Wall clock time and date at job start Wed Apr 1 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.51311 * 2 1 4 4 N 1.46502 * 109.47045 * 304.99879 * 3 2 1 5 5 C 1.34774 * 120.00023 * 180.02562 * 4 3 2 6 6 O 1.21693 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.46675 * 119.99867 * 180.02562 * 5 4 3 8 8 C 1.38057 * 126.20540 * 180.02562 * 7 5 4 9 9 C 1.39239 * 106.97824 * 179.97438 * 8 7 5 10 10 C 1.35965 * 108.04167 * 0.06371 * 9 8 7 11 11 N 1.35118 * 108.76247 * 359.89291 * 10 9 8 12 12 H 0.96998 * 125.68457 * 180.13283 * 11 10 9 13 13 C 1.51024 * 123.85004 * 179.87480 * 10 9 8 14 14 C 1.53315 * 108.44726 * 343.32491 * 13 10 9 15 15 C 1.53194 * 109.48602 * 50.14846 * 14 13 10 16 16 C 1.50841 * 127.70490 * 180.16478 * 9 8 7 17 17 C 1.53296 * 109.51259 * 120.09754 * 2 1 3 18 18 N 1.47156 * 108.38301 * 67.67673 * 17 2 1 19 19 C 1.36935 * 120.98230 * 230.51580 * 18 17 2 20 20 H 1.08001 * 120.00523 * 153.31932 * 19 18 17 21 21 C 1.38817 * 120.00023 * 333.31866 * 19 18 17 22 22 N 1.31621 * 119.99913 * 343.55797 * 21 19 18 23 23 Si 1.86805 * 120.00147 * 163.55342 * 21 19 18 24 24 H 1.48492 * 109.46685 * 60.00382 * 23 21 19 25 25 H 1.48500 * 109.46871 * 180.02562 * 23 21 19 26 26 H 1.48491 * 109.47103 * 300.00569 * 23 21 19 27 27 C 1.47153 * 118.03685 * 50.53304 * 18 17 2 28 28 C 1.53298 * 108.38373 * 309.46667 * 27 18 17 29 29 O 1.42958 * 109.26325 * 52.27896 * 28 27 18 30 30 H 1.09000 * 109.47099 * 60.00581 * 1 2 3 31 31 H 1.09002 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47523 * 300.00187 * 1 2 3 33 33 H 1.09004 * 109.47280 * 184.99743 * 3 2 1 34 34 H 1.08999 * 109.47300 * 64.99744 * 3 2 1 35 35 H 0.97002 * 119.99948 * 359.97438 * 4 3 2 36 36 H 1.08008 * 126.50693 * 0.02562 * 8 7 5 37 37 H 1.08999 * 109.67237 * 103.07500 * 13 10 9 38 38 H 1.09003 * 109.67503 * 223.57350 * 13 10 9 39 39 H 1.08995 * 109.46341 * 170.20018 * 14 13 10 40 40 H 1.09003 * 109.45533 * 290.16587 * 14 13 10 41 41 H 1.08995 * 109.45760 * 169.61526 * 15 14 13 42 42 H 1.08999 * 109.47150 * 49.62456 * 15 14 13 43 43 H 1.09002 * 109.68197 * 283.15242 * 16 9 8 44 44 H 1.08995 * 109.68041 * 43.66652 * 16 9 8 45 45 H 1.09002 * 109.68288 * 187.39771 * 17 2 1 46 46 H 1.08999 * 109.68243 * 307.91779 * 17 2 1 47 47 H 0.96995 * 119.99957 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.68138 * 69.19364 * 27 18 17 49 49 H 1.09004 * 109.68109 * 189.74438 * 27 18 17 50 50 H 1.09005 * 109.50840 * 172.22320 * 28 27 18 51 51 H 1.09001 * 109.51027 * 292.32666 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1670 -1.1315 5 6 1.7673 3.4630 -1.3335 6 8 2.5315 4.0312 -0.5758 7 6 1.1825 4.1889 -2.4660 8 6 1.4099 5.5110 -2.7922 9 6 0.6588 5.7834 -3.9325 10 6 -0.0050 4.6489 -4.2805 11 7 0.3070 3.6747 -3.3977 12 1 -0.0290 2.7650 -3.4169 13 6 -0.9300 4.5467 -5.4699 14 6 -1.3019 5.9648 -5.9186 15 6 -0.0286 6.8029 -6.0713 16 6 0.5659 7.0865 -4.6865 17 6 2.0420 -0.7246 1.2501 18 7 1.6971 -2.1504 1.1340 19 6 1.0627 -2.8075 2.1543 20 1 0.4443 -3.6669 1.9412 21 6 1.2144 -2.3690 3.4626 22 7 2.1964 -1.5490 3.7722 23 14 0.0250 -2.9427 4.7839 24 1 0.0822 -4.4225 4.8926 25 1 0.4009 -2.3353 6.0858 26 1 -1.3539 -2.5258 4.4234 27 6 2.0543 -2.8494 -0.1107 28 6 1.5417 -2.0212 -1.2944 29 8 2.0076 -0.6758 -1.1657 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1274 1.4427 -0.0895 34 1 1.7530 1.9297 0.9313 35 1 0.8486 1.7140 -1.7356 36 1 2.0497 6.2023 -2.2637 37 1 -0.4256 4.0249 -6.2832 38 1 -1.8315 4.0027 -5.1881 39 1 -1.8239 5.9182 -6.8743 40 1 -1.9509 6.4232 -5.1724 41 1 -0.2709 7.7451 -6.5628 42 1 0.6968 6.2553 -6.6731 43 1 -0.0789 7.7788 -4.1450 44 1 1.5602 7.5196 -4.7949 45 1 3.1240 -0.6133 1.3216 46 1 1.5701 -0.3033 2.1378 47 1 2.3022 -1.2424 4.6863 48 1 3.1374 -2.9521 -0.1761 49 1 1.5901 -3.8355 -0.1241 50 1 1.9142 -2.4480 -2.2257 51 1 0.4517 -2.0301 -1.3001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108329927.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:14 Heat of formation + Delta-G solvation = -46.458041 kcal Electronic energy + Delta-G solvation = -31154.549658 eV Core-core repulsion = 27053.688306 eV Total energy + Delta-G solvation = -4100.861352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60866 -41.02859 -39.99193 -37.14064 -36.60992 -36.01856 -33.37989 -33.21795 -33.04541 -30.30228 -29.76009 -29.57596 -28.11552 -27.34657 -25.06017 -24.78136 -23.38894 -22.83204 -22.18203 -21.20174 -20.37351 -19.48405 -19.42099 -18.90870 -17.48969 -17.11324 -16.88264 -16.80223 -16.34454 -16.05206 -15.83209 -15.59845 -15.35761 -15.24416 -14.85383 -14.71718 -14.64667 -14.55245 -14.41835 -14.00616 -13.92517 -13.49732 -13.47256 -13.26510 -13.20652 -12.96370 -12.78032 -12.63762 -12.56252 -12.46940 -12.20605 -11.99807 -11.88577 -11.63497 -11.53339 -11.37665 -11.32181 -11.12230 -10.78138 -10.52484 -10.30890 -9.79580 -8.91009 -8.73552 -7.91209 -5.38747 0.39865 1.45242 1.47165 1.54145 1.67526 1.94366 2.10814 2.31324 2.46753 2.74224 3.23371 3.46272 3.74234 3.81036 3.91401 3.97242 4.00015 4.04844 4.11159 4.20448 4.38646 4.41095 4.42543 4.51161 4.54035 4.59912 4.67836 4.70490 4.72740 4.74954 4.76632 4.90289 4.99761 5.00867 5.08070 5.11554 5.15376 5.17251 5.20711 5.26332 5.31323 5.35556 5.39850 5.50890 5.56138 5.59759 5.85126 5.92938 6.27124 6.33374 6.38252 6.54936 7.04848 7.06339 7.74282 8.28551 9.14395 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002234 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.941074 B =12528.659912 C =12877.510460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 C 0.150 3.850 4 N -0.704 5.704 5 C 0.585 3.415 6 O -0.579 6.579 7 C -0.077 4.077 8 C -0.113 4.113 9 C -0.192 4.192 10 C 0.065 3.935 11 N -0.519 5.519 12 H 0.427 0.573 13 C -0.054 4.054 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.048 4.048 17 C 0.167 3.833 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.075 0.925 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.275 1.275 27 C 0.101 3.899 28 C 0.052 3.948 29 O -0.386 6.386 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.069 0.931 45 H -0.007 1.007 46 H 0.067 0.933 47 H 0.250 0.750 48 H 0.011 0.989 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 12.680 -23.675 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 C 0.025 3.975 4 N -0.356 5.356 5 C 0.374 3.626 6 O -0.459 6.459 7 C -0.190 4.190 8 C -0.141 4.141 9 C -0.198 4.198 10 C -0.055 4.055 11 N -0.116 5.116 12 H 0.266 0.734 13 C -0.091 4.091 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.086 4.086 17 C 0.040 3.960 18 N -0.330 5.330 19 C -0.390 4.390 20 H 0.092 0.908 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.200 1.200 25 H -0.224 1.224 26 H -0.201 1.201 27 C -0.024 4.024 28 C -0.025 4.025 29 O -0.306 6.306 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.011 0.989 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.092 0.908 50 H 0.136 0.864 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.513 12.977 -23.048 28.109 hybrid contribution -0.186 -1.261 1.710 2.133 sum -9.698 11.716 -21.338 26.203 Atomic orbital electron populations 1.22105 0.93870 1.03020 1.01996 1.22168 0.94686 0.90271 0.87512 1.21066 0.97943 0.89181 0.89314 1.45655 1.48921 1.10435 1.30590 1.17397 0.80373 0.81289 0.83529 1.90813 1.38165 1.68877 1.48084 1.20027 1.06004 0.95717 0.97210 1.21162 1.01510 0.93412 0.97972 1.19595 1.03640 0.97401 0.99165 1.21078 1.01418 0.87955 0.95001 1.41679 1.35523 1.12890 1.21475 0.73390 1.20517 0.96794 0.99835 0.91995 1.21562 0.97660 0.93263 1.02466 1.21614 0.97258 1.00900 0.95713 1.20129 1.01388 0.92020 0.95040 1.21045 0.95469 0.84472 0.94967 1.44232 1.68633 1.05417 1.14736 1.19470 1.21106 1.12429 0.85983 0.90779 1.25826 0.98735 1.00718 0.99282 1.70173 1.31036 1.38463 1.18561 0.85344 0.79063 0.78040 0.78043 1.20042 1.22441 1.20051 1.21826 0.97019 0.96403 0.87167 1.23123 0.99183 0.81671 0.98510 1.87836 1.73415 1.26509 1.42813 0.90583 0.91661 0.92595 0.92426 0.90819 0.75495 0.84616 0.88702 0.88908 0.88997 0.91733 0.90046 0.91823 0.90990 0.91216 0.98942 0.91442 0.94050 0.97068 0.90847 0.86444 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 7.86 71.98 0.57 -4.27 16 2 C 0.09 3.47 0.78 -10.70 -0.01 3.46 16 3 C 0.15 5.33 4.85 86.38 0.42 5.74 16 4 N -0.70 -20.46 5.19 -467.08 -2.42 -22.89 16 5 C 0.58 19.00 7.79 86.45 0.67 19.67 16 6 O -0.58 -23.79 16.88 -4.33 -0.07 -23.86 16 7 C -0.08 -2.03 7.06 40.37 0.29 -1.75 16 8 C -0.11 -2.95 10.62 22.47 0.24 -2.71 16 9 C -0.19 -3.85 5.91 -20.11 -0.12 -3.96 16 10 C 0.07 1.08 7.02 41.63 0.29 1.37 16 11 N -0.52 -9.44 5.98 -171.30 -1.02 -10.47 16 12 H 0.43 5.35 8.19 -92.71 -0.76 4.59 16 13 C -0.05 -0.47 6.30 30.06 0.19 -0.28 16 14 C -0.11 -0.84 5.90 30.76 0.18 -0.65 16 15 C -0.12 -1.09 5.90 30.78 0.18 -0.91 16 16 C -0.05 -0.69 6.28 30.01 0.19 -0.50 16 17 C 0.17 8.04 4.11 86.35 0.35 8.39 16 18 N -0.61 -29.48 2.57 -697.51 -1.79 -31.27 16 19 C -0.26 -13.75 9.65 84.04 0.81 -12.94 16 20 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 22 N -0.94 -55.24 11.14 21.65 0.24 -55.00 16 23 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C 0.10 4.01 6.74 86.35 0.58 4.59 16 28 C 0.05 1.62 6.60 72.08 0.48 2.09 16 29 O -0.39 -13.36 10.17 -148.98 -1.52 -14.87 16 30 H 0.08 1.81 6.58 -2.39 -0.02 1.80 16 31 H 0.06 2.23 6.12 -2.39 -0.01 2.22 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.41 9.35 6.12 -92.71 -0.57 8.78 16 36 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.07 3.63 6.16 -2.39 -0.01 3.61 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 2.70 7.96 -2.38 -0.02 2.68 16 50 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 51 H 0.06 1.79 6.26 -2.39 -0.01 1.78 16 Total: -1.00 -72.66 396.71 0.80 -71.86 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.37 Total: 25.47 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.73 Total: 15.01 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.00 Total: -119.63 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.59 Total: -38.73 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.66 0.80 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108329927.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.406 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds