Wall clock time and date at job start Wed Apr 1 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.51311 * 2 1 4 4 N 1.46502 * 109.47045 * 304.99879 * 3 2 1 5 5 C 1.34774 * 120.00023 * 180.02562 * 4 3 2 6 6 O 1.21693 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.46675 * 119.99867 * 180.02562 * 5 4 3 8 8 C 1.38057 * 126.20540 * 180.02562 * 7 5 4 9 9 C 1.39239 * 106.97824 * 179.97438 * 8 7 5 10 10 C 1.35965 * 108.04167 * 0.06371 * 9 8 7 11 11 N 1.35118 * 108.76247 * 359.89291 * 10 9 8 12 12 H 0.96998 * 125.68457 * 180.13283 * 11 10 9 13 13 C 1.51024 * 123.85004 * 179.87480 * 10 9 8 14 14 C 1.53315 * 108.44726 * 343.32491 * 13 10 9 15 15 C 1.53194 * 109.48602 * 50.14846 * 14 13 10 16 16 C 1.50841 * 127.70490 * 180.16478 * 9 8 7 17 17 C 1.53296 * 109.51259 * 120.09754 * 2 1 3 18 18 N 1.47156 * 108.38301 * 67.67673 * 17 2 1 19 19 C 1.36935 * 120.98230 * 230.51580 * 18 17 2 20 20 H 1.08001 * 120.00523 * 153.31932 * 19 18 17 21 21 C 1.38817 * 120.00023 * 333.31866 * 19 18 17 22 22 N 1.31621 * 119.99913 * 343.55797 * 21 19 18 23 23 Si 1.86805 * 120.00147 * 163.55342 * 21 19 18 24 24 H 1.48492 * 109.46685 * 60.00382 * 23 21 19 25 25 H 1.48500 * 109.46871 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47103 * 300.00569 * 23 21 19 27 27 C 1.47153 * 118.03685 * 50.53304 * 18 17 2 28 28 C 1.53298 * 108.38373 * 309.46667 * 27 18 17 29 29 O 1.42958 * 109.26325 * 52.27896 * 28 27 18 30 30 H 1.09000 * 109.47099 * 60.00581 * 1 2 3 31 31 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47523 * 300.00187 * 1 2 3 33 33 H 1.09004 * 109.47280 * 184.99743 * 3 2 1 34 34 H 1.08999 * 109.47300 * 64.99744 * 3 2 1 35 35 H 0.97002 * 119.99948 * 359.97438 * 4 3 2 36 36 H 1.08008 * 126.50693 * 0.02562 * 8 7 5 37 37 H 1.08999 * 109.67237 * 103.07500 * 13 10 9 38 38 H 1.09003 * 109.67503 * 223.57350 * 13 10 9 39 39 H 1.08995 * 109.46341 * 170.20018 * 14 13 10 40 40 H 1.09003 * 109.45533 * 290.16587 * 14 13 10 41 41 H 1.08995 * 109.45760 * 169.61526 * 15 14 13 42 42 H 1.08999 * 109.47150 * 49.62456 * 15 14 13 43 43 H 1.09002 * 109.68197 * 283.15242 * 16 9 8 44 44 H 1.08995 * 109.68041 * 43.66652 * 16 9 8 45 45 H 1.09002 * 109.68288 * 187.39771 * 17 2 1 46 46 H 1.08999 * 109.68243 * 307.91779 * 17 2 1 47 47 H 0.96995 * 119.99957 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.68138 * 69.19364 * 27 18 17 49 49 H 1.09004 * 109.68109 * 189.74438 * 27 18 17 50 50 H 1.09005 * 109.50840 * 172.22320 * 28 27 18 51 51 H 1.09001 * 109.51027 * 292.32666 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1670 -1.1315 5 6 1.7673 3.4630 -1.3335 6 8 2.5315 4.0312 -0.5758 7 6 1.1825 4.1889 -2.4660 8 6 1.4099 5.5110 -2.7922 9 6 0.6588 5.7834 -3.9325 10 6 -0.0050 4.6489 -4.2805 11 7 0.3070 3.6747 -3.3977 12 1 -0.0290 2.7650 -3.4169 13 6 -0.9300 4.5467 -5.4699 14 6 -1.3019 5.9648 -5.9186 15 6 -0.0286 6.8029 -6.0713 16 6 0.5659 7.0865 -4.6865 17 6 2.0420 -0.7246 1.2501 18 7 1.6971 -2.1504 1.1340 19 6 1.0627 -2.8075 2.1543 20 1 0.4443 -3.6669 1.9412 21 6 1.2144 -2.3690 3.4626 22 7 2.1964 -1.5490 3.7722 23 14 0.0250 -2.9427 4.7839 24 1 0.0822 -4.4225 4.8926 25 1 0.4009 -2.3353 6.0858 26 1 -1.3539 -2.5258 4.4234 27 6 2.0543 -2.8494 -0.1107 28 6 1.5417 -2.0212 -1.2944 29 8 2.0076 -0.6758 -1.1657 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1274 1.4427 -0.0895 34 1 1.7530 1.9297 0.9313 35 1 0.8486 1.7140 -1.7356 36 1 2.0497 6.2023 -2.2637 37 1 -0.4256 4.0249 -6.2832 38 1 -1.8315 4.0027 -5.1881 39 1 -1.8239 5.9182 -6.8743 40 1 -1.9509 6.4232 -5.1724 41 1 -0.2709 7.7451 -6.5628 42 1 0.6968 6.2553 -6.6731 43 1 -0.0789 7.7788 -4.1450 44 1 1.5602 7.5196 -4.7949 45 1 3.1240 -0.6133 1.3216 46 1 1.5701 -0.3033 2.1378 47 1 2.3022 -1.2424 4.6863 48 1 3.1374 -2.9521 -0.1761 49 1 1.5901 -3.8355 -0.1241 50 1 1.9142 -2.4480 -2.2257 51 1 0.4517 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108329927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:15 Heat of formation + Delta-G solvation = -26.109476 kcal Electronic energy + Delta-G solvation = -31153.667278 eV Core-core repulsion = 27053.688306 eV Total energy + Delta-G solvation = -4099.978972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.73608 -39.60413 -38.61279 -36.53179 -35.01564 -34.38863 -32.42317 -31.82232 -31.29911 -29.53098 -28.90404 -28.01016 -26.60926 -25.76356 -23.93564 -23.28357 -22.49517 -21.67228 -21.06735 -20.06894 -18.92071 -18.72668 -18.30987 -17.07352 -16.10672 -15.96006 -15.55196 -15.45602 -15.04447 -14.80721 -14.44180 -14.23871 -14.13760 -13.97052 -13.88436 -13.68491 -13.54875 -13.32529 -13.11858 -12.81152 -12.71528 -12.54587 -12.52148 -12.10972 -11.90453 -11.66528 -11.24936 -11.18449 -11.06161 -11.03349 -10.85602 -10.80193 -10.72571 -10.36711 -10.31610 -10.10648 -9.93739 -9.59859 -9.10954 -8.97884 -8.88816 -8.57785 -8.05295 -6.78124 -5.88266 -3.32508 1.41808 2.52977 2.86612 3.25776 3.32306 3.38281 3.38904 3.47074 4.18653 4.36018 4.39998 4.51308 4.55047 4.83765 4.86431 5.04271 5.09762 5.19054 5.24510 5.26663 5.29723 5.35035 5.41404 5.45806 5.54510 5.58595 5.63446 5.69338 5.82233 5.84297 5.87538 5.96190 5.99792 6.01948 6.05955 6.08152 6.10449 6.25060 6.37279 6.50193 6.60810 6.68121 6.69645 6.76726 6.83149 7.02200 7.21748 7.42109 7.61736 7.66567 7.81917 8.28215 8.29829 9.06746 9.69615 10.26969 11.19748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002234 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.941074 B =12528.659912 C =12877.510460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.140 3.860 4 N -0.719 5.719 5 C 0.584 3.416 6 O -0.533 6.533 7 C -0.050 4.050 8 C -0.100 4.100 9 C -0.176 4.176 10 C 0.047 3.953 11 N -0.531 5.531 12 H 0.414 0.586 13 C -0.053 4.053 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.046 4.046 17 C 0.160 3.840 18 N -0.590 5.590 19 C -0.257 4.257 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.109 3.891 28 C 0.046 3.954 29 O -0.385 6.385 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.394 0.606 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.097 0.903 47 H 0.257 0.743 48 H 0.026 0.974 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 12.911 -20.202 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.370 5.370 5 C 0.371 3.629 6 O -0.409 6.409 7 C -0.162 4.162 8 C -0.127 4.127 9 C -0.183 4.183 10 C -0.071 4.071 11 N -0.126 5.126 12 H 0.251 0.749 13 C -0.091 4.091 14 C -0.150 4.150 15 C -0.157 4.157 16 C -0.084 4.084 17 C 0.033 3.967 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.017 4.017 28 C -0.032 4.032 29 O -0.304 6.304 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.229 0.771 36 H 0.164 0.836 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.080 0.920 50 H 0.098 0.902 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.621 13.256 -19.519 24.506 hybrid contribution -1.116 -1.322 0.727 1.877 sum -7.737 11.933 -18.792 23.566 Atomic orbital electron populations 1.22198 0.95871 1.03248 1.00511 1.22561 0.93464 0.90666 0.89645 1.21384 0.98926 0.89348 0.88659 1.45919 1.49036 1.10781 1.31247 1.17062 0.81094 0.81363 0.83375 1.90844 1.35959 1.67940 1.46200 1.20504 1.03650 0.95554 0.96527 1.20989 1.01221 0.93434 0.97023 1.19247 1.03765 0.95644 0.99601 1.20430 1.02670 0.88863 0.95185 1.41735 1.36471 1.12114 1.22299 0.74866 1.20306 0.96810 0.98761 0.93262 1.21526 0.97983 0.94076 1.01444 1.21611 0.97082 0.99886 0.97142 1.20044 1.01052 0.93265 0.94020 1.21288 0.97933 0.83942 0.93495 1.43981 1.68629 1.04881 1.13882 1.19103 1.21581 1.12601 0.85311 0.91483 1.25063 0.97220 1.00023 0.97148 1.69995 1.29110 1.36664 1.18702 0.86351 0.80862 0.78384 0.81067 1.20823 1.21492 1.20994 1.21596 0.97592 0.95203 0.87339 1.23040 0.98230 0.83141 0.98806 1.87824 1.73040 1.25774 1.43784 0.94402 0.90682 0.91736 0.90552 0.89732 0.77138 0.83556 0.90262 0.90714 0.91195 0.91365 0.91589 0.91713 0.91294 0.91083 0.95130 0.88517 0.93298 0.95607 0.92023 0.90209 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.86 37.16 0.29 -2.38 16 2 C 0.08 1.42 0.78 -90.47 -0.07 1.35 16 3 C 0.14 2.42 4.85 -4.04 -0.02 2.40 16 4 N -0.72 -10.58 5.19 -61.62 -0.32 -10.90 16 5 C 0.58 9.31 7.79 -12.86 -0.10 9.21 16 6 O -0.53 -10.40 16.88 5.20 0.09 -10.31 16 7 C -0.05 -0.66 7.06 -81.84 -0.58 -1.24 16 8 C -0.10 -1.29 10.62 -39.28 -0.42 -1.71 16 9 C -0.18 -1.88 5.91 -105.00 -0.62 -2.50 16 10 C 0.05 0.45 7.02 -81.80 -0.57 -0.13 16 11 N -0.53 -5.41 5.98 -5.49 -0.03 -5.45 16 12 H 0.41 3.25 8.19 -40.82 -0.33 2.91 16 13 C -0.05 -0.35 6.30 -27.56 -0.17 -0.52 16 14 C -0.11 -0.64 5.90 -26.47 -0.16 -0.79 16 15 C -0.12 -0.74 5.90 -26.45 -0.16 -0.89 16 16 C -0.05 -0.37 6.28 -27.63 -0.17 -0.54 16 17 C 0.16 3.69 4.11 -3.53 -0.01 3.67 16 18 N -0.59 -14.18 2.57 -171.82 -0.44 -14.62 16 19 C -0.26 -6.75 9.65 -15.06 -0.15 -6.89 16 20 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 21 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 22 N -0.90 -25.49 11.14 55.49 0.62 -24.87 16 23 Si 0.90 21.12 29.59 -169.99 -5.03 16.09 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.11 2.21 6.74 -3.53 -0.02 2.18 16 28 C 0.05 0.77 6.60 37.31 0.25 1.02 16 29 O -0.38 -6.96 10.17 -35.23 -0.36 -7.32 16 30 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 31 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.39 4.93 6.12 -40.82 -0.25 4.68 16 36 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.42 8.11 -51.93 -0.42 -0.01 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 2.46 6.16 -51.93 -0.32 2.14 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 51 H 0.05 0.76 6.26 -51.93 -0.33 0.44 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -31.82 396.71 -10.46 -42.28 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.19 Total: 6.84 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.77 Total: 2.27 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.18 Total: -55.83 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.27 Total: -17.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.82 -10.46 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108329927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.169 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds