Wall clock time and date at job start Wed Apr 1 2020 05:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 120.41897 * 2 1 4 4 N 1.31860 * 120.76415 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72188 * 0.02562 * 4 3 2 6 6 C 1.38182 * 120.76558 * 359.97438 * 5 4 3 7 7 C 1.38624 * 120.41590 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.79214 * 359.94982 * 7 2 1 9 9 C 1.50698 * 109.46819 * 85.02663 * 8 7 2 10 10 O 1.21282 * 120.00463 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62851 * 359.71452 * 11 9 8 13 13 C 1.53627 * 108.54146 * 126.37087 * 12 11 9 14 14 C 1.53033 * 109.24258 * 54.85757 * 13 12 11 15 15 N 1.46502 * 109.45966 * 178.48950 * 14 13 12 16 16 C 1.36936 * 119.99811 * 60.07469 * 15 14 13 17 17 H 1.07997 * 119.99815 * 326.29206 * 16 15 14 18 18 C 1.38812 * 119.99930 * 146.29724 * 16 15 14 19 19 N 1.31615 * 120.00345 * 337.21756 * 18 16 15 20 20 Si 1.86803 * 119.99819 * 157.21402 * 18 16 15 21 21 H 1.48499 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47046 * 119.99737 * 20 18 16 23 23 H 1.48493 * 109.47223 * 240.00066 * 20 18 16 24 24 C 1.46502 * 120.00033 * 240.06740 * 15 14 13 25 25 C 1.53000 * 109.46800 * 84.41394 * 24 15 14 26 26 O 1.42899 * 109.46855 * 65.00069 * 25 24 15 27 27 C 1.53046 * 109.53949 * 298.51181 * 14 13 12 28 28 C 1.46922 * 120.63293 * 180.02562 * 11 9 8 29 29 H 1.09003 * 109.47046 * 269.97935 * 1 2 3 30 30 H 1.09001 * 109.46882 * 29.97371 * 1 2 3 31 31 H 1.08999 * 109.47232 * 149.97461 * 1 2 3 32 32 H 1.08008 * 119.61932 * 0.04523 * 3 2 1 33 33 H 1.07996 * 119.61115 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.41787 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46937 * 205.02212 * 8 7 2 36 36 H 1.08993 * 109.47194 * 325.02552 * 8 7 2 37 37 H 1.09000 * 109.58990 * 246.20693 * 12 11 9 38 38 H 1.09003 * 109.58581 * 6.63131 * 12 11 9 39 39 H 1.09003 * 109.63185 * 294.86540 * 13 12 11 40 40 H 1.09000 * 109.45614 * 174.74759 * 13 12 11 41 41 H 1.09000 * 109.44995 * 58.52187 * 14 13 12 42 42 H 0.97000 * 120.00324 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46935 * 204.41798 * 24 15 14 44 44 H 1.08999 * 109.47134 * 324.41809 * 24 15 14 45 45 H 1.09003 * 109.46824 * 184.99543 * 25 24 15 46 46 H 1.08993 * 109.47379 * 304.99757 * 25 24 15 47 47 H 0.96700 * 114.00268 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.49664 * 301.41203 * 27 14 13 49 49 H 1.08998 * 109.52528 * 181.32931 * 27 14 13 50 50 H 1.08996 * 109.58969 * 353.36635 * 28 11 9 51 51 H 1.08994 * 109.59283 * 113.65677 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0015 6 6 3.5948 -1.1471 -0.0016 7 6 2.2089 -1.1955 -0.0005 8 6 1.4830 -2.5161 0.0000 9 6 1.1321 -2.8970 -1.4152 10 8 1.4406 -2.1676 -2.3338 11 7 0.4746 -4.0477 -1.6601 12 6 0.0987 -4.9441 -0.5584 13 6 -1.4089 -5.2252 -0.6499 14 6 -1.7368 -5.7693 -2.0422 15 7 -3.1678 -6.0730 -2.1229 16 6 -4.0904 -5.0794 -1.9314 17 1 -3.8859 -4.2795 -1.2351 18 6 -5.2885 -5.1003 -2.6322 19 7 -5.3770 -5.7650 -3.7647 20 14 -6.7752 -4.1851 -1.9677 21 1 -6.4170 -3.5217 -0.6883 22 1 -7.2064 -3.1604 -2.9522 23 1 -7.8839 -5.1451 -1.7347 24 6 -3.6116 -7.4396 -2.4086 25 6 -3.6505 -8.2454 -1.1086 26 8 -4.6443 -7.6991 -0.2392 27 6 -1.3774 -4.7220 -3.0987 28 6 0.1260 -4.4328 -3.0345 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6675 2.1277 0.0007 33 1 5.3046 0.1286 -0.0023 34 1 4.1737 -2.0588 -0.0020 35 1 2.1245 -3.2831 0.4342 36 1 0.5706 -2.4290 0.5897 37 1 0.6532 -5.8788 -0.6423 38 1 0.3255 -4.4666 0.3949 39 1 -1.9644 -4.3030 -0.4796 40 1 -1.6873 -5.9620 0.1036 41 1 -1.1621 -6.6779 -2.2214 42 1 -6.2143 -5.7799 -4.2542 43 1 -4.6079 -7.4132 -2.8498 44 1 -2.9177 -7.9086 -3.1062 45 1 -3.8945 -9.2840 -1.3321 46 1 -2.6762 -8.1976 -0.6222 47 1 -4.7247 -8.1619 0.6061 48 1 -1.9332 -3.8046 -2.9054 49 1 -1.6330 -5.1005 -4.0885 50 1 0.3708 -3.6179 -3.7156 51 1 0.6845 -5.3252 -3.3167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098367506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:58 Heat of formation + Delta-G solvation = -27.889071 kcal Electronic energy + Delta-G solvation = -31670.518056 eV Core-core repulsion = 27570.461915 eV Total energy + Delta-G solvation = -4100.056141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.74414 -39.67374 -37.62639 -36.19903 -34.65957 -34.48227 -32.59498 -32.06583 -30.92920 -30.33142 -28.84856 -27.68952 -27.13731 -24.87805 -23.41664 -23.16215 -22.57253 -21.77854 -20.72732 -19.90679 -18.79775 -17.28814 -16.91685 -16.65596 -16.62230 -16.17635 -15.50926 -15.20174 -15.05028 -14.89519 -14.44748 -14.32840 -13.76579 -13.67754 -13.59658 -13.42254 -13.23350 -13.10767 -12.82173 -12.75845 -12.64609 -12.42702 -12.17602 -12.07375 -11.98701 -11.51345 -11.44765 -11.20863 -10.96528 -10.82186 -10.67519 -10.50619 -10.16159 -9.94350 -9.88890 -9.87447 -9.55837 -9.50265 -9.41367 -9.13109 -8.96898 -8.43868 -8.38688 -6.58619 -5.73668 -3.23552 1.04374 1.12022 2.68587 3.12142 3.42688 3.50871 3.52940 3.71265 4.31422 4.39981 4.53474 4.55844 4.62404 4.82290 4.87694 5.04619 5.10619 5.16286 5.21741 5.23546 5.32293 5.41000 5.43736 5.49770 5.51168 5.54807 5.62379 5.70277 5.80006 5.87809 5.92203 5.98842 6.01165 6.03496 6.09765 6.21491 6.23690 6.33614 6.42799 6.56630 6.61594 6.66438 6.75634 6.79317 7.06936 7.16887 7.53737 7.67808 7.86954 7.87935 8.26049 8.41440 8.59657 9.22694 9.88476 10.40802 11.29481 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002800 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.907571 B = 9996.800390 C =10792.199316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C 0.097 3.903 4 N -0.486 5.486 5 C 0.088 3.912 6 C -0.158 4.158 7 C -0.020 4.020 8 C -0.107 4.107 9 C 0.517 3.483 10 O -0.540 6.540 11 N -0.603 5.603 12 C 0.106 3.894 13 C -0.140 4.140 14 C 0.177 3.823 15 N -0.572 5.572 16 C -0.233 4.233 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.140 3.860 25 C 0.060 3.940 26 O -0.544 6.544 27 C -0.133 4.133 28 C 0.112 3.888 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.251 0.749 43 H 0.108 0.892 44 H 0.035 0.965 45 H 0.019 0.981 46 H 0.021 0.979 47 H 0.349 0.651 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.084 0.916 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.669 1.485 9.812 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.060 4.060 4 N -0.194 5.194 5 C -0.068 4.068 6 C -0.177 4.177 7 C -0.029 4.029 8 C -0.146 4.146 9 C 0.304 3.696 10 O -0.417 6.417 11 N -0.337 5.337 12 C -0.017 4.017 13 C -0.180 4.180 14 C 0.069 3.931 15 N -0.290 5.290 16 C -0.362 4.362 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.216 1.216 24 C 0.014 3.986 25 C -0.020 4.020 26 O -0.345 6.345 27 C -0.173 4.173 28 C -0.010 4.010 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.125 0.875 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.039 0.961 47 H 0.192 0.808 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.049 3.071 8.668 17.636 hybrid contribution -1.223 -1.062 0.833 1.821 sum 13.826 2.009 9.501 16.895 Atomic orbital electron populations 1.20778 0.90107 1.03863 1.02428 1.20777 0.97635 0.93543 0.99964 1.22614 0.89880 0.97308 0.96233 1.67629 1.08362 1.31450 1.11955 1.22630 1.00153 0.87639 0.96407 1.21962 0.94314 0.99725 1.01741 1.19598 0.93488 0.93864 0.95938 1.20752 1.02332 0.95282 0.96270 1.20243 0.77973 0.80877 0.90492 1.90713 1.53998 1.50850 1.46152 1.48155 1.56079 1.20766 1.08678 1.21969 0.97451 0.93420 0.88872 1.22448 0.92394 1.02552 1.00614 1.20295 0.86932 0.94443 0.91414 1.43763 0.98946 1.04210 1.82098 1.18793 0.96333 1.04307 1.16776 0.92490 1.24934 0.99768 0.99252 0.94641 1.69974 1.25290 1.45615 1.12887 0.86339 0.83701 0.78818 0.78450 1.20398 1.22257 1.21649 1.21067 1.03305 0.83489 0.90769 1.23088 0.89213 0.95149 0.94569 1.86857 1.59272 1.58901 1.29471 1.22317 0.92099 1.01762 1.01151 1.21761 0.97111 1.00156 0.81993 0.90720 0.90882 0.91083 0.82901 0.82954 0.85045 0.87787 0.87331 0.91632 0.90600 0.91197 0.91387 0.93562 0.93877 0.87459 0.94696 0.96302 0.96100 0.80842 0.91074 0.90990 0.89766 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.30 36.01 0.33 -0.89 16 2 C -0.12 -1.40 5.90 -104.48 -0.62 -2.02 16 3 C 0.10 1.15 10.86 -17.54 -0.19 0.96 16 4 N -0.49 -6.22 10.36 -13.25 -0.14 -6.36 16 5 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 6 C -0.16 -1.70 9.80 -39.44 -0.39 -2.08 16 7 C -0.02 -0.24 4.41 -104.32 -0.46 -0.70 16 8 C -0.11 -1.12 3.53 -29.04 -0.10 -1.22 16 9 C 0.52 7.36 7.02 -10.99 -0.08 7.28 16 10 O -0.54 -9.75 15.45 5.56 0.09 -9.66 16 11 N -0.60 -8.36 2.97 -172.48 -0.51 -8.87 16 12 C 0.11 1.25 6.37 -3.48 -0.02 1.22 16 13 C -0.14 -2.17 5.32 -26.39 -0.14 -2.31 16 14 C 0.18 3.23 2.59 -67.89 -0.18 3.05 16 15 N -0.57 -12.88 2.35 -165.62 -0.39 -13.27 16 16 C -0.23 -5.99 8.06 -15.06 -0.12 -6.11 16 17 H 0.06 1.50 6.87 -52.49 -0.36 1.14 16 18 C 0.01 0.35 4.90 -17.43 -0.09 0.26 16 19 N -0.89 -25.18 11.36 55.49 0.63 -24.55 16 20 Si 0.90 21.97 29.61 -169.99 -5.03 16.94 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.14 3.09 5.57 -4.04 -0.02 3.07 16 25 C 0.06 1.11 7.39 37.16 0.27 1.38 16 26 O -0.54 -10.80 13.40 -35.23 -0.47 -11.27 16 27 C -0.13 -2.45 5.31 -26.58 -0.14 -2.59 16 28 C 0.11 1.72 6.43 -3.69 -0.02 1.70 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.07 0.88 6.35 -51.93 -0.33 0.55 16 32 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.10 0.82 7.86 -51.93 -0.41 0.41 16 36 H 0.11 1.01 6.67 -51.93 -0.35 0.67 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 39 H 0.07 1.24 7.03 -51.93 -0.37 0.88 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.11 2.80 5.35 -51.93 -0.28 2.52 16 44 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.35 4.95 9.12 45.56 0.42 5.36 16 48 H 0.07 1.51 7.71 -51.93 -0.40 1.11 16 49 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 50 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 51 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -33.47 404.14 -9.24 -42.71 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.35 Total: 6.46 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.15 Total: 1.78 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.41 Total: -53.05 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.39 Total: -20.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.47 -9.24 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098367506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.823 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds