Wall clock time and date at job start Wed Apr 1 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41261 * 126.70657 * 2 1 4 4 C 1.36825 * 103.84796 * 179.97438 * 3 2 1 5 5 C 1.47518 * 126.94617 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99521 * 5.85511 * 5 4 3 7 7 N 1.34773 * 120.00235 * 185.85016 * 5 4 3 8 8 C 1.46934 * 120.63012 * 353.25951 * 7 5 4 9 9 C 1.53187 * 108.89292 * 126.33883 * 8 7 5 10 10 C 1.53351 * 109.15128 * 54.57469 * 9 8 7 11 11 C 1.53040 * 109.60946 * 298.71509 * 10 9 8 12 12 C 1.46917 * 120.63092 * 173.27723 * 7 5 4 13 13 H 1.09002 * 109.58861 * 113.80322 * 12 7 5 14 14 C 1.53001 * 109.59023 * 353.51997 * 12 7 5 15 15 C 1.53003 * 112.84570 * 302.90208 * 14 12 7 16 16 N 1.46503 * 109.47090 * 283.20546 * 15 14 12 17 17 C 1.36932 * 120.00107 * 181.89241 * 16 15 14 18 18 H 1.08002 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00102 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00282 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47365 * 59.99903 * 21 19 17 23 23 H 1.48504 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47272 * 299.99728 * 21 19 17 25 25 C 1.53774 * 113.61726 * 171.70091 * 14 12 7 26 26 C 1.53952 * 87.02220 * 220.04811 * 25 14 12 27 27 C 1.53778 * 87.11014 * 25.36251 * 26 25 14 28 28 O 1.34645 * 106.11060 * 0.24405 * 4 3 2 29 29 N 1.20885 * 111.46791 * 359.56075 * 28 4 3 30 30 H 1.09003 * 109.46898 * 89.99582 * 1 2 3 31 31 H 1.08993 * 109.47493 * 210.00130 * 1 2 3 32 32 H 1.09009 * 109.46831 * 330.00473 * 1 2 3 33 33 H 1.07998 * 128.07741 * 359.96407 * 3 2 1 34 34 H 1.09000 * 109.58458 * 246.20135 * 8 7 5 35 35 H 1.08996 * 109.58437 * 6.48092 * 8 7 5 36 36 H 1.08997 * 109.49639 * 174.65918 * 9 8 7 37 37 H 1.09005 * 109.50023 * 294.75302 * 9 8 7 38 38 H 1.08993 * 109.42077 * 178.66940 * 10 9 8 39 39 H 1.09001 * 109.41449 * 58.75258 * 10 9 8 40 40 H 1.09002 * 109.49678 * 301.41965 * 11 10 9 41 41 H 1.09003 * 109.52356 * 181.33745 * 11 10 9 42 42 H 1.08993 * 109.47381 * 43.20976 * 15 14 12 43 43 H 1.08997 * 109.46808 * 163.21088 * 15 14 12 44 44 H 0.97002 * 119.99778 * 1.90146 * 16 15 14 45 45 H 0.96994 * 120.00407 * 180.02562 * 20 19 17 46 46 H 1.09005 * 113.61582 * 334.57226 * 25 14 12 47 47 H 1.09002 * 113.61245 * 105.46915 * 25 14 12 48 48 H 1.08993 * 113.53871 * 270.81515 * 26 25 14 49 49 H 1.09000 * 113.74539 * 139.94644 * 26 25 14 50 50 H 1.08996 * 113.61858 * 220.09146 * 27 26 25 51 51 H 1.09008 * 113.61178 * 89.18327 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8871 1.3429 0.0003 6 8 4.8856 2.5541 0.1069 7 7 6.0536 0.6783 -0.1180 8 6 6.0834 -0.7907 -0.0994 9 6 6.8195 -1.2876 -1.3475 10 6 8.2027 -0.6286 -1.4117 11 6 8.0438 0.8901 -1.5138 12 6 7.3195 1.4087 -0.2675 13 1 7.9423 1.2444 0.6118 14 6 7.0339 2.9039 -0.4217 15 6 6.1096 3.2136 -1.6009 16 7 6.8675 3.1259 -2.8516 17 6 6.2546 3.4025 -4.0445 18 1 5.2125 3.6857 -4.0633 19 6 6.9725 3.3188 -5.2295 20 7 8.2426 2.9742 -5.2066 21 14 6.1362 3.6954 -6.8568 22 1 5.6300 5.0914 -6.8419 23 1 7.1128 3.5354 -7.9640 24 1 5.0011 2.7594 -7.0583 25 6 8.2973 3.7796 -0.3826 26 6 7.4803 4.7805 0.4545 27 6 6.6111 3.5886 0.8888 28 8 3.4539 -0.7361 -0.0046 29 7 2.2847 -1.0433 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 2.0678 2.1746 -0.0005 34 1 6.6053 -1.1342 0.7937 35 1 5.0641 -1.1768 -0.0983 36 1 6.9307 -2.3707 -1.2971 37 1 6.2484 -1.0211 -2.2370 38 1 8.7396 -0.9972 -2.2857 39 1 8.7637 -0.8752 -0.5103 40 1 7.4614 1.1360 -2.4018 41 1 9.0271 1.3554 -1.5833 42 1 5.2917 2.4935 -1.6204 43 1 5.7052 4.2198 -1.4910 44 1 7.8035 2.8718 -2.8347 45 1 8.7444 2.9161 -6.0347 46 1 9.1254 3.3274 0.1632 47 1 8.5925 4.1641 -1.3590 48 1 6.9447 5.5154 -0.1464 49 1 8.0431 5.2314 1.2719 50 1 5.5469 3.8190 0.9374 51 1 6.9774 3.0840 1.7829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105506596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:11 Heat of formation + Delta-G solvation = 112.256338 kcal Electronic energy + Delta-G solvation = -33753.025302 eV Core-core repulsion = 29659.046322 eV Total energy + Delta-G solvation = -4093.978980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.02844 -42.50517 -39.23294 -38.45884 -36.02755 -35.90505 -34.05910 -33.14268 -32.79599 -31.84942 -29.63294 -28.38800 -27.11566 -26.59928 -25.37613 -24.68737 -23.99450 -23.60709 -22.85430 -21.61568 -20.55589 -19.51601 -18.84436 -18.80724 -18.30914 -17.62438 -17.28701 -16.85469 -16.65826 -16.14663 -15.82735 -15.41348 -15.11202 -15.02183 -14.88054 -14.57858 -14.43957 -14.23288 -14.15659 -14.08622 -13.65763 -13.59751 -13.37526 -13.15800 -12.95275 -12.85816 -12.76929 -12.49432 -12.34861 -12.29583 -12.09323 -11.89143 -11.83981 -11.47518 -11.38820 -11.12307 -11.08254 -10.99686 -10.78847 -10.75586 -10.49494 -10.29734 -9.51041 -8.80013 -7.90955 -5.14993 -0.21311 1.04949 1.43053 1.45207 1.48254 1.51521 1.95353 2.14170 2.56809 3.08818 3.26904 3.41134 3.67826 3.72548 3.87868 3.88449 3.93725 4.04886 4.09394 4.12553 4.15817 4.29305 4.32877 4.35823 4.48683 4.54692 4.61816 4.69066 4.73935 4.78820 4.84258 4.90507 4.92669 4.96401 4.98033 5.01087 5.08860 5.18068 5.20812 5.23448 5.28616 5.32416 5.34731 5.44160 5.53172 5.59977 5.67427 5.74835 5.82535 6.28461 6.33014 6.99016 7.19478 7.39437 8.20656 8.47488 9.31845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008775 B = 0.004661 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3190.178413 B = 6006.268929 C = 6883.351120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.161 4.161 4 C -0.085 4.085 5 C 0.575 3.425 6 O -0.492 6.492 7 N -0.586 5.586 8 C 0.095 3.905 9 C -0.129 4.129 10 C -0.111 4.111 11 C -0.145 4.145 12 C 0.175 3.825 13 H 0.099 0.901 14 C -0.068 4.068 15 C 0.195 3.805 16 N -0.737 5.737 17 C -0.240 4.240 18 H 0.059 0.941 19 C -0.067 4.067 20 N -0.962 5.962 21 Si 0.962 3.038 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.284 1.284 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.097 4.097 28 O 0.103 5.897 29 N -0.375 5.375 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.193 0.807 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.024 0.976 43 H -0.006 1.006 44 H 0.380 0.620 45 H 0.250 0.750 46 H 0.097 0.903 47 H 0.040 0.960 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -8.838 17.455 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.183 4.183 4 C -0.150 4.150 5 C 0.362 3.638 6 O -0.370 6.370 7 N -0.317 5.317 8 C -0.027 4.027 9 C -0.167 4.167 10 C -0.148 4.148 11 C -0.183 4.183 12 C 0.073 3.927 13 H 0.116 0.884 14 C -0.069 4.069 15 C 0.070 3.930 16 N -0.383 5.383 17 C -0.372 4.372 18 H 0.077 0.923 19 C -0.260 4.260 20 N -0.613 5.613 21 Si 0.792 3.208 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.210 1.210 25 C -0.172 4.172 26 C -0.177 4.177 27 C -0.134 4.134 28 O 0.038 5.962 29 N -0.084 5.084 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.210 0.790 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.012 0.988 44 H 0.216 0.784 45 H 0.059 0.941 46 H 0.115 0.885 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.781 -9.459 17.414 21.290 hybrid contribution 0.024 1.146 -1.731 2.076 sum -7.757 -8.313 15.683 19.371 Atomic orbital electron populations 1.20394 0.82779 1.05437 1.04678 1.24177 1.00814 0.87522 1.01609 1.23130 0.89807 1.02556 1.02769 1.24608 0.97886 0.83980 1.08518 1.17039 0.81347 0.86690 0.78741 1.91066 1.85042 1.12159 1.48720 1.47942 1.05699 1.07978 1.70131 1.22396 1.03131 0.77530 0.99666 1.21927 0.96122 1.01624 0.97063 1.21520 0.96927 0.93765 1.02629 1.22179 1.00492 0.96896 0.98742 1.21297 0.83163 0.90128 0.98095 0.88377 1.22013 0.95764 0.92567 0.96547 1.20870 0.92497 0.96184 0.83436 1.43018 1.11538 1.82176 1.01572 1.19460 0.94473 1.36991 0.86324 0.92348 1.25338 0.96630 1.03704 1.00325 1.69777 1.08409 1.56485 1.26582 0.85387 0.77221 0.77936 0.80285 1.20917 1.21752 1.21040 1.23009 0.96669 0.97856 0.99677 1.22821 0.98759 0.96731 0.99406 1.23252 1.00241 0.95112 0.94829 1.85023 1.20839 1.22221 1.68116 1.73657 0.90226 1.25633 1.18866 0.89049 0.89503 0.87637 0.78969 0.87794 0.88252 0.87984 0.94464 0.92472 0.89521 0.91764 0.91774 0.95801 0.98787 0.78448 0.94143 0.88500 0.94090 0.92779 0.90060 0.89066 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.47 71.23 0.75 -0.29 16 2 C 0.02 0.38 7.31 43.55 0.32 0.70 16 3 C -0.16 -3.96 10.92 22.68 0.25 -3.72 16 4 C -0.08 -2.37 7.00 24.39 0.17 -2.20 16 5 C 0.57 17.74 5.89 86.69 0.51 18.26 16 6 O -0.49 -16.79 7.78 -3.97 -0.03 -16.82 16 7 N -0.59 -16.41 2.93 -798.80 -2.34 -18.75 16 8 C 0.09 2.09 6.34 86.36 0.55 2.64 16 9 C -0.13 -3.10 6.11 30.77 0.19 -2.91 16 10 C -0.11 -2.86 5.89 30.73 0.18 -2.68 16 11 C -0.14 -4.85 4.07 30.67 0.12 -4.72 16 12 C 0.18 5.16 2.33 44.98 0.10 5.27 16 13 H 0.10 2.35 8.13 -2.39 -0.02 2.34 16 14 C -0.07 -2.33 0.07 -51.66 0.00 -2.34 16 15 C 0.20 8.70 3.89 86.38 0.34 9.04 16 16 N -0.74 -38.77 3.68 -343.46 -1.27 -40.04 16 17 C -0.24 -14.07 9.99 84.03 0.84 -13.23 16 18 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.96 -59.10 13.06 21.65 0.28 -58.82 16 21 Si 0.96 47.82 29.55 68.60 2.03 49.85 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 25 C -0.13 -4.47 6.50 31.18 0.20 -4.26 16 26 C -0.14 -4.26 7.74 31.18 0.24 -4.01 16 27 C -0.10 -2.89 5.77 31.12 0.18 -2.71 16 28 O 0.10 2.75 7.75 65.79 0.51 3.26 16 29 N -0.38 -9.87 12.04 -48.86 -0.59 -10.46 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 2.25 3.80 -47.54 -0.18 2.07 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.86 5.48 -2.39 -0.01 2.85 16 41 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 42 H 0.02 1.13 4.72 -4.63 -0.02 1.11 16 43 H -0.01 -0.28 7.40 -2.39 -0.02 -0.30 16 44 H 0.38 20.51 4.90 -92.71 -0.45 20.06 16 45 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.10 2.66 8.10 -2.38 -0.02 2.64 16 47 H 0.04 1.68 7.08 -2.39 -0.02 1.67 16 48 H 0.05 1.88 7.73 -2.39 -0.02 1.86 16 49 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.09 3.01 5.52 -54.11 -0.30 2.71 16 51 H 0.08 2.11 8.09 -2.38 -0.02 2.09 16 Total: -1.00 -70.29 380.25 4.03 -66.26 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.03 Total: 36.18 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.40 Total: -10.67 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -3.91 Total: -128.06 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.48 Total: -13.56 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -70.29 4.03 -66.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105506596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.516 kcal (2) G-P(sol) polarization free energy of solvation -70.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds