Wall clock time and date at job start Wed Apr 1 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35316 * 126.66634 * 2 1 4 4 C 1.42271 * 103.92055 * 180.02562 * 3 2 1 5 5 C 1.48330 * 126.93579 * 180.26068 * 4 3 2 6 6 O 1.21496 * 119.99900 * 356.07117 * 5 4 3 7 7 N 1.34782 * 119.99854 * 176.06386 * 5 4 3 8 8 C 1.46924 * 120.63198 * 5.63848 * 7 5 4 9 9 C 1.53190 * 108.77686 * 126.36350 * 8 7 5 10 10 C 1.53037 * 109.31386 * 54.63345 * 9 8 7 11 11 C 1.53039 * 109.53984 * 298.63709 * 10 9 8 12 12 C 1.46927 * 120.62850 * 185.34882 * 7 5 4 13 13 H 1.08999 * 109.58450 * 113.84761 * 12 7 5 14 14 C 1.53004 * 109.58649 * 353.42637 * 12 7 5 15 15 C 1.53004 * 112.84961 * 297.74241 * 14 12 7 16 16 N 1.46501 * 109.47262 * 289.50766 * 15 14 12 17 17 C 1.36937 * 120.00019 * 182.15275 * 16 15 14 18 18 H 1.07995 * 119.99842 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99868 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47398 * 59.99975 * 21 19 17 23 23 H 1.48499 * 109.46985 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47070 * 299.99793 * 21 19 17 25 25 C 1.53783 * 113.61354 * 166.54889 * 14 12 7 26 26 C 1.53947 * 87.02108 * 220.04399 * 25 14 12 27 27 C 1.53780 * 113.61587 * 68.94175 * 14 12 7 28 28 N 1.30979 * 106.12700 * 359.97438 * 4 3 2 29 29 O 1.20909 * 111.43946 * 0.02562 * 28 4 3 30 30 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46890 * 299.99879 * 1 2 3 32 32 H 1.08998 * 109.46643 * 60.00425 * 1 2 3 33 33 H 1.08002 * 128.03623 * 0.03527 * 3 2 1 34 34 H 1.08999 * 109.58082 * 246.15639 * 8 7 5 35 35 H 1.09005 * 109.58317 * 6.42772 * 8 7 5 36 36 H 1.09003 * 109.49482 * 174.58865 * 9 8 7 37 37 H 1.08999 * 109.49849 * 294.64631 * 9 8 7 38 38 H 1.09005 * 109.46018 * 58.65566 * 10 9 8 39 39 H 1.09000 * 109.45823 * 178.61160 * 10 9 8 40 40 H 1.08998 * 109.49857 * 181.31923 * 11 10 9 41 41 H 1.09007 * 109.49580 * 301.38122 * 11 10 9 42 42 H 1.09006 * 109.46822 * 49.50475 * 15 14 12 43 43 H 1.08995 * 109.46983 * 169.50536 * 15 14 12 44 44 H 0.97004 * 119.99665 * 2.15438 * 16 15 14 45 45 H 0.97005 * 120.00206 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.61423 * 334.56753 * 25 14 12 47 47 H 1.09000 * 113.61247 * 105.46820 * 25 14 12 48 48 H 1.09000 * 113.54408 * 270.81309 * 26 25 14 49 49 H 1.09002 * 113.74483 * 139.93873 * 26 25 14 50 50 H 1.09001 * 113.61027 * 254.52988 * 27 14 12 51 51 H 1.08999 * 113.61214 * 25.43295 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5353 -0.0006 5 6 4.9076 1.2841 0.0045 6 8 4.9022 2.4972 -0.0622 7 7 6.0770 0.6187 0.0833 8 6 6.1072 -0.8496 0.0406 9 6 7.0728 -1.2910 -1.0637 10 6 8.4386 -0.6408 -0.8316 11 6 8.2977 0.8819 -0.8933 12 6 7.3464 1.3481 0.2072 13 1 7.7912 1.1445 1.1813 14 6 7.0917 2.8496 0.0603 15 6 6.5248 3.2247 -1.3105 16 7 7.5640 3.0613 -2.3301 17 6 7.2995 3.3821 -3.6348 18 1 6.3249 3.7558 -3.9121 19 6 8.2840 3.2268 -4.6010 20 7 9.4718 2.7718 -4.2630 21 14 7.9234 3.6650 -6.3807 22 1 7.5543 5.1005 -6.4720 23 1 9.1302 3.4101 -7.2075 24 1 6.7987 2.8321 -6.8774 25 6 8.2816 3.7217 0.4944 26 6 7.2499 4.6745 1.1248 27 6 6.3128 3.4604 1.2372 28 7 3.4762 -0.7657 -0.0003 29 8 2.3073 -1.0750 -0.0002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.0302 2.1272 0.0005 34 1 6.4489 -1.2361 1.0008 35 1 5.1078 -1.2296 -0.1715 36 1 7.1780 -2.3758 -1.0428 37 1 6.6824 -0.9821 -2.0334 38 1 8.8171 -0.9310 0.1486 39 1 9.1345 -0.9727 -1.6021 40 1 9.2747 1.3437 -0.7512 41 1 7.8965 1.1710 -1.8648 42 1 5.6809 2.5756 -1.5446 43 1 6.1916 4.2623 -1.2942 44 1 8.4394 2.7260 -2.0809 45 1 10.1599 2.6636 -4.9381 46 1 8.9333 3.2396 1.2231 47 1 8.8292 4.1598 -0.3401 48 1 6.8900 5.4419 0.4394 49 1 7.5578 5.0790 2.0891 50 1 5.2732 3.6878 1.0015 51 1 6.4253 2.9068 2.1694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105500903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:03 Heat of formation + Delta-G solvation = 141.703671 kcal Electronic energy + Delta-G solvation = -33651.057707 eV Core-core repulsion = 29558.355660 eV Total energy + Delta-G solvation = -4092.702048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.09793 -41.16918 -37.87553 -37.16153 -34.24973 -34.08609 -33.61887 -32.28531 -31.23350 -30.25648 -28.06029 -26.93473 -25.60533 -25.24117 -24.04130 -23.76935 -22.57007 -22.12044 -21.49156 -20.40997 -18.97139 -17.87628 -17.75243 -17.45245 -16.81647 -16.54803 -15.92313 -15.57678 -14.90540 -14.59229 -14.29298 -14.14238 -13.92026 -13.82050 -13.65996 -13.56546 -13.49197 -13.18700 -12.83486 -12.69407 -12.60932 -12.17471 -12.01398 -11.74782 -11.58688 -11.41987 -11.25295 -10.87420 -10.77002 -10.74159 -10.61613 -10.40751 -10.13468 -10.08020 -9.99397 -9.56350 -9.55809 -9.43086 -9.38529 -9.25008 -9.05087 -8.58899 -8.04177 -6.63281 -5.65690 -2.89849 1.11380 1.65819 2.79402 3.08982 3.36601 3.49911 3.54074 3.55324 3.96675 4.34666 4.69529 4.81908 4.87907 5.02304 5.08863 5.11207 5.17449 5.22977 5.26402 5.31255 5.36429 5.43963 5.48826 5.52161 5.61784 5.68252 5.69505 5.76980 5.82960 5.87305 6.06430 6.12218 6.19074 6.19941 6.25267 6.33780 6.39537 6.47483 6.54750 6.59090 6.60464 6.80892 6.90313 7.00936 7.03980 7.25576 7.26625 7.36928 7.63461 7.82624 8.00903 8.44762 8.57628 9.66029 10.29053 10.63893 11.57330 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.004236 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.677374 B = 6607.837636 C = 7140.087461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.188 4.188 4 C -0.002 4.002 5 C 0.556 3.444 6 O -0.468 6.468 7 N -0.582 5.582 8 C 0.084 3.916 9 C -0.131 4.131 10 C -0.115 4.115 11 C -0.158 4.158 12 C 0.170 3.830 13 H 0.061 0.939 14 C -0.061 4.061 15 C 0.184 3.816 16 N -0.735 5.735 17 C -0.230 4.230 18 H 0.065 0.935 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.289 1.289 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.120 4.120 28 N -0.337 5.337 29 O 0.103 5.897 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.049 0.951 43 H 0.016 0.984 44 H 0.386 0.614 45 H 0.253 0.747 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.105 0.895 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -8.086 14.091 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.161 4.161 5 C 0.343 3.657 6 O -0.342 6.342 7 N -0.315 5.315 8 C -0.039 4.039 9 C -0.169 4.169 10 C -0.153 4.153 11 C -0.197 4.197 12 C 0.068 3.932 13 H 0.079 0.921 14 C -0.062 4.062 15 C 0.058 3.942 16 N -0.383 5.383 17 C -0.362 4.362 18 H 0.083 0.917 19 C -0.211 4.211 20 N -0.585 5.585 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.175 4.175 26 C -0.180 4.180 27 C -0.158 4.158 28 N -0.044 5.044 29 O 0.035 5.965 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.196 0.804 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.224 0.776 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.112 -8.374 13.915 20.873 hybrid contribution 0.079 0.729 -0.947 1.198 sum -13.034 -7.645 12.968 19.912 Atomic orbital electron populations 1.20354 0.83726 1.04679 1.04288 1.24438 0.96365 0.85676 1.03357 1.22414 0.89905 1.01471 1.07191 1.23830 0.97231 0.89790 1.05257 1.16983 0.81226 0.86581 0.80885 1.90963 1.85676 1.12017 1.45544 1.47663 1.05448 1.06912 1.71496 1.22444 1.03424 0.79314 0.98751 1.21867 0.95988 0.99726 0.99329 1.21486 0.96401 0.96550 1.00838 1.22530 0.99394 0.94454 1.03284 1.21232 0.82524 0.91489 0.97940 0.92101 1.22117 0.95830 0.90938 0.97343 1.21043 0.91042 0.97718 0.84405 1.43133 1.12853 1.78200 1.04103 1.19208 0.97081 1.35066 0.84849 0.91674 1.24648 0.96048 1.02756 0.97664 1.69635 1.03420 1.52758 1.32669 0.86339 0.76646 0.78103 0.85566 1.21491 1.21831 1.21576 1.23026 0.96344 0.97800 1.00354 1.22867 0.98220 0.97242 0.99700 1.23483 1.00463 0.96049 0.95756 1.73889 0.96407 1.15758 1.18345 1.84784 1.11586 1.33781 1.66397 0.89842 0.89094 0.88984 0.80369 0.92233 0.86276 0.91445 0.91220 0.93167 0.91687 0.91054 0.85519 0.93357 0.96616 0.77619 0.93715 0.91422 0.90440 0.90435 0.92865 0.87720 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.33 7.47 -35.35 -0.26 -0.60 16 3 C -0.19 -2.20 10.92 -39.07 -0.43 -2.63 16 4 C 0.00 -0.03 6.95 -82.53 -0.57 -0.60 16 5 C 0.56 9.38 6.41 -12.11 -0.08 9.30 16 6 O -0.47 -8.49 7.25 5.37 0.04 -8.46 16 7 N -0.58 -9.50 2.96 -166.40 -0.49 -9.99 16 8 C 0.08 1.20 6.25 -3.71 -0.02 1.18 16 9 C -0.13 -1.93 6.08 -26.61 -0.16 -2.09 16 10 C -0.12 -1.81 5.89 -26.69 -0.16 -1.96 16 11 C -0.16 -2.95 3.84 -26.84 -0.10 -3.06 16 12 C 0.17 2.91 2.32 -67.82 -0.16 2.75 16 13 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 14 C -0.06 -1.12 0.08 -153.69 -0.01 -1.14 16 15 C 0.18 4.10 4.05 -4.04 -0.02 4.09 16 16 N -0.74 -19.00 3.53 -59.91 -0.21 -19.21 16 17 C -0.23 -6.63 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.94 -28.27 13.06 55.49 0.72 -27.55 16 21 Si 0.90 23.06 29.55 -169.99 -5.02 18.03 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C -0.14 -2.42 6.77 -25.83 -0.17 -2.59 16 26 C -0.14 -2.31 7.74 -25.83 -0.20 -2.51 16 27 C -0.12 -1.98 5.67 -25.92 -0.15 -2.12 16 28 N -0.34 -4.61 8.51 33.29 0.28 -4.33 16 29 O 0.10 1.18 11.18 17.24 0.19 1.38 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.18 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.12 1.71 3.92 -69.24 -0.27 1.44 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.37 7.84 -51.93 -0.41 0.97 16 41 H 0.13 2.94 5.09 -51.92 -0.26 2.67 16 42 H 0.05 1.16 4.88 -40.73 -0.20 0.96 16 43 H 0.02 0.38 7.34 -51.93 -0.38 0.00 16 44 H 0.39 10.16 4.64 -40.82 -0.19 9.97 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 47 H 0.08 1.58 7.54 -51.93 -0.39 1.19 16 48 H 0.08 1.34 7.65 -51.93 -0.40 0.94 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.11 1.83 5.50 -41.70 -0.23 1.60 16 51 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -31.88 379.91 -8.89 -40.77 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.77 Total: 12.93 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.37 Total: -9.31 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.30 Total: -61.07 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.23 Total: -7.08 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.88 -8.89 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105500903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.477 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds