Wall clock time and date at job start Wed Apr 1 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47352 * 2 1 4 4 C 1.50701 * 109.47476 * 120.00333 * 2 1 3 5 5 O 1.21277 * 120.00316 * 120.45280 * 4 2 1 6 6 N 1.34773 * 119.99650 * 300.44851 * 4 2 1 7 7 C 1.46501 * 120.00032 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47356 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.51083 * 304.89906 * 8 7 6 10 10 C 1.53289 * 109.55277 * 184.77345 * 8 7 6 11 11 N 1.47150 * 108.38494 * 187.74717 * 10 8 7 12 12 C 1.36939 * 120.98505 * 230.55812 * 11 10 8 13 13 H 1.08008 * 119.99824 * 148.74248 * 12 11 10 14 14 C 1.38806 * 119.99918 * 328.74476 * 12 11 10 15 15 N 1.31618 * 120.00016 * 348.78818 * 14 12 11 16 16 Si 1.86802 * 119.99981 * 168.79503 * 14 12 11 17 17 H 1.48498 * 109.47144 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47150 * 119.99744 * 16 14 12 19 19 H 1.48504 * 109.46821 * 239.99767 * 16 14 12 20 20 C 1.47159 * 118.03458 * 50.53545 * 11 10 8 21 21 C 1.53299 * 108.38142 * 309.46735 * 20 11 10 22 22 O 1.42955 * 109.51041 * 65.00183 * 8 7 6 23 23 C 1.50699 * 109.47142 * 240.00274 * 2 1 3 24 24 C 1.38675 * 120.41683 * 351.39895 * 23 2 1 25 25 C 1.38630 * 118.41966 * 180.02562 * 24 23 2 26 26 C 1.38223 * 119.16425 * 359.97438 * 25 24 23 27 27 N 1.31861 * 120.76167 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72431 * 359.71326 * 27 26 25 29 29 H 1.09005 * 109.46942 * 299.99868 * 1 2 3 30 30 H 1.09003 * 109.47311 * 59.99868 * 1 2 3 31 31 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47478 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47020 * 300.00310 * 3 2 1 34 34 H 1.09005 * 109.46989 * 60.00161 * 3 2 1 35 35 H 0.97008 * 120.00196 * 0.02562 * 6 4 2 36 36 H 1.09004 * 109.46650 * 60.00253 * 7 6 4 37 37 H 1.08998 * 109.47034 * 300.00519 * 7 6 4 38 38 H 1.08996 * 109.46827 * 180.09804 * 9 8 7 39 39 H 1.08994 * 109.47415 * 300.10482 * 9 8 7 40 40 H 1.09003 * 109.46662 * 60.09879 * 9 8 7 41 41 H 1.09000 * 109.68431 * 307.47000 * 10 8 7 42 42 H 1.09003 * 109.68144 * 67.98935 * 10 8 7 43 43 H 0.97002 * 119.99932 * 179.97438 * 15 14 12 44 44 H 1.08992 * 109.68188 * 189.74374 * 20 11 10 45 45 H 1.08997 * 109.68281 * 69.19034 * 20 11 10 46 46 H 1.09003 * 109.50738 * 172.22921 * 21 20 11 47 47 H 1.08997 * 109.50955 * 292.32304 * 21 20 11 48 48 H 1.07997 * 120.78794 * 359.97438 * 24 23 2 49 49 H 1.08005 * 120.42094 * 180.02562 * 25 24 23 50 50 H 1.08004 * 119.62112 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.62145 * 180.31009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7364 -1.6917 1.1191 6 7 1.6993 -0.2553 2.4545 7 6 2.1873 -0.9463 3.6506 8 6 1.6676 -0.2319 4.8999 9 6 2.0649 1.2447 4.8467 10 6 2.2725 -0.8801 6.1504 11 7 1.6180 -0.3027 7.3352 12 6 2.3559 0.1945 8.3761 13 1 1.9767 1.0192 8.9614 14 6 3.5912 -0.3615 8.6790 15 7 3.9575 -1.4953 8.1199 16 14 4.7337 0.4996 9.8801 17 1 4.0924 1.7481 10.3650 18 1 5.0072 -0.3966 11.0322 19 1 6.0100 0.8320 9.1976 20 6 0.1471 -0.2749 7.3681 21 6 -0.3542 0.3438 6.0581 22 8 0.2434 -0.3416 4.9550 23 6 2.0323 -0.7103 -1.2305 24 6 1.1515 -1.3932 -2.0557 25 6 1.6584 -2.0325 -3.1765 26 6 3.0152 -1.9681 -3.4327 27 7 3.8233 -1.3083 -2.6262 28 6 3.3753 -0.6835 -1.5547 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1359 0.5293 2.5435 36 1 3.2773 -0.9396 3.6548 37 1 1.8302 -1.9761 3.6464 38 1 1.6959 1.7525 5.7377 39 1 3.1509 1.3275 4.8046 40 1 1.6308 1.7059 3.9596 41 1 2.1022 -1.9564 6.1250 42 1 3.3431 -0.6786 6.1871 43 1 4.8209 -1.8836 8.3313 44 1 -0.1899 0.3279 8.2113 45 1 -0.2372 -1.2902 7.4652 46 1 -1.4386 0.2483 6.0020 47 1 -0.0793 1.3980 6.0249 48 1 0.0959 -1.4269 -1.8301 49 1 1.0015 -2.5734 -3.8415 50 1 3.4181 -2.4638 -4.3036 51 1 4.0669 -0.1492 -0.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108041948.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:04 Heat of formation + Delta-G solvation = -21.978459 kcal Electronic energy + Delta-G solvation = -31792.643581 eV Core-core repulsion = 27692.843744 eV Total energy + Delta-G solvation = -4099.799838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01232 -39.62237 -38.80057 -35.81589 -34.99010 -34.35223 -32.37500 -31.73044 -31.28845 -30.18098 -27.98953 -27.90434 -26.57906 -25.69666 -24.43173 -23.32764 -23.26057 -22.35731 -21.09245 -19.66776 -18.68259 -17.65404 -17.24704 -16.89543 -16.29007 -16.09627 -15.72632 -15.23507 -14.92852 -14.65187 -14.49653 -14.24606 -14.20311 -13.98828 -13.71539 -13.53033 -13.37940 -13.13509 -13.07764 -12.75441 -12.61027 -12.48167 -12.35817 -12.19338 -11.91925 -11.64810 -11.63154 -11.29214 -11.21128 -11.02006 -10.87457 -10.69427 -10.34115 -10.26287 -10.07373 -10.00188 -9.67581 -9.56074 -9.52953 -9.11655 -9.02005 -8.85178 -8.59217 -6.70309 -5.87555 -3.37318 0.96604 1.15257 2.70671 3.23108 3.31056 3.38639 3.40287 3.75147 4.09950 4.21497 4.39883 4.42341 4.47450 4.60844 4.74860 4.80069 4.83860 5.03004 5.12216 5.25626 5.31171 5.31853 5.40544 5.43382 5.45452 5.50429 5.52180 5.62846 5.64014 5.77578 5.80582 5.88048 5.90702 5.96634 5.98917 6.06594 6.10738 6.11522 6.28378 6.41953 6.54778 6.55215 6.65692 6.72317 6.79807 7.03847 7.44310 7.62800 7.68781 7.84866 7.86106 8.31702 8.33630 9.08665 9.69708 10.29448 11.20194 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002521 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.027998 B =11104.453944 C =11847.762425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.141 4.141 4 C 0.518 3.482 5 O -0.535 6.535 6 N -0.713 5.713 7 C 0.139 3.861 8 C 0.078 3.922 9 C -0.161 4.161 10 C 0.162 3.838 11 N -0.590 5.590 12 C -0.256 4.256 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.901 5.901 16 Si 0.904 3.096 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.109 3.891 21 C 0.046 3.954 22 O -0.384 6.384 23 C -0.106 4.106 24 C -0.072 4.072 25 C -0.175 4.175 26 C 0.093 3.907 27 N -0.485 5.485 28 C 0.127 3.873 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.030 0.970 42 H 0.093 0.907 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.153 0.847 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 5.598 -19.859 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.198 4.198 4 C 0.303 3.697 5 O -0.411 6.411 6 N -0.365 5.365 7 C 0.016 3.984 8 C 0.037 3.963 9 C -0.219 4.219 10 C 0.036 3.964 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.084 0.916 14 C -0.192 4.192 15 N -0.545 5.545 16 Si 0.734 3.266 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.018 4.018 21 C -0.032 4.032 22 O -0.304 6.304 23 C -0.108 4.108 24 C -0.097 4.097 25 C -0.195 4.195 26 C -0.064 4.064 27 N -0.193 5.193 28 C -0.031 4.031 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.170 0.830 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.103 4.712 -20.182 21.908 hybrid contribution -0.454 0.681 1.220 1.470 sum -7.557 5.393 -18.962 21.113 Atomic orbital electron populations 1.21959 0.91846 1.03078 1.03261 1.19658 0.97490 0.96162 0.90962 1.21919 1.02065 0.92618 1.03203 1.20241 0.80637 0.84554 0.84268 1.90736 1.37510 1.26248 1.86647 1.45997 1.52779 1.32424 1.05307 1.21362 0.99056 0.96478 0.81551 1.22556 0.82005 0.95390 0.96347 1.22201 1.01963 0.96416 1.01293 1.21247 0.98391 0.94679 0.82109 1.43940 0.98967 1.71626 1.16832 1.19159 1.00288 1.10700 1.08441 0.91607 1.25198 0.99984 0.95465 0.98561 1.69975 1.21435 1.17346 1.45708 0.86204 0.80791 0.78946 0.80703 1.20215 1.21539 1.21450 1.21611 0.86753 0.98196 0.95192 1.23033 0.96301 0.95721 0.88127 1.87817 1.19713 1.75024 1.47813 1.20313 0.95137 0.99474 0.95927 1.21563 1.00382 0.94307 0.93490 1.22095 0.97159 1.01485 0.98764 1.22762 0.90277 0.95484 0.97895 1.67712 1.39371 1.07790 1.04401 1.22524 0.93034 0.94720 0.92777 0.91147 0.91074 0.91543 0.91536 0.91126 0.91244 0.76350 0.89988 0.90879 0.90790 0.91833 0.94065 0.95214 0.88909 0.93414 0.92061 0.95674 0.90243 0.93435 0.84563 0.84885 0.82968 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.08 37.15 0.26 -0.88 16 2 C -0.04 -0.39 0.71 -156.82 -0.11 -0.50 16 3 C -0.14 -1.13 8.08 37.16 0.30 -0.83 16 4 C 0.52 7.23 6.40 -10.99 -0.07 7.16 16 5 O -0.54 -9.73 15.54 5.56 0.09 -9.64 16 6 N -0.71 -9.65 4.98 -60.29 -0.30 -9.95 16 7 C 0.14 2.32 4.85 -4.04 -0.02 2.30 16 8 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 9 C -0.16 -2.61 7.86 37.16 0.29 -2.32 16 10 C 0.16 3.71 4.05 -3.54 -0.01 3.70 16 11 N -0.59 -14.10 2.55 -171.83 -0.44 -14.54 16 12 C -0.26 -6.71 9.62 -15.06 -0.14 -6.86 16 13 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 14 C 0.01 0.20 5.05 -17.43 -0.09 0.11 16 15 N -0.90 -25.45 11.17 55.49 0.62 -24.83 16 16 Si 0.90 21.06 29.57 -169.99 -5.03 16.03 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.11 2.19 6.74 -3.53 -0.02 2.17 16 21 C 0.05 0.77 6.60 37.31 0.25 1.01 16 22 O -0.38 -6.81 10.17 -35.23 -0.36 -7.17 16 23 C -0.11 -1.20 4.23 -104.48 -0.44 -1.64 16 24 C -0.07 -0.70 9.11 -39.28 -0.36 -1.06 16 25 C -0.18 -1.58 10.11 -39.44 -0.40 -1.98 16 26 C 0.09 0.96 11.18 -17.54 -0.20 0.76 16 27 N -0.48 -6.33 10.36 -13.25 -0.14 -6.46 16 28 C 0.13 1.61 9.61 -17.55 -0.17 1.44 16 29 H 0.07 0.52 7.54 -51.93 -0.39 0.13 16 30 H 0.07 0.43 7.93 -51.93 -0.41 0.02 16 31 H 0.07 0.57 7.15 -51.93 -0.37 0.19 16 32 H 0.07 0.57 6.97 -51.93 -0.36 0.20 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 7.59 -51.93 -0.39 0.10 16 35 H 0.40 4.65 5.83 -40.82 -0.24 4.41 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.32 6.11 -51.93 -0.32 1.00 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.35 6.35 -51.93 -0.33 2.02 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.76 6.26 -51.93 -0.32 0.44 16 48 H 0.14 1.03 6.08 -52.49 -0.32 0.71 16 49 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 50 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 51 H 0.15 1.82 7.07 -52.49 -0.37 1.45 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -32.43 396.44 -8.52 -40.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.94 Total: 5.73 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.01 Total: 3.91 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.26 Total: -55.78 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.27 Total: -16.81 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.43 -8.52 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108041948.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.970 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds