Wall clock time and date at job start Wed Apr 1 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.51044 * 2 1 4 4 N 1.46499 * 109.47060 * 60.10614 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99544 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47117 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47215 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46953 * 180.02562 * 9 8 7 11 11 C 1.38232 * 119.61584 * 125.00477 * 10 9 8 12 12 C 1.38628 * 119.16053 * 179.97438 * 11 10 9 13 13 C 1.38678 * 118.41988 * 0.02562 * 12 11 10 14 14 C 1.38186 * 119.16202 * 359.97438 * 13 12 11 15 15 N 1.31848 * 119.61866 * 304.72344 * 10 9 8 16 16 C 1.53290 * 109.55014 * 239.87269 * 2 1 3 17 17 N 1.47232 * 108.40967 * 292.35570 * 16 2 1 18 18 C 1.36937 * 121.03256 * 129.46000 * 17 16 2 19 19 H 1.07999 * 119.99830 * 333.77469 * 18 17 16 20 20 C 1.38814 * 119.99671 * 153.77042 * 18 17 16 21 21 N 1.31617 * 119.99660 * 160.02496 * 20 18 17 22 22 Si 1.86793 * 120.00266 * 340.02129 * 20 18 17 23 23 H 1.48503 * 109.46760 * 91.88567 * 22 20 18 24 24 H 1.48497 * 109.47347 * 211.88792 * 22 20 18 25 25 H 1.48498 * 109.47201 * 331.89168 * 22 20 18 26 26 C 1.47155 * 117.98347 * 309.49012 * 17 16 2 27 27 C 1.53294 * 108.41729 * 50.51829 * 26 17 16 28 28 O 1.42960 * 109.50956 * 120.10422 * 2 1 3 29 29 H 1.09001 * 109.46460 * 299.89523 * 1 2 3 30 30 H 1.08998 * 109.46862 * 59.89749 * 1 2 3 31 31 H 1.08998 * 109.46926 * 179.89857 * 1 2 3 32 32 H 1.09004 * 109.46468 * 180.10168 * 3 2 1 33 33 H 1.08996 * 109.47418 * 300.09885 * 3 2 1 34 34 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 35 35 H 1.08993 * 109.47471 * 300.00068 * 7 5 4 36 36 H 1.09005 * 109.47207 * 60.00128 * 7 5 4 37 37 H 1.09002 * 109.47316 * 300.00763 * 8 7 5 38 38 H 1.09003 * 109.46684 * 59.99697 * 8 7 5 39 39 H 1.09001 * 109.47780 * 300.00077 * 9 8 7 40 40 H 1.09005 * 109.47123 * 60.00614 * 9 8 7 41 41 H 1.07994 * 120.42120 * 359.97438 * 11 10 9 42 42 H 1.07993 * 120.79279 * 180.02562 * 12 11 10 43 43 H 1.07993 * 120.41733 * 180.02562 * 13 12 11 44 44 H 1.07998 * 119.61266 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.68378 * 52.07916 * 16 2 1 46 46 H 1.09000 * 109.68200 * 172.63044 * 16 2 1 47 47 H 0.97002 * 120.00062 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.68049 * 290.77118 * 26 17 16 49 49 H 1.09003 * 109.67731 * 170.25941 * 26 17 16 50 50 H 1.08998 * 109.51349 * 67.59796 * 27 26 17 51 51 H 1.08996 * 109.51070 * 187.70400 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5553 2.1323 1.1974 5 6 1.8818 3.4225 1.4107 6 8 2.5780 4.0118 0.6114 7 6 1.3816 4.1326 2.6421 8 6 1.8927 5.5748 2.6422 9 6 1.3844 6.2959 3.8920 10 6 1.8874 7.7166 3.8917 11 6 0.9869 8.7600 3.9978 12 6 1.4599 10.0631 3.9970 13 6 2.8271 10.2690 3.8887 14 6 3.6665 9.1761 3.7863 15 7 3.1815 7.9496 3.7959 16 6 2.0431 -0.7250 -1.2494 17 7 1.6979 -2.1517 -1.1337 18 6 1.0641 -2.8096 -2.1537 19 1 0.4437 -2.2611 -2.8469 20 6 1.2192 -4.1816 -2.2967 21 7 0.3423 -4.8740 -2.9924 22 14 2.6723 -5.0453 -1.5020 23 1 2.2861 -5.5207 -0.1492 24 1 3.0766 -6.2045 -2.3374 25 1 3.8095 -4.0971 -1.3874 26 6 2.0542 -2.8494 0.1120 27 6 1.5405 -2.0209 1.2951 28 8 2.0075 -0.6759 1.1658 29 1 -0.3632 0.5122 0.8910 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 3.1311 1.4413 -0.0018 33 1 1.6767 1.9567 -0.8890 34 1 0.9982 1.6610 1.8364 35 1 0.2917 4.1331 2.6438 36 1 1.7461 3.6183 3.5314 37 1 2.9827 5.5740 2.6406 38 1 1.5286 6.0892 1.7528 39 1 0.2944 6.2968 3.8931 40 1 1.7483 5.7816 4.7816 41 1 -0.0716 8.5626 4.0801 42 1 0.7800 10.8981 4.0789 43 1 3.2306 11.2707 3.8852 44 1 4.7324 9.3280 3.7019 45 1 1.5715 -0.3044 -2.1376 46 1 3.1251 -0.6139 -1.3201 47 1 0.4508 -5.8327 -3.0927 48 1 3.1373 -2.9521 0.1784 49 1 1.5904 -3.8358 0.1257 50 1 0.4506 -2.0290 1.2993 51 1 1.9115 -2.4479 2.2268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108356952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:55 Heat of formation + Delta-G solvation = -27.633014 kcal Electronic energy + Delta-G solvation = -29918.886212 eV Core-core repulsion = 25818.841174 eV Total energy + Delta-G solvation = -4100.045037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57004 -39.95227 -39.01038 -35.50992 -35.01568 -34.42422 -32.76229 -32.28459 -31.68205 -31.34586 -28.47764 -28.07852 -26.53683 -25.72424 -23.97899 -23.30979 -23.14520 -21.70230 -21.20477 -20.25767 -19.04234 -17.51842 -17.08451 -16.85757 -16.58989 -16.29395 -15.85575 -15.81980 -15.58076 -15.38096 -14.65560 -14.52091 -14.29902 -14.14768 -13.89774 -13.86557 -13.68931 -13.48326 -13.27875 -12.84850 -12.46909 -12.43770 -12.37190 -12.07014 -11.94802 -11.81132 -11.61648 -11.54927 -11.46405 -11.01785 -10.95562 -10.83222 -10.39289 -10.31002 -10.23997 -9.87759 -9.73319 -9.64654 -9.55644 -9.42062 -9.31595 -8.94716 -8.60370 -7.05114 -6.01828 -3.38996 0.73530 0.91261 2.71221 3.21267 3.25492 3.44275 3.45223 3.47499 3.93553 4.02061 4.27551 4.45967 4.47156 4.63932 4.69645 4.73386 4.74659 4.82591 4.89031 5.11049 5.16377 5.19459 5.22955 5.27703 5.30505 5.36888 5.38596 5.43651 5.52314 5.71561 5.73379 5.76508 5.79492 5.82188 5.88436 5.97043 5.99073 6.06934 6.18172 6.21647 6.22476 6.34698 6.44685 6.47326 6.53488 6.55612 6.72223 7.58280 7.60870 7.66778 7.81540 8.23392 8.30043 8.81572 9.62473 9.98586 11.13694 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035578 B = 0.001615 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.811838 B =17336.217699 C =17387.907319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 C 0.138 3.862 4 N -0.720 5.720 5 C 0.509 3.491 6 O -0.545 6.545 7 C -0.141 4.141 8 C -0.094 4.094 9 C -0.071 4.071 10 C 0.135 3.865 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.183 4.183 14 C 0.103 3.897 15 N -0.479 5.479 16 C 0.131 3.869 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.088 0.912 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.271 1.271 26 C 0.089 3.911 27 C 0.046 3.954 28 O -0.380 6.380 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.403 0.597 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.155 0.845 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.263 0.737 48 H 0.034 0.966 49 H 0.081 0.919 50 H 0.056 0.944 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 25.789 17.394 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.014 3.986 4 N -0.372 5.372 5 C 0.295 3.705 6 O -0.423 6.423 7 C -0.181 4.181 8 C -0.132 4.132 9 C -0.109 4.109 10 C -0.003 4.003 11 C -0.193 4.193 12 C -0.100 4.100 13 C -0.203 4.203 14 C -0.054 4.054 15 N -0.188 5.188 16 C 0.004 3.996 17 N -0.328 5.328 18 C -0.388 4.388 19 H 0.106 0.894 20 C -0.175 4.175 21 N -0.549 5.549 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.196 1.196 26 C -0.037 4.037 27 C -0.032 4.032 28 O -0.299 6.299 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.173 0.827 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.622 25.409 16.768 30.449 hybrid contribution -0.210 -0.314 0.567 0.681 sum 0.412 25.094 17.335 30.503 Atomic orbital electron populations 1.22255 0.95084 1.03884 1.01171 1.22231 0.93979 0.90622 0.88608 1.21324 0.99872 0.89594 0.87833 1.45968 1.53706 1.11839 1.25653 1.20663 0.80350 0.81760 0.87706 1.90708 1.38060 1.66222 1.47311 1.21680 1.02458 0.97002 0.96923 1.21223 1.02742 0.92552 0.96730 1.20612 1.00419 0.89992 0.99911 1.21302 0.88952 0.96232 0.93813 1.22021 1.01165 0.93242 1.02832 1.21596 0.95743 0.97198 0.95505 1.22150 0.94506 1.00751 1.02856 1.22798 1.00528 0.87505 0.94537 1.67500 1.15143 1.24198 1.11986 1.21480 0.97744 0.85465 0.94941 1.44317 1.69320 1.05695 1.13475 1.18895 1.21779 0.91113 1.07027 0.89402 1.25238 0.97962 0.96471 0.97827 1.69818 1.34353 1.07067 1.43694 0.86972 0.85188 0.78874 0.77510 1.21649 1.23053 1.19578 1.22026 0.98197 0.96791 0.86669 1.23084 0.98960 0.82494 0.98680 1.87841 1.72896 1.26039 1.43130 0.93336 0.91797 0.90253 0.90908 0.90157 0.76181 0.88996 0.88778 0.89945 0.91392 0.90190 0.89737 0.84783 0.84911 0.84889 0.82734 0.90831 0.94841 0.92675 0.94839 0.90119 0.92580 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 7.92 37.16 0.29 -2.19 16 2 C 0.09 1.39 0.76 -90.47 -0.07 1.32 16 3 C 0.14 1.98 4.82 -4.04 -0.02 1.96 16 4 N -0.72 -8.82 5.15 -60.30 -0.31 -9.13 16 5 C 0.51 6.47 7.83 -10.99 -0.09 6.39 16 6 O -0.55 -9.20 15.98 5.56 0.09 -9.11 16 7 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 8 C -0.09 -0.89 4.36 -26.73 -0.12 -1.01 16 9 C -0.07 -0.51 5.61 -27.88 -0.16 -0.67 16 10 C 0.13 1.19 6.17 -82.59 -0.51 0.68 16 11 C -0.17 -1.21 9.71 -39.44 -0.38 -1.59 16 12 C -0.07 -0.46 10.18 -39.27 -0.40 -0.86 16 13 C -0.18 -1.16 10.11 -39.44 -0.40 -1.56 16 14 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 15 N -0.48 -4.96 9.89 -9.47 -0.09 -5.06 16 16 C 0.13 2.52 5.41 -3.49 -0.02 2.50 16 17 N -0.60 -13.86 2.36 -171.76 -0.41 -14.26 16 18 C -0.26 -7.03 10.10 -15.06 -0.15 -7.18 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 21 N -0.91 -27.15 13.97 55.49 0.78 -26.38 16 22 Si 0.88 22.05 24.28 -169.99 -4.13 17.92 16 23 H -0.29 -6.87 6.58 56.52 0.37 -6.50 16 24 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 26 C 0.09 1.88 4.38 -3.53 -0.02 1.87 16 27 C 0.05 0.78 6.60 37.31 0.25 1.03 16 28 O -0.38 -6.38 9.97 -35.23 -0.35 -6.73 16 29 H 0.05 0.60 6.87 -51.93 -0.36 0.24 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 4.23 7.20 -40.82 -0.29 3.94 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 38 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.13 0.63 7.95 -52.49 -0.42 0.21 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.07 1.39 7.96 -51.93 -0.41 0.97 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.03 0.73 6.86 -51.93 -0.36 0.38 16 49 H 0.08 1.84 4.60 -51.93 -0.24 1.60 16 50 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 51 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -34.17 401.32 -8.84 -43.01 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.23 Total: 3.13 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.23 Total: 0.56 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.03 Total: -54.83 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.26 Total: -15.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.13 Total: 17.92 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.17 -8.84 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108356952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.378 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds