Wall clock time and date at job start Wed Apr 1 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30177 * 126.80208 * 2 1 4 4 O 1.20921 * 111.60496 * 180.25309 * 3 2 1 5 5 C 1.34043 * 111.56464 * 359.73910 * 4 3 2 6 6 C 1.50704 * 126.77379 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44883 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00939 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46754 * 359.97438 * 8 7 5 10 10 C 1.53002 * 109.47341 * 119.99582 * 8 7 5 11 11 C 1.50697 * 109.47362 * 240.00249 * 8 7 5 12 12 O 1.21283 * 119.99956 * 359.97438 * 11 8 7 13 13 N 1.34776 * 120.00125 * 179.97438 * 11 8 7 14 14 C 1.46501 * 119.99784 * 179.97438 * 13 11 8 15 15 C 1.54321 * 111.69319 * 298.98432 * 14 13 11 16 16 C 1.55055 * 104.06438 * 262.85352 * 15 14 13 17 17 C 1.55049 * 102.11184 * 319.87985 * 16 15 14 18 18 C 1.54322 * 103.93993 * 40.05786 * 17 16 15 19 19 H 1.08998 * 111.69996 * 98.06441 * 18 17 16 20 20 C 1.53781 * 109.06240 * 222.03481 * 18 17 16 21 21 N 1.47212 * 106.38381 * 94.87434 * 20 18 17 22 22 C 1.36935 * 126.70248 * 211.25586 * 21 20 18 23 23 H 1.07996 * 120.00367 * 14.10920 * 22 21 20 24 24 C 1.38817 * 119.99505 * 194.11259 * 22 21 20 25 25 N 1.31618 * 120.00104 * 8.95024 * 24 22 21 26 26 Si 1.86806 * 119.99409 * 188.95309 * 24 22 21 27 27 H 1.48492 * 109.46941 * 94.98448 * 26 24 22 28 28 H 1.48502 * 109.46744 * 214.97993 * 26 24 22 29 29 H 1.48496 * 109.47343 * 334.97797 * 26 24 22 30 30 C 1.47211 * 106.59155 * 31.28996 * 21 20 18 31 31 H 1.09003 * 109.46706 * 270.16997 * 1 2 3 32 32 H 1.09000 * 109.46946 * 30.16930 * 1 2 3 33 33 H 1.08995 * 109.46802 * 150.17194 * 1 2 3 34 34 H 1.09001 * 109.46905 * 270.00146 * 6 5 4 35 35 H 1.09000 * 109.47292 * 30.00273 * 6 5 4 36 36 H 1.08994 * 109.46915 * 150.00279 * 6 5 4 37 37 H 1.09004 * 109.46893 * 300.00858 * 10 8 7 38 38 H 1.09000 * 109.46750 * 60.00093 * 10 8 7 39 39 H 1.08994 * 109.47069 * 180.02562 * 10 8 7 40 40 H 0.96999 * 119.99784 * 359.97438 * 13 11 8 41 41 H 1.08995 * 110.53218 * 144.17180 * 15 14 13 42 42 H 1.09003 * 110.53394 * 21.54136 * 15 14 13 43 43 H 1.08999 * 110.90354 * 78.08194 * 16 15 14 44 44 H 1.08993 * 110.90791 * 201.64083 * 16 15 14 45 45 H 1.09005 * 110.53788 * 158.66727 * 17 16 15 46 46 H 1.09000 * 110.53497 * 281.44269 * 17 16 15 47 47 H 1.09001 * 110.07425 * 214.10689 * 20 18 17 48 48 H 1.09004 * 110.06936 * 335.64660 * 20 18 17 49 49 H 0.96999 * 119.99325 * 180.02562 * 25 24 22 50 50 H 1.09003 * 110.07658 * 87.94603 * 30 21 20 51 51 H 1.09000 * 110.07811 * 209.43110 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7254 -0.0050 5 6 3.6025 -0.6068 -0.0033 6 6 4.9023 -1.3695 -0.0076 7 6 2.3540 -1.1321 0.0029 8 6 1.9591 -2.5864 0.0065 9 1 2.8557 -3.2063 0.0029 10 6 1.1351 -2.8880 1.2599 11 6 1.1365 -2.8866 -1.2199 12 8 0.8942 -2.0062 -2.0181 13 7 0.6699 -4.1335 -1.4297 14 6 -0.1303 -4.4252 -2.6217 15 6 -1.4286 -3.5916 -2.6552 16 6 -2.5058 -4.5487 -2.0827 17 6 -2.1155 -5.9023 -2.7303 18 6 -0.5735 -5.9124 -2.6701 19 1 -0.2072 -6.4839 -1.8174 20 6 -0.0226 -6.4567 -3.9987 21 7 0.2671 -5.2837 -4.8397 22 6 0.1956 -5.2183 -6.2056 23 1 -0.3088 -5.9973 -6.7579 24 6 0.7716 -4.1506 -6.8804 25 7 1.5346 -3.2966 -6.2317 26 14 0.4636 -3.9260 -8.7092 27 1 -0.6666 -2.9838 -8.9087 28 1 1.6844 -3.3781 -9.3530 29 1 0.1283 -5.2376 -9.3195 30 6 0.6496 -4.1951 -3.9255 31 1 -0.3633 0.0030 1.0277 32 1 -0.3633 0.8885 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 5.2112 -1.5551 -1.0363 35 1 5.6683 -0.7850 0.5020 36 1 4.7674 -2.3201 0.5083 37 1 1.7302 -2.6707 2.1469 38 1 0.2385 -2.2680 1.2631 39 1 0.8498 -3.9400 1.2627 40 1 0.8639 -4.8377 -0.7915 41 1 -1.6743 -3.3077 -3.6785 42 1 -1.3308 -2.7062 -2.0269 43 1 -2.4391 -4.6038 -0.9962 44 1 -3.5041 -4.2415 -2.3942 45 1 -2.5259 -6.7332 -2.1564 46 1 -2.4581 -5.9444 -3.7642 47 1 0.8909 -7.0241 -3.8205 48 1 -0.7679 -7.0886 -4.4819 49 1 1.9367 -2.5504 -6.7032 50 1 1.7214 -4.2298 -3.7301 51 1 0.3794 -3.2315 -4.3574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099075975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:37 Heat of formation + Delta-G solvation = 40.653448 kcal Electronic energy + Delta-G solvation = -32949.658414 eV Core-core repulsion = 28852.574499 eV Total energy + Delta-G solvation = -4097.083914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.78182 -40.22990 -38.41667 -35.49105 -34.35615 -33.77987 -33.33797 -31.77813 -31.51842 -29.15054 -28.60497 -27.85580 -27.53612 -24.98858 -24.68881 -24.22655 -22.27803 -20.80642 -20.54627 -20.07683 -19.23907 -18.75832 -17.58424 -17.10987 -16.71940 -16.25476 -15.91851 -15.08966 -14.77457 -14.51559 -14.22592 -13.88172 -13.76495 -13.57000 -13.42752 -13.37997 -13.20421 -13.13557 -12.97619 -12.67324 -12.61377 -12.38381 -12.19992 -11.99388 -11.83219 -11.63059 -11.21357 -10.94457 -10.90711 -10.73191 -10.71016 -10.56483 -10.52370 -10.29957 -10.12565 -9.97065 -9.89014 -9.71059 -9.68137 -9.29671 -8.96572 -8.55153 -8.46376 -6.77486 -5.70423 -3.06566 1.56053 2.33527 3.03006 3.18731 3.41857 3.46678 3.49603 3.53817 4.27201 4.51763 4.52216 4.64100 4.80355 4.84959 4.97292 5.07822 5.13231 5.22381 5.27171 5.29600 5.38353 5.44132 5.51996 5.55899 5.57959 5.61528 5.72720 5.74852 5.79298 5.84492 5.88690 5.94022 5.96905 6.02651 6.05460 6.08603 6.14367 6.28321 6.32529 6.35559 6.52962 6.65618 6.70900 6.80948 6.86002 7.10937 7.47140 7.67560 7.84551 7.98327 8.31746 8.43701 8.67889 9.20732 9.83066 10.54253 11.41495 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.003898 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.789649 B = 7180.773356 C = 8484.242386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.375 5.375 4 O 0.092 5.908 5 C -0.029 4.029 6 C -0.074 4.074 7 C -0.176 4.176 8 C -0.033 4.033 9 H 0.104 0.896 10 C -0.141 4.141 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.710 5.710 14 C 0.150 3.850 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.135 3.865 21 N -0.592 5.592 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.907 5.907 26 Si 0.908 3.092 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.179 3.821 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.391 0.609 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.013 0.987 48 H 0.045 0.955 49 H 0.254 0.746 50 H 0.016 0.984 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 -1.798 19.109 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.082 5.082 4 O 0.030 5.970 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.180 4.180 8 C -0.055 4.055 9 H 0.122 0.878 10 C -0.199 4.199 11 C 0.297 3.703 12 O -0.381 6.381 13 N -0.362 5.362 14 C 0.063 3.937 15 C -0.148 4.148 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.128 4.128 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.317 5.317 22 C -0.363 4.363 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.552 5.552 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.052 3.948 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.225 0.775 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.030 0.970 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.034 0.966 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.326 0.320 18.298 18.304 hybrid contribution 0.090 -1.012 -0.719 1.244 sum -0.236 -0.691 17.579 17.594 Atomic orbital electron populations 1.20250 0.86339 1.04721 1.02101 1.23202 0.98698 0.87996 1.00551 1.73788 0.89215 1.23950 1.21268 1.84772 1.21790 1.22177 1.68306 1.24134 0.97921 0.84123 1.03112 1.20341 0.90098 0.98292 1.04427 1.20246 0.91745 0.95889 1.10121 1.19555 0.99794 0.91144 0.94987 0.87770 1.21791 1.00243 1.02148 0.95672 1.20187 0.80294 0.82972 0.86845 1.90789 1.56501 1.45332 1.45517 1.45934 1.54560 1.10365 1.25314 1.22046 0.91479 0.93482 0.86712 1.22642 0.93006 0.97172 1.02027 1.22592 0.98612 0.95971 0.99021 1.22448 0.94534 0.96587 1.01293 1.22890 0.95901 0.94921 0.99041 0.90785 1.21392 0.96723 0.91326 0.89701 1.44394 1.79910 1.05669 1.01688 1.18957 1.29725 1.07706 0.79928 0.90634 1.24893 0.98274 0.98888 0.97904 1.69960 1.34029 1.16385 1.34815 0.86176 0.77267 0.77806 0.84954 1.21553 1.21751 1.20545 1.21300 0.94375 0.94279 0.84822 0.91003 0.90785 0.89238 0.89134 0.89940 0.89270 0.91540 0.91667 0.91446 0.77533 0.90252 0.91818 0.92417 0.92182 0.92507 0.90763 0.96950 0.93658 0.93621 0.96580 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 8.93 36.01 0.32 -0.71 16 2 C 0.05 0.84 6.69 -82.09 -0.55 0.29 16 3 N -0.37 -6.21 12.07 33.43 0.40 -5.81 16 4 O 0.09 1.40 11.20 17.17 0.19 1.59 16 5 C -0.03 -0.38 7.49 -35.30 -0.26 -0.64 16 6 C -0.07 -0.63 10.17 36.01 0.37 -0.27 16 7 C -0.18 -2.44 4.47 -104.42 -0.47 -2.91 16 8 C -0.03 -0.38 3.02 -92.93 -0.28 -0.66 16 9 H 0.10 1.00 7.13 -51.93 -0.37 0.63 16 10 C -0.14 -1.21 9.00 37.16 0.33 -0.87 16 11 C 0.51 8.06 5.75 -10.99 -0.06 8.00 16 12 O -0.51 -10.42 11.96 5.56 0.07 -10.35 16 13 N -0.71 -10.40 5.12 -45.55 -0.23 -10.63 16 14 C 0.15 2.70 0.93 -129.59 -0.12 2.58 16 15 C -0.11 -1.96 5.50 -24.95 -0.14 -2.10 16 16 C -0.12 -1.76 6.92 -24.56 -0.17 -1.93 16 17 C -0.11 -1.62 6.23 -24.96 -0.16 -1.77 16 18 C -0.11 -1.73 3.67 -88.32 -0.32 -2.05 16 19 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 20 C 0.14 2.72 6.57 -3.25 -0.02 2.70 16 21 N -0.59 -14.98 3.39 -171.21 -0.58 -15.56 16 22 C -0.23 -6.55 10.28 -15.06 -0.15 -6.71 16 23 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 24 C 0.00 -0.05 5.39 -17.43 -0.09 -0.14 16 25 N -0.91 -27.55 10.84 55.49 0.60 -26.95 16 26 Si 0.91 22.43 29.56 -169.99 -5.03 17.41 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.18 4.38 3.71 -3.31 -0.01 4.37 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.30 5.79 -51.93 -0.30 1.00 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.57 7.39 -51.93 -0.38 0.19 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 39 H 0.07 0.46 7.57 -51.93 -0.39 0.06 16 40 H 0.39 4.33 7.75 -40.82 -0.32 4.01 16 41 H 0.08 1.68 7.56 -51.93 -0.39 1.29 16 42 H 0.06 1.14 6.64 -51.93 -0.34 0.79 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.05 0.88 7.58 -51.93 -0.39 0.48 16 49 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 50 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 51 H 0.09 2.51 6.19 -51.93 -0.32 2.19 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -35.06 393.33 -8.57 -43.63 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.13 Total: 3.56 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.79 Total: -2.82 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.19 Total: -58.95 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.26 Total: -8.76 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.06 -8.57 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099075975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.284 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds