Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30174 * 126.79914 * 2 1 4 4 O 1.20924 * 111.59832 * 180.25196 * 3 2 1 5 5 C 1.34038 * 111.57124 * 359.74326 * 4 3 2 6 6 C 1.50697 * 126.77781 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44573 * 0.02562 * 5 4 3 8 8 C 1.50694 * 128.00879 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47022 * 90.00054 * 8 7 5 10 10 C 1.50701 * 109.47289 * 180.02562 * 9 8 7 11 11 O 1.21288 * 120.00127 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00575 * 180.02562 * 10 9 8 13 13 C 1.47197 * 126.69567 * 0.02945 * 12 10 9 14 14 C 1.53753 * 106.42426 * 211.33187 * 13 12 10 15 15 H 1.08998 * 112.28266 * 104.35848 * 14 13 12 16 16 C 1.54454 * 109.01102 * 229.45550 * 14 13 12 17 17 N 1.48336 * 104.32099 * 137.35720 * 16 14 13 18 18 C 1.36938 * 128.19243 * 138.17346 * 17 16 14 19 19 H 1.07993 * 120.00109 * 338.75239 * 18 17 16 20 20 C 1.38816 * 119.99544 * 158.75650 * 18 17 16 21 21 N 1.31617 * 120.00097 * 336.53034 * 20 18 17 22 22 Si 1.86804 * 119.99704 * 156.25487 * 20 18 17 23 23 H 1.48497 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47192 * 119.99993 * 22 20 18 25 25 H 1.48499 * 109.46978 * 240.00070 * 22 20 18 26 26 C 1.48328 * 103.60419 * 318.43366 * 17 16 14 27 27 C 1.54059 * 104.51992 * 41.53262 * 26 17 16 28 28 C 1.53006 * 112.57891 * 97.43477 * 27 26 17 29 29 C 1.47193 * 126.70666 * 179.97438 * 12 10 9 30 30 H 1.08990 * 109.47320 * 270.16533 * 1 2 3 31 31 H 1.08998 * 109.46707 * 30.16772 * 1 2 3 32 32 H 1.08999 * 109.46887 * 150.16267 * 1 2 3 33 33 H 1.09004 * 109.47145 * 270.00039 * 6 5 4 34 34 H 1.09004 * 109.47321 * 30.00381 * 6 5 4 35 35 H 1.08999 * 109.47212 * 150.00086 * 6 5 4 36 36 H 1.08996 * 109.47366 * 330.00280 * 8 7 5 37 37 H 1.09007 * 109.47423 * 210.00101 * 8 7 5 38 38 H 1.09002 * 109.47337 * 60.00399 * 9 8 7 39 39 H 1.08994 * 109.47169 * 299.99994 * 9 8 7 40 40 H 1.08998 * 110.07110 * 92.09375 * 13 12 10 41 41 H 1.09002 * 110.06722 * 330.56656 * 13 12 10 42 42 H 1.09003 * 110.45832 * 18.64896 * 16 14 13 43 43 H 1.08991 * 110.57199 * 256.12334 * 16 14 13 44 44 H 0.96995 * 119.99872 * 353.97894 * 21 20 18 45 45 H 1.09001 * 110.46473 * 160.28120 * 26 17 16 46 46 H 1.08998 * 110.46007 * 282.85529 * 26 17 16 47 47 H 1.08993 * 109.46988 * 302.11653 * 28 27 26 48 48 H 1.09002 * 109.46619 * 62.11626 * 28 27 26 49 49 H 1.08998 * 109.46763 * 182.11402 * 28 27 26 50 50 H 1.09004 * 110.06037 * 267.91039 * 29 12 10 51 51 H 1.08992 * 110.06591 * 29.36651 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0034 6 6 4.9022 -1.3695 -0.0077 7 6 2.3540 -1.1321 0.0028 8 6 1.9591 -2.5863 0.0063 9 6 1.8318 -3.0767 1.4500 10 6 1.4375 -4.5312 1.4536 11 8 1.2739 -5.1178 0.4047 12 7 1.2657 -5.1801 2.6223 13 6 1.4226 -4.6161 3.9729 14 6 1.9088 -5.7659 4.8704 15 1 2.9708 -5.6878 5.1032 16 6 1.0324 -5.8173 6.1411 17 7 0.7709 -7.2627 6.3482 18 6 0.7784 -7.9646 7.5241 19 1 1.3107 -7.5777 8.3804 20 6 0.1020 -9.1733 7.6151 21 7 -0.8938 -9.4337 6.7947 22 14 0.6100 -10.4336 8.8970 23 1 1.7517 -9.9049 9.6857 24 1 -0.5338 -10.7056 9.8042 25 1 1.0154 -11.6919 8.2206 26 6 0.5057 -7.7689 4.9795 27 6 1.5541 -7.0646 4.0973 28 6 2.7812 -7.9391 3.8316 29 6 0.8833 -6.5906 2.7976 30 1 -0.3633 0.0030 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5113 33 1 5.2112 -1.5551 -1.0364 34 1 5.6682 -0.7851 0.5020 35 1 4.7673 -2.3202 0.5083 36 1 2.7205 -3.1709 -0.5101 37 1 1.0027 -2.7044 -0.5032 38 1 1.0704 -2.4923 1.9665 39 1 2.7881 -2.9587 1.9594 40 1 0.4660 -4.2386 4.3341 41 1 2.1608 -3.8142 3.9598 42 1 0.0976 -5.2800 5.9813 43 1 1.5691 -5.4012 6.9936 44 1 -1.2120 -8.7491 6.1857 45 1 0.6404 -8.8498 4.9401 46 1 -0.5010 -7.4977 4.6613 47 1 3.2354 -8.2256 4.7800 48 1 2.4785 -8.8344 3.2885 49 1 3.5036 -7.3802 3.2368 50 1 -0.2000 -6.6766 2.8828 51 1 1.2398 -7.1822 1.9545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092264242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = 20.223010 kcal Electronic energy + Delta-G solvation = -31092.535271 eV Core-core repulsion = 26994.565427 eV Total energy + Delta-G solvation = -4097.969844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.91516 -41.68582 -39.92190 -36.96956 -36.67418 -34.75156 -34.43978 -33.17799 -32.53390 -31.07923 -29.62695 -28.90125 -28.12026 -27.54731 -26.66415 -25.56933 -23.86412 -22.31734 -22.24198 -21.03488 -20.41184 -19.84638 -19.28365 -18.65990 -18.25526 -17.63140 -17.14135 -16.64088 -16.28791 -16.00592 -15.79507 -15.46288 -15.27951 -15.14455 -14.76641 -14.45951 -14.32767 -14.19179 -13.95253 -13.81348 -13.72070 -13.66172 -13.51937 -13.33527 -13.23974 -13.11642 -12.88902 -12.76471 -12.64697 -12.53243 -12.28386 -12.20761 -11.87624 -11.74330 -11.68876 -11.66109 -11.51389 -11.42038 -10.95734 -10.77248 -10.57804 -10.05562 -9.75128 -9.02858 -8.32720 -5.36072 0.49715 1.18320 1.58375 1.59188 1.66615 1.81611 1.95216 2.23261 2.63870 3.19259 3.21810 3.31535 3.38340 3.53823 3.63471 3.80542 3.84065 3.88012 4.01579 4.10169 4.19691 4.23267 4.27405 4.31136 4.40912 4.42660 4.54153 4.63035 4.65258 4.68238 4.70287 4.71668 4.73466 4.81993 4.84594 4.86854 4.92203 4.93936 4.99911 5.04778 5.06347 5.08018 5.17292 5.18487 5.25652 5.33361 5.36735 5.42395 5.68402 6.29949 6.55082 6.84989 7.10386 7.31901 7.67243 8.36818 9.02938 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002104 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.617891 B =13301.874197 C =13355.408886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 N -0.401 5.401 4 O 0.082 5.918 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.209 4.209 8 C -0.016 4.016 9 C -0.120 4.120 10 C 0.530 3.470 11 O -0.583 6.583 12 N -0.613 5.613 13 C 0.112 3.888 14 C -0.095 4.095 15 H 0.105 0.895 16 C 0.127 3.873 17 N -0.624 5.624 18 C -0.328 4.328 19 H 0.063 0.937 20 C -0.082 4.082 21 N -0.952 5.952 22 Si 1.120 2.880 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.156 3.844 27 C -0.079 4.079 28 C -0.113 4.113 29 C 0.122 3.878 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.029 0.971 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.055 0.945 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 17.723 -13.251 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 N -0.110 5.110 4 O 0.020 5.980 5 C -0.084 4.084 6 C -0.134 4.134 7 C -0.213 4.213 8 C -0.054 4.054 9 C -0.160 4.160 10 C 0.321 3.679 11 O -0.464 6.464 12 N -0.345 5.345 13 C -0.010 4.010 14 C -0.116 4.116 15 H 0.123 0.877 16 C 0.002 3.998 17 N -0.349 5.349 18 C -0.456 4.456 19 H 0.081 0.919 20 C -0.277 4.277 21 N -0.595 5.595 22 Si 0.945 3.055 23 H -0.194 1.194 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.030 3.970 27 C -0.081 4.081 28 C -0.170 4.170 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.533 17.222 -13.163 24.100 hybrid contribution -0.586 0.497 -0.387 0.861 sum 9.947 17.719 -13.550 24.424 Atomic orbital electron populations 1.20297 0.84685 1.04363 1.04333 1.23931 1.00014 0.88590 1.01674 1.73849 0.89887 1.25060 1.22231 1.84762 1.21353 1.23664 1.68249 1.24931 0.99498 0.83111 1.00869 1.20588 0.88621 0.98784 1.05434 1.20981 0.91753 0.97266 1.11283 1.19487 1.03264 0.87124 0.95530 1.21618 1.05401 0.89626 0.99320 1.20906 0.75891 0.89919 0.81205 1.90697 1.53652 1.70139 1.31884 1.48678 1.67842 1.11421 1.06564 1.22320 1.02451 0.96273 0.79987 1.22977 1.00820 0.93084 0.94687 0.87719 1.22059 0.96147 0.85513 0.96109 1.45407 1.83209 1.04359 1.01875 1.20030 1.28913 1.05901 0.90781 0.91944 1.27175 0.94142 1.01862 1.04557 1.70831 1.24386 1.37977 1.26283 0.82780 0.75636 0.73865 0.73203 1.19424 1.21945 1.21656 1.21603 0.93899 0.96569 0.84959 1.22148 0.96271 0.96260 0.93442 1.21510 0.95812 0.98592 1.01093 1.21937 0.98378 0.82829 0.97012 0.89042 0.90414 0.88988 0.88036 0.88296 0.87792 0.89590 0.90519 0.87386 0.86382 0.90716 0.86816 0.95478 0.92556 0.93636 0.95188 0.97344 0.93341 0.93080 0.90958 0.92717 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.39 71.24 0.74 -0.35 16 2 C 0.02 0.31 7.33 43.58 0.32 0.63 16 3 N -0.40 -9.04 12.07 -49.56 -0.60 -9.64 16 4 O 0.08 1.62 11.20 71.65 0.80 2.42 16 5 C -0.02 -0.30 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.52 10.25 71.24 0.73 0.21 16 7 C -0.21 -3.37 5.57 -19.74 -0.11 -3.48 16 8 C -0.02 -0.24 4.76 29.85 0.14 -0.10 16 9 C -0.12 -1.74 4.66 29.85 0.14 -1.60 16 10 C 0.53 12.37 7.88 87.66 0.69 13.06 16 11 O -0.58 -18.14 16.21 -3.06 -0.05 -18.19 16 12 N -0.61 -14.99 3.32 -815.35 -2.71 -17.69 16 13 C 0.11 2.33 6.38 86.50 0.55 2.88 16 14 C -0.10 -2.65 3.73 -9.28 -0.03 -2.69 16 15 H 0.10 2.62 7.95 -2.39 -0.02 2.60 16 16 C 0.13 4.63 6.76 86.52 0.59 5.21 16 17 N -0.62 -30.03 3.22 -687.71 -2.21 -32.25 16 18 C -0.33 -17.90 10.22 84.03 0.86 -17.04 16 19 H 0.06 3.37 7.93 -2.91 -0.02 3.34 16 20 C -0.08 -4.63 5.14 84.86 0.44 -4.19 16 21 N -0.95 -58.11 12.77 21.65 0.28 -57.83 16 22 Si 1.12 50.49 29.98 68.60 2.06 52.55 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 26 C 0.16 6.96 4.32 86.39 0.37 7.33 16 27 C -0.08 -2.58 1.07 -50.80 -0.05 -2.63 16 28 C -0.11 -3.44 8.60 71.98 0.62 -2.82 16 29 C 0.12 3.70 6.21 86.50 0.54 4.24 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.08 7.65 -2.39 -0.02 1.06 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.10 0.50 8.05 -2.39 -0.02 0.48 16 36 H 0.09 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.08 1.33 7.61 -2.38 -0.02 1.31 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 1.18 7.86 -2.39 -0.02 1.16 16 40 H 0.07 1.58 7.10 -2.39 -0.02 1.56 16 41 H 0.11 1.50 7.31 -2.39 -0.02 1.48 16 42 H 0.03 0.99 7.17 -2.39 -0.02 0.97 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.25 15.72 6.44 -92.71 -0.60 15.12 16 45 H 0.03 1.53 7.15 -2.39 -0.02 1.52 16 46 H 0.01 0.42 6.80 -2.39 -0.02 0.40 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.05 1.82 7.11 -2.38 -0.02 1.80 16 51 H 0.07 2.27 7.61 -2.39 -0.02 2.25 16 Total: -1.00 -74.87 405.91 5.37 -69.49 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.09 Total: 12.60 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.71 Total: -1.45 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -5.24 Total: -117.42 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.75 Total: -15.77 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.06 Total: 52.55 kcal Total: -74.87 5.37 -69.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092264242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.717 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds