Wall clock time and date at job start Wed Apr 1 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 120.41897 * 2 1 4 4 N 1.31860 * 120.76415 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72188 * 0.02562 * 4 3 2 6 6 C 1.38182 * 120.76558 * 359.97438 * 5 4 3 7 7 C 1.38624 * 120.41590 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.79214 * 359.94982 * 7 2 1 9 9 C 1.50698 * 109.46819 * 85.02663 * 8 7 2 10 10 O 1.21282 * 120.00463 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62851 * 359.71452 * 11 9 8 13 13 C 1.53627 * 108.54146 * 126.37087 * 12 11 9 14 14 C 1.53033 * 109.24258 * 54.85757 * 13 12 11 15 15 N 1.46502 * 109.45966 * 178.48950 * 14 13 12 16 16 C 1.36936 * 119.99811 * 60.07469 * 15 14 13 17 17 H 1.07997 * 119.99815 * 326.29206 * 16 15 14 18 18 C 1.38812 * 119.99930 * 146.29724 * 16 15 14 19 19 N 1.31615 * 120.00345 * 337.21756 * 18 16 15 20 20 Si 1.86803 * 119.99819 * 157.21402 * 18 16 15 21 21 H 1.48499 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47046 * 119.99737 * 20 18 16 23 23 H 1.48493 * 109.47223 * 240.00066 * 20 18 16 24 24 C 1.46502 * 120.00033 * 240.06740 * 15 14 13 25 25 C 1.53000 * 109.46800 * 84.41394 * 24 15 14 26 26 O 1.42899 * 109.46855 * 65.00069 * 25 24 15 27 27 C 1.53046 * 109.53949 * 298.51181 * 14 13 12 28 28 C 1.46922 * 120.63293 * 180.02562 * 11 9 8 29 29 H 1.09003 * 109.47046 * 269.97935 * 1 2 3 30 30 H 1.09001 * 109.46882 * 29.97371 * 1 2 3 31 31 H 1.08999 * 109.47232 * 149.97461 * 1 2 3 32 32 H 1.08008 * 119.61932 * 0.04523 * 3 2 1 33 33 H 1.07996 * 119.61115 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.41787 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46937 * 205.02212 * 8 7 2 36 36 H 1.08993 * 109.47194 * 325.02552 * 8 7 2 37 37 H 1.09000 * 109.58990 * 246.20693 * 12 11 9 38 38 H 1.09003 * 109.58581 * 6.63131 * 12 11 9 39 39 H 1.09003 * 109.63185 * 294.86540 * 13 12 11 40 40 H 1.09000 * 109.45614 * 174.74759 * 13 12 11 41 41 H 1.09000 * 109.44995 * 58.52187 * 14 13 12 42 42 H 0.97000 * 120.00324 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46935 * 204.41798 * 24 15 14 44 44 H 1.08999 * 109.47134 * 324.41809 * 24 15 14 45 45 H 1.09003 * 109.46824 * 184.99543 * 25 24 15 46 46 H 1.08993 * 109.47379 * 304.99757 * 25 24 15 47 47 H 0.96700 * 114.00268 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.49664 * 301.41203 * 27 14 13 49 49 H 1.08998 * 109.52528 * 181.32931 * 27 14 13 50 50 H 1.08996 * 109.58969 * 353.36635 * 28 11 9 51 51 H 1.08994 * 109.59283 * 113.65677 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0015 6 6 3.5948 -1.1471 -0.0016 7 6 2.2089 -1.1955 -0.0005 8 6 1.4830 -2.5161 0.0000 9 6 1.1321 -2.8970 -1.4152 10 8 1.4406 -2.1676 -2.3338 11 7 0.4746 -4.0477 -1.6601 12 6 0.0987 -4.9441 -0.5584 13 6 -1.4089 -5.2252 -0.6499 14 6 -1.7368 -5.7693 -2.0422 15 7 -3.1678 -6.0730 -2.1229 16 6 -4.0904 -5.0794 -1.9314 17 1 -3.8859 -4.2795 -1.2351 18 6 -5.2885 -5.1003 -2.6322 19 7 -5.3770 -5.7650 -3.7647 20 14 -6.7752 -4.1851 -1.9677 21 1 -6.4170 -3.5217 -0.6883 22 1 -7.2064 -3.1604 -2.9522 23 1 -7.8839 -5.1451 -1.7347 24 6 -3.6116 -7.4396 -2.4086 25 6 -3.6505 -8.2454 -1.1086 26 8 -4.6443 -7.6991 -0.2392 27 6 -1.3774 -4.7220 -3.0987 28 6 0.1260 -4.4328 -3.0345 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6675 2.1277 0.0007 33 1 5.3046 0.1286 -0.0023 34 1 4.1737 -2.0588 -0.0020 35 1 2.1245 -3.2831 0.4342 36 1 0.5706 -2.4290 0.5897 37 1 0.6532 -5.8788 -0.6423 38 1 0.3255 -4.4666 0.3949 39 1 -1.9644 -4.3030 -0.4796 40 1 -1.6873 -5.9620 0.1036 41 1 -1.1621 -6.6779 -2.2214 42 1 -6.2143 -5.7799 -4.2542 43 1 -4.6079 -7.4132 -2.8498 44 1 -2.9177 -7.9086 -3.1062 45 1 -3.8945 -9.2840 -1.3321 46 1 -2.6762 -8.1976 -0.6222 47 1 -4.7247 -8.1619 0.6061 48 1 -1.9332 -3.8046 -2.9054 49 1 -1.6330 -5.1005 -4.0885 50 1 0.3708 -3.6179 -3.7156 51 1 0.6845 -5.3252 -3.3167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098367506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:57 Heat of formation + Delta-G solvation = -50.708908 kcal Electronic energy + Delta-G solvation = -31671.507598 eV Core-core repulsion = 27570.461915 eV Total energy + Delta-G solvation = -4101.045683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68465 -40.72216 -39.04404 -37.62294 -36.20650 -35.37286 -33.82324 -33.35995 -32.28336 -31.80652 -29.87834 -29.22726 -28.02621 -26.47382 -24.84438 -24.27073 -23.59699 -22.77374 -22.17654 -21.40741 -19.99711 -18.50354 -18.15881 -17.88785 -17.73892 -17.48002 -16.80511 -16.51712 -16.18760 -16.01362 -15.96946 -15.58606 -15.25040 -14.99903 -14.73215 -14.57052 -14.34012 -14.25003 -14.03624 -13.88846 -13.64028 -13.58712 -13.42288 -13.22876 -13.03751 -12.99055 -12.91579 -12.73618 -12.54996 -12.32276 -12.26233 -12.07076 -11.80227 -11.60817 -11.47628 -11.11906 -10.99578 -10.59935 -10.41244 -10.38257 -10.32921 -9.80046 -9.60429 -8.47668 -7.73561 -5.24656 0.22094 0.26735 1.43691 1.48171 1.55013 1.61951 2.06968 2.57506 2.85965 3.37244 3.49328 3.56592 3.61970 3.68460 3.80547 3.86808 4.00652 4.04177 4.07151 4.19577 4.27325 4.38659 4.42217 4.47985 4.48970 4.54880 4.61116 4.64629 4.72234 4.72684 4.76005 4.82764 4.85673 4.90102 4.92522 4.96739 5.05613 5.12918 5.15139 5.17908 5.25550 5.40786 5.49127 5.62742 5.69016 5.77896 5.81978 5.89128 6.46769 6.55128 7.04495 7.17972 7.24676 7.31059 8.01560 8.47107 9.24597 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002800 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.907571 B = 9996.800390 C =10792.199316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.132 4.132 3 C 0.081 3.919 4 N -0.510 5.510 5 C 0.077 3.923 6 C -0.158 4.158 7 C -0.036 4.036 8 C -0.098 4.098 9 C 0.515 3.485 10 O -0.585 6.585 11 N -0.605 5.605 12 C 0.112 3.888 13 C -0.129 4.129 14 C 0.172 3.828 15 N -0.584 5.584 16 C -0.214 4.214 17 H 0.048 0.952 18 C -0.040 4.040 19 N -0.923 5.923 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.301 1.301 23 H -0.297 1.297 24 C 0.133 3.867 25 C 0.071 3.929 26 O -0.576 6.576 27 C -0.122 4.122 28 C 0.124 3.876 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.243 0.757 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.046 0.954 47 H 0.375 0.625 48 H 0.031 0.969 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.093 0.146 12.508 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 C -0.075 4.075 4 N -0.219 5.219 5 C -0.079 4.079 6 C -0.178 4.178 7 C -0.045 4.045 8 C -0.137 4.137 9 C 0.304 3.696 10 O -0.465 6.465 11 N -0.337 5.337 12 C -0.010 4.010 13 C -0.169 4.169 14 C 0.066 3.934 15 N -0.304 5.304 16 C -0.345 4.345 17 H 0.066 0.934 18 C -0.235 4.235 19 N -0.570 5.570 20 Si 0.771 3.229 21 H -0.196 1.196 22 H -0.229 1.229 23 H -0.224 1.224 24 C 0.007 3.993 25 C -0.009 4.009 26 O -0.381 6.381 27 C -0.162 4.162 28 C 0.000 4.000 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.195 0.805 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.221 0.779 48 H 0.050 0.950 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.488 1.712 11.423 20.958 hybrid contribution -1.918 -0.654 -0.013 2.026 sum 15.570 1.058 11.411 19.333 Atomic orbital electron populations 1.20753 0.89713 1.02930 1.03378 1.20974 0.98112 0.93991 1.00275 1.22891 0.90010 0.98114 0.96532 1.67647 1.08826 1.32611 1.12818 1.23138 1.01454 0.87518 0.95803 1.22295 0.94201 1.00678 1.00602 1.19872 0.94206 0.94267 0.96129 1.20798 1.03621 0.95680 0.93639 1.20901 0.77028 0.79989 0.91658 1.90699 1.55840 1.52044 1.47954 1.48234 1.55819 1.21244 1.08418 1.22130 0.94539 0.94749 0.89588 1.22265 0.95157 1.01087 0.98418 1.20541 0.84677 0.95242 0.92986 1.43952 1.00366 1.03942 1.82106 1.18863 0.96705 1.03965 1.14960 0.93413 1.25440 1.01828 1.00978 0.95291 1.70092 1.25053 1.47786 1.14066 0.85620 0.81565 0.77675 0.77996 1.19638 1.22917 1.22422 1.21021 1.01234 0.84028 0.93029 1.22849 0.90198 0.95184 0.92681 1.86775 1.59865 1.60239 1.31266 1.22133 0.94182 0.99880 0.99996 1.21496 0.94717 1.00531 0.83226 0.88779 0.90754 0.93024 0.81629 0.80470 0.82337 0.84019 0.85915 0.88636 0.86973 0.94063 0.90539 0.91433 0.94728 0.91672 0.93820 0.94005 0.93626 0.77907 0.94972 0.93551 0.91630 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.30 71.24 0.66 -1.63 16 2 C -0.13 -3.01 5.90 -19.77 -0.12 -3.13 16 3 C 0.08 1.89 10.86 84.69 0.92 2.81 16 4 N -0.51 -12.61 10.36 -195.84 -2.03 -14.64 16 5 C 0.08 1.56 11.18 84.67 0.95 2.51 16 6 C -0.16 -2.98 9.80 22.36 0.22 -2.76 16 7 C -0.04 -0.77 4.41 -19.67 -0.09 -0.86 16 8 C -0.10 -1.71 3.53 29.10 0.10 -1.61 16 9 C 0.51 13.54 7.02 87.66 0.62 14.15 16 10 O -0.58 -20.81 15.45 -3.03 -0.05 -20.86 16 11 N -0.60 -15.17 2.97 -817.98 -2.43 -17.60 16 12 C 0.11 2.11 6.37 86.51 0.55 2.66 16 13 C -0.13 -3.66 5.32 30.82 0.16 -3.50 16 14 C 0.17 6.04 2.59 45.02 0.12 6.15 16 15 N -0.58 -26.22 2.35 -677.89 -1.59 -27.81 16 16 C -0.21 -11.20 8.06 84.03 0.68 -10.52 16 17 H 0.05 2.56 6.87 -2.91 -0.02 2.54 16 18 C -0.04 -2.23 4.90 84.86 0.42 -1.81 16 19 N -0.92 -54.06 11.36 21.65 0.25 -53.82 16 20 Si 0.94 46.31 29.61 68.60 2.03 48.35 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 C 0.13 5.81 5.57 86.38 0.48 6.30 16 25 C 0.07 2.43 7.39 71.98 0.53 2.96 16 26 O -0.58 -21.80 13.40 -148.98 -2.00 -23.80 16 27 C -0.12 -4.54 5.31 30.69 0.16 -4.37 16 28 C 0.12 3.66 6.43 86.38 0.56 4.22 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.05 1.26 6.35 -2.39 -0.02 1.25 16 32 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.14 1.40 7.86 -2.38 -0.02 1.38 16 36 H 0.12 1.82 6.67 -2.39 -0.02 1.80 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.39 5.93 -2.39 -0.01 1.37 16 39 H 0.04 1.41 7.03 -2.39 -0.02 1.39 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.11 7.87 -2.39 -0.02 2.09 16 42 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.07 3.48 5.35 -2.39 -0.01 3.47 16 44 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 45 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.37 9.62 9.12 -74.06 -0.68 8.95 16 48 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 49 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.07 2.21 7.00 -2.39 -0.02 2.19 16 51 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -77.20 404.14 1.37 -75.83 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.26 Total: 22.78 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 6.92 Total: 11.57 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -5.80 Total: -113.87 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -2.04 Total: -44.66 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.20 1.37 -75.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098367506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.125 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds