 0.89711 0.91723 1.25852 0.94301 0.99551 1.03033 1.70711 1.22343 1.38214 1.24688 0.83410 0.75312 0.75960 0.75055 1.21808 1.22054 1.21595 1.21753 0.93128 0.98417 0.84550 1.22316 0.97365 0.95729 0.93553 1.21570 0.95977 0.98469 1.01616 1.22218 0.99379 0.81084 0.98008 0.90024 0.90543 0.89840 0.89296 0.89714 0.88940 0.89666 0.89603 0.88838 0.88928 0.90976 0.91061 0.95696 0.93082 0.92042 0.91351 0.95532 0.91687 0.92749 0.93633 0.91232 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.01 0.37 -0.22 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.34 12.07 33.42 0.40 -3.94 16 4 O 0.10 1.02 11.20 17.18 0.19 1.21 16 5 C -0.03 -0.25 7.49 -35.30 -0.26 -0.51 16 6 C -0.08 -0.38 10.25 36.00 0.37 -0.01 16 7 C -0.20 -1.84 5.57 -104.43 -0.58 -2.42 16 8 C -0.02 -0.22 4.76 -27.89 -0.13 -0.35 16 9 C -0.13 -1.21 4.66 -27.88 -0.13 -1.34 16 10 C 0.53 6.96 7.88 -10.98 -0.09 6.87 16 11 O -0.55 -9.00 16.21 5.55 0.09 -8.91 16 12 N -0.61 -8.37 3.32 -171.65 -0.57 -8.94 16 13 C 0.11 1.31 6.38 -3.27 -0.02 1.28 16 14 C -0.11 -1.65 3.73 -88.28 -0.33 -1.97 16 15 H 0.09 1.26 7.95 -51.93 -0.41 0.85 16 16 C 0.13 2.46 6.76 -2.27 -0.02 2.45 16 17 N -0.60 -14.18 3.22 -168.72 -0.54 -14.72 16 18 C -0.33 -8.84 10.22 -15.06 -0.15 -9.00 16 19 H 0.06 1.74 7.93 -52.49 -0.42 1.33 16 20 C -0.03 -0.71 5.14 -17.43 -0.09 -0.80 16 21 N -0.92 -27.03 12.77 55.49 0.71 -26.32 16 22 Si 1.07 24.74 29.98 -169.99 -5.10 19.64 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.19 4.32 -2.48 -0.01 3.18 16 27 C -0.09 -1.46 1.07 -152.37 -0.16 -1.62 16 28 C -0.12 -1.88 8.60 37.16 0.32 -1.56 16 29 C 0.12 1.80 6.21 -3.27 -0.02 1.78 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.09 0.82 7.61 -51.93 -0.40 0.43 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 40 H 0.07 0.89 7.10 -51.93 -0.37 0.52 16 41 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 42 H 0.03 0.47 7.17 -51.93 -0.37 0.10 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.27 7.90 6.44 -40.82 -0.26 7.64 16 45 H 0.07 1.66 7.15 -51.93 -0.37 1.29 16 46 H 0.03 0.60 6.80 -51.93 -0.35 0.25 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 51 H 0.08 1.21 7.61 -51.93 -0.40 0.82 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -33.01 405.91 -8.57 -41.58 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.34 Total: -1.11 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.54 Total: -4.61 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.00 Total: -53.92 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.28 Total: -7.70 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.10 Total: 19.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.01 -8.57 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092264242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.585 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds