Wall clock time and date at job start Wed Apr 1 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47352 * 2 1 4 4 C 1.50701 * 109.47476 * 120.00333 * 2 1 3 5 5 O 1.21277 * 120.00316 * 120.45280 * 4 2 1 6 6 N 1.34773 * 119.99650 * 300.44851 * 4 2 1 7 7 C 1.46501 * 120.00032 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47356 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.51083 * 304.89906 * 8 7 6 10 10 C 1.53289 * 109.55277 * 184.77345 * 8 7 6 11 11 N 1.47150 * 108.38494 * 187.74717 * 10 8 7 12 12 C 1.36939 * 120.98505 * 230.55812 * 11 10 8 13 13 H 1.08008 * 119.99824 * 148.74248 * 12 11 10 14 14 C 1.38806 * 119.99918 * 328.74476 * 12 11 10 15 15 N 1.31618 * 120.00016 * 348.78818 * 14 12 11 16 16 Si 1.86802 * 119.99981 * 168.79503 * 14 12 11 17 17 H 1.48498 * 109.47144 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47150 * 119.99744 * 16 14 12 19 19 H 1.48504 * 109.46821 * 239.99767 * 16 14 12 20 20 C 1.47159 * 118.03458 * 50.53545 * 11 10 8 21 21 C 1.53299 * 108.38142 * 309.46735 * 20 11 10 22 22 O 1.42955 * 109.51041 * 65.00183 * 8 7 6 23 23 C 1.50699 * 109.47142 * 240.00274 * 2 1 3 24 24 C 1.38675 * 120.41683 * 351.39895 * 23 2 1 25 25 C 1.38630 * 118.41966 * 180.02562 * 24 23 2 26 26 C 1.38223 * 119.16425 * 359.97438 * 25 24 23 27 27 N 1.31861 * 120.76167 * 359.97438 * 26 25 24 28 28 C 1.31881 * 121.72431 * 359.71326 * 27 26 25 29 29 H 1.09005 * 109.46942 * 299.99868 * 1 2 3 30 30 H 1.09003 * 109.47311 * 59.99868 * 1 2 3 31 31 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47478 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47020 * 300.00310 * 3 2 1 34 34 H 1.09005 * 109.46989 * 60.00161 * 3 2 1 35 35 H 0.97008 * 120.00196 * 0.02562 * 6 4 2 36 36 H 1.09004 * 109.46650 * 60.00253 * 7 6 4 37 37 H 1.08998 * 109.47034 * 300.00519 * 7 6 4 38 38 H 1.08996 * 109.46827 * 180.09804 * 9 8 7 39 39 H 1.08994 * 109.47415 * 300.10482 * 9 8 7 40 40 H 1.09003 * 109.46662 * 60.09879 * 9 8 7 41 41 H 1.09000 * 109.68431 * 307.47000 * 10 8 7 42 42 H 1.09003 * 109.68144 * 67.98935 * 10 8 7 43 43 H 0.97002 * 119.99932 * 179.97438 * 15 14 12 44 44 H 1.08992 * 109.68188 * 189.74374 * 20 11 10 45 45 H 1.08997 * 109.68281 * 69.19034 * 20 11 10 46 46 H 1.09003 * 109.50738 * 172.22921 * 21 20 11 47 47 H 1.08997 * 109.50955 * 292.32304 * 21 20 11 48 48 H 1.07997 * 120.78794 * 359.97438 * 24 23 2 49 49 H 1.08005 * 120.42094 * 180.02562 * 25 24 23 50 50 H 1.08004 * 119.62112 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.62145 * 180.31009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7364 -1.6917 1.1191 6 7 1.6993 -0.2553 2.4545 7 6 2.1873 -0.9463 3.6506 8 6 1.6676 -0.2319 4.8999 9 6 2.0649 1.2447 4.8467 10 6 2.2725 -0.8801 6.1504 11 7 1.6180 -0.3027 7.3352 12 6 2.3559 0.1945 8.3761 13 1 1.9767 1.0192 8.9614 14 6 3.5912 -0.3615 8.6790 15 7 3.9575 -1.4953 8.1199 16 14 4.7337 0.4996 9.8801 17 1 4.0924 1.7481 10.3650 18 1 5.0072 -0.3966 11.0322 19 1 6.0100 0.8320 9.1976 20 6 0.1471 -0.2749 7.3681 21 6 -0.3542 0.3438 6.0581 22 8 0.2434 -0.3416 4.9550 23 6 2.0323 -0.7103 -1.2305 24 6 1.1515 -1.3932 -2.0557 25 6 1.6584 -2.0325 -3.1765 26 6 3.0152 -1.9681 -3.4327 27 7 3.8233 -1.3083 -2.6262 28 6 3.3753 -0.6835 -1.5547 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1359 0.5293 2.5435 36 1 3.2773 -0.9396 3.6548 37 1 1.8302 -1.9761 3.6464 38 1 1.6959 1.7525 5.7377 39 1 3.1509 1.3275 4.8046 40 1 1.6308 1.7059 3.9596 41 1 2.1022 -1.9564 6.1250 42 1 3.3431 -0.6786 6.1871 43 1 4.8209 -1.8836 8.3313 44 1 -0.1899 0.3279 8.2113 45 1 -0.2372 -1.2902 7.4652 46 1 -1.4386 0.2483 6.0020 47 1 -0.0793 1.3980 6.0249 48 1 0.0959 -1.4269 -1.8301 49 1 1.0015 -2.5734 -3.8415 50 1 3.4181 -2.4638 -4.3036 51 1 4.0669 -0.1492 -0.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108041948.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:03 Heat of formation + Delta-G solvation = -43.536406 kcal Electronic energy + Delta-G solvation = -31793.578404 eV Core-core repulsion = 27692.843744 eV Total energy + Delta-G solvation = -4100.734660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93487 -40.86275 -40.06933 -36.72061 -36.52562 -35.94097 -33.30459 -33.20553 -32.92869 -31.00771 -29.56469 -28.52010 -28.08488 -27.33362 -25.26881 -24.97046 -24.11238 -23.51662 -22.56041 -20.78353 -20.16656 -18.96898 -18.39745 -18.04988 -17.46769 -17.12477 -17.00801 -16.86310 -16.13296 -16.04570 -15.68015 -15.60133 -15.40430 -15.17308 -14.94043 -14.73423 -14.61391 -14.37322 -14.14391 -14.09694 -13.60794 -13.41738 -13.25248 -13.17385 -13.11000 -12.91690 -12.83110 -12.82212 -12.54792 -12.43357 -12.32110 -12.11588 -12.00351 -11.95080 -11.86448 -11.13783 -10.90225 -10.74964 -10.60975 -10.52366 -10.35859 -10.11947 -9.89503 -8.65512 -7.90036 -5.43353 0.17418 0.38006 1.44382 1.46460 1.56383 1.61175 2.12360 2.46795 2.79426 2.91972 3.26136 3.33944 3.50869 3.62710 3.72613 3.84724 3.94368 4.00711 4.03797 4.08277 4.10301 4.11423 4.36996 4.43578 4.47464 4.56419 4.62109 4.64800 4.72695 4.73002 4.78369 4.80153 4.82997 4.86026 4.94186 4.97783 5.05526 5.13369 5.14914 5.20509 5.21461 5.27931 5.36899 5.37631 5.38283 5.54431 5.61238 5.80450 6.31866 6.38370 6.54087 7.05363 7.07729 7.22690 7.75074 8.31308 9.15171 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002521 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.027998 B =11104.453944 C =11847.762425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.140 4.140 4 C 0.517 3.483 5 O -0.583 6.583 6 N -0.700 5.700 7 C 0.150 3.850 8 C 0.095 3.905 9 C -0.153 4.153 10 C 0.170 3.830 11 N -0.606 5.606 12 C -0.258 4.258 13 H 0.073 0.927 14 C -0.048 4.048 15 N -0.937 5.937 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.295 1.295 19 H -0.291 1.291 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.384 6.384 23 C -0.117 4.117 24 C -0.077 4.077 25 C -0.169 4.169 26 C 0.078 3.922 27 N -0.518 5.518 28 C 0.102 3.898 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.414 0.586 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.080 0.920 41 H -0.010 1.010 42 H 0.061 0.939 43 H 0.250 0.750 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.118 0.882 47 H 0.063 0.937 48 H 0.163 0.837 49 H 0.168 0.832 50 H 0.177 0.823 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 7.844 -21.480 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.197 4.197 4 C 0.304 3.696 5 O -0.463 6.463 6 N -0.352 5.352 7 C 0.025 3.975 8 C 0.054 3.946 9 C -0.210 4.210 10 C 0.044 3.956 11 N -0.331 5.331 12 C -0.388 4.388 13 H 0.090 0.910 14 C -0.244 4.244 15 N -0.583 5.583 16 Si 0.795 3.205 17 H -0.185 1.185 18 H -0.222 1.222 19 H -0.218 1.218 20 C -0.024 4.024 21 C -0.024 4.024 22 O -0.303 6.303 23 C -0.120 4.120 24 C -0.102 4.102 25 C -0.188 4.188 26 C -0.078 4.078 27 N -0.227 5.227 28 C -0.055 4.055 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.008 0.992 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.136 0.864 47 H 0.081 0.919 48 H 0.180 0.820 49 H 0.186 0.814 50 H 0.194 0.806 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.910 7.011 -21.806 24.957 hybrid contribution 0.344 -0.104 1.714 1.752 sum -9.566 6.907 -20.091 23.300 Atomic orbital electron populations 1.22018 0.89534 1.03322 1.05140 1.19658 0.99087 0.96480 0.88030 1.21965 1.01488 0.91376 1.04906 1.21040 0.79474 0.83920 0.85190 1.90719 1.39617 1.28603 1.87316 1.45788 1.52716 1.32470 1.04269 1.20982 0.98184 0.95661 0.82699 1.22156 0.82099 0.96269 0.94057 1.22110 1.01683 0.94630 1.02588 1.20994 0.97128 0.92895 0.84623 1.44191 1.00679 1.71417 1.16785 1.19506 1.00448 1.10403 1.08466 0.90971 1.25952 1.01689 0.96172 1.00569 1.70155 1.21513 1.19069 1.47539 0.85207 0.78692 0.78263 0.78304 1.18542 1.22203 1.21791 1.21839 0.84449 0.98008 0.98133 1.23107 0.98125 0.95832 0.85349 1.87828 1.18960 1.75494 1.48066 1.20471 0.94814 1.00063 0.96632 1.21961 1.01493 0.93493 0.93291 1.22494 0.96989 1.00556 0.98761 1.23281 0.91124 0.95199 0.98237 1.67656 1.40846 1.08959 1.05228 1.22521 0.93908 0.95814 0.93247 0.90100 0.88414 0.92116 0.92686 0.89130 0.89768 0.74742 0.91417 0.93010 0.91924 0.92675 0.90085 0.99224 0.92041 0.94120 0.90988 0.97193 0.86412 0.91932 0.82002 0.81447 0.80619 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.08 71.98 0.51 -1.25 16 2 C -0.03 -0.53 0.71 -53.68 -0.04 -0.56 16 3 C -0.14 -1.93 8.08 71.98 0.58 -1.35 16 4 C 0.52 14.19 6.40 87.66 0.56 14.75 16 5 O -0.58 -21.90 15.54 -3.02 -0.05 -21.95 16 6 N -0.70 -18.17 4.98 -463.05 -2.30 -20.47 16 7 C 0.15 5.12 4.85 86.38 0.42 5.54 16 8 C 0.10 3.40 0.78 -10.69 -0.01 3.39 16 9 C -0.15 -4.69 7.86 71.98 0.57 -4.13 16 10 C 0.17 8.13 4.05 86.35 0.35 8.48 16 11 N -0.61 -29.40 2.55 -697.54 -1.78 -31.18 16 12 C -0.26 -13.63 9.62 84.03 0.81 -12.82 16 13 H 0.07 3.66 7.85 -2.91 -0.02 3.64 16 14 C -0.05 -2.64 5.05 84.86 0.43 -2.21 16 15 N -0.94 -55.33 11.17 21.65 0.24 -55.09 16 16 Si 0.97 44.02 29.57 68.60 2.03 46.05 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 C 0.10 3.98 6.74 86.35 0.58 4.56 16 21 C 0.05 1.61 6.60 72.08 0.48 2.09 16 22 O -0.38 -12.89 10.17 -148.98 -1.52 -14.40 16 23 C -0.12 -2.53 4.23 -19.77 -0.08 -2.61 16 24 C -0.08 -1.31 9.11 22.47 0.20 -1.11 16 25 C -0.17 -2.63 10.11 22.36 0.23 -2.40 16 26 C 0.08 1.53 11.18 84.68 0.95 2.48 16 27 N -0.52 -13.71 10.36 -195.84 -2.03 -15.74 16 28 C 0.10 2.63 9.61 84.67 0.81 3.45 16 29 H 0.08 0.85 7.54 -2.38 -0.02 0.83 16 30 H 0.10 0.72 7.93 -2.39 -0.02 0.70 16 31 H 0.06 0.84 7.15 -2.38 -0.02 0.82 16 32 H 0.05 0.89 6.97 -2.39 -0.02 0.88 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.90 7.59 -2.38 -0.02 0.88 16 35 H 0.41 8.38 5.83 -92.70 -0.54 7.84 16 36 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 2.10 6.11 -2.39 -0.01 2.09 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.83 6.59 -2.39 -0.02 1.82 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.06 3.30 6.35 -2.39 -0.02 3.29 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.07 2.64 7.96 -2.39 -0.02 2.63 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 46 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.06 1.76 6.26 -2.39 -0.01 1.75 16 48 H 0.16 1.84 6.08 -2.91 -0.02 1.83 16 49 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 50 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.14 3.65 7.07 -2.91 -0.02 3.63 16 Total: -1.00 -75.14 396.44 2.34 -72.80 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.40 Total: 23.68 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.34 Total: 16.30 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.87 Total: -122.48 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.56 Total: -36.35 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.14 2.34 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108041948.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.264 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds