Wall clock time and date at job start Wed Apr 1 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41261 * 126.70657 * 2 1 4 4 C 1.36825 * 103.84796 * 179.97438 * 3 2 1 5 5 C 1.47518 * 126.94617 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99521 * 5.85511 * 5 4 3 7 7 N 1.34773 * 120.00235 * 185.85016 * 5 4 3 8 8 C 1.46934 * 120.63012 * 353.25951 * 7 5 4 9 9 C 1.53187 * 108.89292 * 126.33883 * 8 7 5 10 10 C 1.53351 * 109.15128 * 54.57469 * 9 8 7 11 11 C 1.53040 * 109.60946 * 298.71509 * 10 9 8 12 12 C 1.46917 * 120.63092 * 173.27723 * 7 5 4 13 13 H 1.09002 * 109.58861 * 113.80322 * 12 7 5 14 14 C 1.53001 * 109.59023 * 353.51997 * 12 7 5 15 15 C 1.53003 * 112.84570 * 302.90208 * 14 12 7 16 16 N 1.46503 * 109.47090 * 283.20546 * 15 14 12 17 17 C 1.36932 * 120.00107 * 181.89241 * 16 15 14 18 18 H 1.08002 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00102 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00282 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47365 * 59.99903 * 21 19 17 23 23 H 1.48504 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47272 * 299.99728 * 21 19 17 25 25 C 1.53774 * 113.61726 * 171.70091 * 14 12 7 26 26 C 1.53952 * 87.02220 * 220.04811 * 25 14 12 27 27 C 1.53778 * 87.11014 * 25.36251 * 26 25 14 28 28 O 1.34645 * 106.11060 * 0.24405 * 4 3 2 29 29 N 1.20885 * 111.46791 * 359.56075 * 28 4 3 30 30 H 1.09003 * 109.46898 * 89.99582 * 1 2 3 31 31 H 1.08993 * 109.47493 * 210.00130 * 1 2 3 32 32 H 1.09009 * 109.46831 * 330.00473 * 1 2 3 33 33 H 1.07998 * 128.07741 * 359.96407 * 3 2 1 34 34 H 1.09000 * 109.58458 * 246.20135 * 8 7 5 35 35 H 1.08996 * 109.58437 * 6.48092 * 8 7 5 36 36 H 1.08997 * 109.49639 * 174.65918 * 9 8 7 37 37 H 1.09005 * 109.50023 * 294.75302 * 9 8 7 38 38 H 1.08993 * 109.42077 * 178.66940 * 10 9 8 39 39 H 1.09001 * 109.41449 * 58.75258 * 10 9 8 40 40 H 1.09002 * 109.49678 * 301.41965 * 11 10 9 41 41 H 1.09003 * 109.52356 * 181.33745 * 11 10 9 42 42 H 1.08993 * 109.47381 * 43.20976 * 15 14 12 43 43 H 1.08997 * 109.46808 * 163.21088 * 15 14 12 44 44 H 0.97002 * 119.99778 * 1.90146 * 16 15 14 45 45 H 0.96994 * 120.00407 * 180.02562 * 20 19 17 46 46 H 1.09005 * 113.61582 * 334.57226 * 25 14 12 47 47 H 1.09002 * 113.61245 * 105.46915 * 25 14 12 48 48 H 1.08993 * 113.53871 * 270.81515 * 26 25 14 49 49 H 1.09000 * 113.74539 * 139.94644 * 26 25 14 50 50 H 1.08996 * 113.61858 * 220.09146 * 27 26 25 51 51 H 1.09008 * 113.61178 * 89.18327 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8871 1.3429 0.0003 6 8 4.8856 2.5541 0.1069 7 7 6.0536 0.6783 -0.1180 8 6 6.0834 -0.7907 -0.0994 9 6 6.8195 -1.2876 -1.3475 10 6 8.2027 -0.6286 -1.4117 11 6 8.0438 0.8901 -1.5138 12 6 7.3195 1.4087 -0.2675 13 1 7.9423 1.2444 0.6118 14 6 7.0339 2.9039 -0.4217 15 6 6.1096 3.2136 -1.6009 16 7 6.8675 3.1259 -2.8516 17 6 6.2546 3.4025 -4.0445 18 1 5.2125 3.6857 -4.0633 19 6 6.9725 3.3188 -5.2295 20 7 8.2426 2.9742 -5.2066 21 14 6.1362 3.6954 -6.8568 22 1 5.6300 5.0914 -6.8419 23 1 7.1128 3.5354 -7.9640 24 1 5.0011 2.7594 -7.0583 25 6 8.2973 3.7796 -0.3826 26 6 7.4803 4.7805 0.4545 27 6 6.6111 3.5886 0.8888 28 8 3.4539 -0.7361 -0.0046 29 7 2.2847 -1.0433 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 2.0678 2.1746 -0.0005 34 1 6.6053 -1.1342 0.7937 35 1 5.0641 -1.1768 -0.0983 36 1 6.9307 -2.3707 -1.2971 37 1 6.2484 -1.0211 -2.2370 38 1 8.7396 -0.9972 -2.2857 39 1 8.7637 -0.8752 -0.5103 40 1 7.4614 1.1360 -2.4018 41 1 9.0271 1.3554 -1.5833 42 1 5.2917 2.4935 -1.6204 43 1 5.7052 4.2198 -1.4910 44 1 7.8035 2.8718 -2.8347 45 1 8.7444 2.9161 -6.0347 46 1 9.1254 3.3274 0.1632 47 1 8.5925 4.1641 -1.3590 48 1 6.9447 5.5154 -0.1464 49 1 8.0431 5.2314 1.2719 50 1 5.5469 3.8190 0.9374 51 1 6.9774 3.0840 1.7829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105506596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:12 Heat of formation + Delta-G solvation = 129.969508 kcal Electronic energy + Delta-G solvation = -33752.257202 eV Core-core repulsion = 29659.046322 eV Total energy + Delta-G solvation = -4093.210879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.02863 -41.23089 -37.93374 -37.30048 -34.99481 -34.02436 -32.87872 -31.97413 -31.14128 -30.36638 -28.86024 -26.86947 -25.59950 -25.33328 -23.86209 -23.60729 -22.59437 -22.22870 -21.58914 -20.49762 -19.43122 -17.92698 -17.79754 -17.44378 -16.70511 -16.46891 -16.09082 -15.52067 -15.11790 -14.60606 -14.37161 -14.09041 -14.00824 -13.69491 -13.60630 -13.54418 -13.42502 -13.11905 -12.92204 -12.75812 -12.70290 -12.20556 -11.95682 -11.75300 -11.53974 -11.41829 -11.30802 -10.99431 -10.80014 -10.76568 -10.67135 -10.43331 -10.25614 -10.16715 -10.09323 -9.81601 -9.64090 -9.54279 -9.39249 -9.27072 -9.13197 -8.67160 -8.30964 -6.71399 -5.68167 -2.93084 0.86564 2.00651 2.58468 3.08903 3.23456 3.48013 3.52595 3.53515 3.96099 4.28424 4.67063 4.71842 4.90318 4.99476 5.04709 5.09941 5.17430 5.22861 5.26963 5.28233 5.31493 5.44180 5.45465 5.50614 5.58152 5.59991 5.63772 5.67657 5.77507 5.89346 5.96505 6.01920 6.07728 6.15830 6.17964 6.24293 6.34117 6.36944 6.44069 6.48919 6.54866 6.74660 6.84272 6.93185 6.97555 7.09070 7.19113 7.21690 7.44038 7.79524 8.04397 8.33870 8.53551 9.63522 10.25820 10.60802 11.54829 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008775 B = 0.004661 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.178413 B = 6006.268929 C = 6883.351120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.160 4.160 4 C -0.068 4.068 5 C 0.580 3.420 6 O -0.469 6.469 7 N -0.585 5.585 8 C 0.095 3.905 9 C -0.133 4.133 10 C -0.116 4.116 11 C -0.149 4.149 12 C 0.170 3.830 13 H 0.067 0.933 14 C -0.066 4.066 15 C 0.186 3.814 16 N -0.734 5.734 17 C -0.230 4.230 18 H 0.065 0.935 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.289 1.289 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.113 4.113 28 O 0.107 5.893 29 N -0.358 5.358 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.181 0.819 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.019 0.981 44 H 0.384 0.616 45 H 0.253 0.747 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.103 0.897 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 -7.619 15.414 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C -0.182 4.182 4 C -0.133 4.133 5 C 0.367 3.633 6 O -0.345 6.345 7 N -0.317 5.317 8 C -0.028 4.028 9 C -0.172 4.172 10 C -0.154 4.154 11 C -0.187 4.187 12 C 0.069 3.931 13 H 0.085 0.915 14 C -0.067 4.067 15 C 0.060 3.940 16 N -0.381 5.381 17 C -0.362 4.362 18 H 0.083 0.917 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.174 4.174 26 C -0.182 4.182 27 C -0.151 4.151 28 O 0.040 5.960 29 N -0.064 5.064 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.199 0.801 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.220 0.780 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.121 0.879 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.183 -8.226 15.353 18.841 hybrid contribution -0.085 0.772 -1.088 1.336 sum -7.268 -7.454 14.265 17.660 Atomic orbital electron populations 1.20188 0.85576 1.03827 1.03652 1.23585 0.99162 0.88487 1.03362 1.22819 0.90032 1.01634 1.03731 1.24721 0.97947 0.83447 1.07200 1.16820 0.80702 0.86687 0.79135 1.91081 1.84596 1.11364 1.47456 1.47844 1.06266 1.06902 1.70723 1.22201 1.02627 0.79157 0.98782 1.21952 0.97202 0.99836 0.98181 1.21546 0.96047 0.96296 1.01469 1.22352 1.01840 0.94363 1.00166 1.21352 0.82508 0.91546 0.97743 0.91549 1.22134 0.96418 0.90741 0.97410 1.20883 0.92042 0.98030 0.83050 1.42894 1.11557 1.82569 1.01074 1.19177 0.94569 1.37668 0.84763 0.91704 1.24642 0.95929 1.03088 0.97363 1.69631 1.07301 1.55283 1.26229 0.86352 0.78154 0.78046 0.84171 1.21478 1.21807 1.21580 1.23007 0.95905 0.97360 1.01093 1.22877 0.98965 0.97110 0.99224 1.23371 1.00825 0.95717 0.95146 1.85033 1.20620 1.22668 1.67654 1.73674 0.90027 1.24869 1.17875 0.89936 0.90490 0.89824 0.80121 0.91112 0.88339 0.91014 0.90944 0.91562 0.92773 0.86705 0.90826 0.95016 0.96262 0.77967 0.93697 0.91342 0.90166 0.90436 0.92822 0.87943 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.47 36.00 0.38 -0.22 16 2 C 0.01 0.15 7.31 -82.17 -0.60 -0.45 16 3 C -0.16 -2.03 10.92 -38.95 -0.43 -2.46 16 4 C -0.07 -0.96 7.00 -36.31 -0.25 -1.22 16 5 C 0.58 9.04 5.89 -12.48 -0.07 8.97 16 6 O -0.47 -7.95 7.78 5.29 0.04 -7.91 16 7 N -0.58 -8.52 2.93 -166.45 -0.49 -9.01 16 8 C 0.10 1.16 6.34 -3.71 -0.02 1.13 16 9 C -0.13 -1.69 6.11 -26.45 -0.16 -1.85 16 10 C -0.12 -1.57 5.89 -26.53 -0.16 -1.73 16 11 C -0.15 -2.49 4.07 -26.61 -0.11 -2.60 16 12 C 0.17 2.62 2.33 -67.60 -0.16 2.46 16 13 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 14 C -0.07 -1.14 0.07 -153.70 -0.01 -1.15 16 15 C 0.19 3.96 3.89 -4.04 -0.02 3.95 16 16 N -0.73 -18.35 3.68 -59.91 -0.22 -18.58 16 17 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 18 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 21 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C -0.14 -2.27 6.50 -25.83 -0.17 -2.44 16 26 C -0.14 -2.25 7.74 -25.83 -0.20 -2.45 16 27 C -0.11 -1.76 5.77 -25.92 -0.15 -1.91 16 28 O 0.11 1.47 7.75 15.54 0.12 1.59 16 29 N -0.36 -4.89 12.04 33.52 0.40 -4.49 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.19 3.80 -54.78 -0.21 0.98 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 2.45 5.48 -51.93 -0.28 2.16 16 41 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16 42 H 0.03 0.71 4.72 -50.93 -0.24 0.47 16 43 H 0.02 0.45 7.40 -51.93 -0.38 0.06 16 44 H 0.38 9.82 4.90 -40.82 -0.20 9.62 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 47 H 0.08 1.59 7.08 -51.93 -0.37 1.22 16 48 H 0.08 1.31 7.73 -51.93 -0.40 0.91 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 1.71 5.52 -54.05 -0.30 1.42 16 51 H 0.06 0.84 8.09 -51.92 -0.42 0.42 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -30.95 380.25 -8.92 -39.87 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.83 Total: 11.31 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.37 Total: -9.13 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.42 Total: -59.18 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.16 Total: -6.32 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.95 -8.92 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105506596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.841 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds