Wall clock time and date at job start Wed Apr 1 2020 05:17:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 C 1.52998 * 109.51044 * 2 1
4 4 N 1.46499 * 109.47060 * 60.10614 * 3 2 1
5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2
6 6 O 1.21281 * 119.99544 * 359.97438 * 5 4 3
7 7 C 1.50694 * 119.99869 * 179.97438 * 5 4 3
8 8 C 1.53002 * 109.47117 * 179.97438 * 7 5 4
9 9 C 1.52992 * 109.47215 * 179.97438 * 8 7 5
10 10 C 1.50704 * 109.46953 * 180.02562 * 9 8 7
11 11 C 1.38232 * 119.61584 * 125.00477 * 10 9 8
12 12 C 1.38628 * 119.16053 * 179.97438 * 11 10 9
13 13 C 1.38678 * 118.41988 * 0.02562 * 12 11 10
14 14 C 1.38186 * 119.16202 * 359.97438 * 13 12 11
15 15 N 1.31848 * 119.61866 * 304.72344 * 10 9 8
16 16 C 1.53290 * 109.55014 * 239.87269 * 2 1 3
17 17 N 1.47232 * 108.40967 * 292.35570 * 16 2 1
18 18 C 1.36937 * 121.03256 * 129.46000 * 17 16 2
19 19 H 1.07999 * 119.99830 * 333.77469 * 18 17 16
20 20 C 1.38814 * 119.99671 * 153.77042 * 18 17 16
21 21 N 1.31617 * 119.99660 * 160.02496 * 20 18 17
22 22 Si 1.86793 * 120.00266 * 340.02129 * 20 18 17
23 23 H 1.48503 * 109.46760 * 91.88567 * 22 20 18
24 24 H 1.48497 * 109.47347 * 211.88792 * 22 20 18
25 25 H 1.48498 * 109.47201 * 331.89168 * 22 20 18
26 26 C 1.47155 * 117.98347 * 309.49012 * 17 16 2
27 27 C 1.53294 * 108.41729 * 50.51829 * 26 17 16
28 28 O 1.42960 * 109.50956 * 120.10422 * 2 1 3
29 29 H 1.09001 * 109.46460 * 299.89523 * 1 2 3
30 30 H 1.08998 * 109.46862 * 59.89749 * 1 2 3
31 31 H 1.08998 * 109.46926 * 179.89857 * 1 2 3
32 32 H 1.09004 * 109.46468 * 180.10168 * 3 2 1
33 33 H 1.08996 * 109.47418 * 300.09885 * 3 2 1
34 34 H 0.96992 * 120.00094 * 359.97438 * 4 3 2
35 35 H 1.08993 * 109.47471 * 300.00068 * 7 5 4
36 36 H 1.09005 * 109.47207 * 60.00128 * 7 5 4
37 37 H 1.09002 * 109.47316 * 300.00763 * 8 7 5
38 38 H 1.09003 * 109.46684 * 59.99697 * 8 7 5
39 39 H 1.09001 * 109.47780 * 300.00077 * 9 8 7
40 40 H 1.09005 * 109.47123 * 60.00614 * 9 8 7
41 41 H 1.07994 * 120.42120 * 359.97438 * 11 10 9
42 42 H 1.07993 * 120.79279 * 180.02562 * 12 11 10
43 43 H 1.07993 * 120.41733 * 180.02562 * 13 12 11
44 44 H 1.07998 * 119.61266 * 180.02562 * 14 13 12
45 45 H 1.09001 * 109.68378 * 52.07916 * 16 2 1
46 46 H 1.09000 * 109.68200 * 172.63044 * 16 2 1
47 47 H 0.97002 * 120.00062 * 179.97438 * 21 20 18
48 48 H 1.08998 * 109.68049 * 290.77118 * 26 17 16
49 49 H 1.09003 * 109.67731 * 170.25941 * 26 17 16
50 50 H 1.08998 * 109.51349 * 67.59796 * 27 26 17
51 51 H 1.08996 * 109.51070 * 187.70400 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0411 1.4421 0.0000
4 7 1.5553 2.1323 1.1974
5 6 1.8818 3.4225 1.4107
6 8 2.5780 4.0118 0.6114
7 6 1.3816 4.1326 2.6421
8 6 1.8927 5.5748 2.6422
9 6 1.3844 6.2959 3.8920
10 6 1.8874 7.7166 3.8917
11 6 0.9869 8.7600 3.9978
12 6 1.4599 10.0631 3.9970
13 6 2.8271 10.2690 3.8887
14 6 3.6665 9.1761 3.7863
15 7 3.1815 7.9496 3.7959
16 6 2.0431 -0.7250 -1.2494
17 7 1.6979 -2.1517 -1.1337
18 6 1.0641 -2.8096 -2.1537
19 1 0.4437 -2.2611 -2.8469
20 6 1.2192 -4.1816 -2.2967
21 7 0.3423 -4.8740 -2.9924
22 14 2.6723 -5.0453 -1.5020
23 1 2.2861 -5.5207 -0.1492
24 1 3.0766 -6.2045 -2.3374
25 1 3.8095 -4.0971 -1.3874
26 6 2.0542 -2.8494 0.1120
27 6 1.5405 -2.0209 1.2951
28 8 2.0075 -0.6759 1.1658
29 1 -0.3632 0.5122 0.8910
30 1 -0.3633 0.5154 -0.8891
31 1 -0.3633 -1.0277 -0.0018
32 1 3.1311 1.4413 -0.0018
33 1 1.6767 1.9567 -0.8890
34 1 0.9982 1.6610 1.8364
35 1 0.2917 4.1331 2.6438
36 1 1.7461 3.6183 3.5314
37 1 2.9827 5.5740 2.6406
38 1 1.5286 6.0892 1.7528
39 1 0.2944 6.2968 3.8931
40 1 1.7483 5.7816 4.7816
41 1 -0.0716 8.5626 4.0801
42 1 0.7800 10.8981 4.0789
43 1 3.2306 11.2707 3.8852
44 1 4.7324 9.3280 3.7019
45 1 1.5715 -0.3044 -2.1376
46 1 3.1251 -0.6139 -1.3201
47 1 0.4508 -5.8327 -3.0927
48 1 3.1373 -2.9521 0.1784
49 1 1.5904 -3.8358 0.1257
50 1 0.4506 -2.0290 1.2993
51 1 1.9115 -2.4479 2.2268
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108356952.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:54
Heat of formation + Delta-G solvation = -51.408170 kcal
Electronic energy + Delta-G solvation = -29919.917180 eV
Core-core repulsion = 25818.841174 eV
Total energy + Delta-G solvation = -4101.076006 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.24320 -41.03316 -40.25433 -36.81191 -36.05200 -35.71586 -33.77248 -33.32096
-33.19170 -32.26079 -29.96485 -28.87778 -28.05765 -26.99707 -24.81415 -24.55594
-24.05453 -23.08868 -21.97772 -21.25128 -20.47299 -18.97907 -18.30023 -17.63657
-17.54344 -17.33873 -17.15411 -16.83243 -16.56749 -16.26511 -15.97473 -15.80681
-15.59966 -15.46353 -15.31526 -14.83289 -14.70488 -14.27774 -14.14175 -14.05024
-13.94666 -13.76712 -13.47221 -13.28279 -13.02067 -12.94772 -12.76042 -12.59647
-12.52554 -12.34652 -12.18481 -12.11945 -12.09409 -11.64340 -11.56381 -11.28505
-11.07873 -10.86891 -10.75881 -10.48435 -10.27659 -10.04174 -9.83449 -8.95528
-8.19087 -5.52046 0.22368 0.41843 1.25699 1.40293 1.47966 1.73207
2.22451 2.37739 2.68448 2.90397 3.01313 3.21171 3.44649 3.75638
3.80032 3.86671 3.91619 3.98671 4.06173 4.16439 4.23210 4.25706
4.29791 4.30266 4.32794 4.46017 4.54215 4.57747 4.67388 4.67941
4.71334 4.75035 4.78281 4.81919 4.85059 4.88527 4.95209 5.00956
5.02533 5.06060 5.18835 5.32306 5.36485 5.38000 5.42005 5.50801
5.77829 5.86752 6.08288 6.23527 6.63346 6.81459 7.13346 7.33457
7.54126 7.94951 9.00138
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.035578 B = 0.001615 C = 0.001610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 786.811838 B =17336.217699 C =17387.907319
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.099 3.901
3 C 0.146 3.854
4 N -0.710 5.710
5 C 0.505 3.495
6 O -0.594 6.594
7 C -0.130 4.130
8 C -0.087 4.087
9 C -0.065 4.065
10 C 0.108 3.892
11 C -0.177 4.177
12 C -0.080 4.080
13 C -0.182 4.182
14 C 0.079 3.921
15 N -0.518 5.518
16 C 0.123 3.877
17 N -0.615 5.615
18 C -0.245 4.245
19 H 0.058 0.942
20 C -0.031 4.031
21 N -0.953 5.953
22 Si 0.944 3.056
23 H -0.268 1.268
24 H -0.312 1.312
25 H -0.271 1.271
26 C 0.080 3.920
27 C 0.055 3.945
28 O -0.376 6.376
29 H 0.081 0.919
30 H 0.064 0.936
31 H 0.053 0.947
32 H 0.058 0.942
33 H 0.081 0.919
34 H 0.415 0.585
35 H 0.127 0.873
36 H 0.118 0.882
37 H 0.048 0.952
38 H 0.047 0.953
39 H 0.109 0.891
40 H 0.090 0.910
41 H 0.159 0.841
42 H 0.161 0.839
43 H 0.158 0.842
44 H 0.165 0.835
45 H 0.070 0.930
46 H 0.031 0.969
47 H 0.262 0.738
48 H 0.031 0.969
49 H 0.065 0.935
50 H 0.062 0.938
51 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.381 27.472 20.506 34.310
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.058 3.942
3 C 0.021 3.979
4 N -0.363 5.363
5 C 0.294 3.706
6 O -0.474 6.474
7 C -0.169 4.169
8 C -0.125 4.125
9 C -0.102 4.102
10 C -0.029 4.029
11 C -0.196 4.196
12 C -0.106 4.106
13 C -0.202 4.202
14 C -0.077 4.077
15 N -0.229 5.229
16 C -0.003 4.003
17 N -0.340 5.340
18 C -0.374 4.374
19 H 0.076 0.924
20 C -0.226 4.226
21 N -0.599 5.599
22 Si 0.774 3.226
23 H -0.194 1.194
24 H -0.241 1.241
25 H -0.196 1.196
26 C -0.045 4.045
27 C -0.023 4.023
28 O -0.296 6.296
29 H 0.100 0.900
30 H 0.083 0.917
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.099 0.901
34 H 0.253 0.747
35 H 0.145 0.855
36 H 0.136 0.864
37 H 0.067 0.933
38 H 0.066 0.934
39 H 0.127 0.873
40 H 0.109 0.891
41 H 0.177 0.823
42 H 0.179 0.821
43 H 0.176 0.824
44 H 0.182 0.818
45 H 0.089 0.911
46 H 0.049 0.951
47 H 0.071 0.929
48 H 0.049 0.951
49 H 0.083 0.917
50 H 0.080 0.920
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -0.244 27.114 19.943 33.659
hybrid contribution 0.066 -0.702 -0.453 0.839
sum -0.178 26.411 19.490 32.824
Atomic orbital electron populations
1.22181 0.93908 1.02665 1.02936 1.22046 0.94665 0.90822 0.86683
1.21072 0.98999 0.88726 0.89072 1.45862 1.53548 1.11799 1.25055
1.21458 0.79312 0.81508 0.88350 1.90697 1.40264 1.67210 1.49271
1.21715 1.04378 0.95563 0.95244 1.21078 1.00623 0.93580 0.97249
1.20622 1.01991 0.89015 0.98605 1.21662 0.88941 0.97558 0.94744
1.22342 1.02152 0.93173 1.01936 1.22026 0.96130 0.97910 0.94496
1.22459 0.94729 1.01367 1.01642 1.23130 1.01597 0.87700 0.95297
1.67458 1.16460 1.25557 1.13376 1.21660 0.97708 0.83904 0.97010
1.44385 1.69256 1.06959 1.13441 1.18824 1.20485 0.91048 1.07074
0.92399 1.25807 1.00114 0.97348 0.99338 1.69938 1.36219 1.07252
1.46469 0.85989 0.81856 0.77326 0.77471 1.19439 1.24090 1.19607
1.22133 0.97948 0.96909 0.87478 1.23049 0.99352 0.81889 0.98000
1.87861 1.73041 1.25784 1.42867 0.90031 0.91660 0.92837 0.92352
0.90087 0.74708 0.85521 0.86405 0.93338 0.93421 0.87296 0.89128
0.82349 0.82104 0.82426 0.81756 0.91138 0.95120 0.92888 0.95111
0.91709 0.91982 0.86287
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.42 7.92 71.99 0.57 -3.85 16
2 C 0.10 2.99 0.76 -10.69 -0.01 2.98 16
3 C 0.15 4.01 4.82 86.38 0.42 4.42 16
4 N -0.71 -15.59 5.15 -463.07 -2.39 -17.98 16
5 C 0.51 12.00 7.83 87.65 0.69 12.68 16
6 O -0.59 -20.05 15.98 -3.03 -0.05 -20.10 16
7 C -0.13 -1.81 5.70 29.85 0.17 -1.64 16
8 C -0.09 -1.57 4.36 30.59 0.13 -1.44 16
9 C -0.06 -0.80 5.61 29.85 0.17 -0.64 16
10 C 0.11 1.82 6.17 42.56 0.26 2.08 16
11 C -0.18 -2.11 9.71 22.36 0.22 -1.89 16
12 C -0.08 -0.81 10.18 22.47 0.23 -0.58 16
13 C -0.18 -2.07 10.11 22.36 0.23 -1.85 16
14 C 0.08 1.29 11.18 84.67 0.95 2.23 16
15 N -0.52 -10.90 9.89 -183.88 -1.82 -12.72 16
16 C 0.12 4.71 5.41 86.34 0.47 5.18 16
17 N -0.62 -28.12 2.36 -697.34 -1.65 -29.77 16
18 C -0.25 -13.51 10.10 84.03 0.85 -12.66 16
19 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16
20 C -0.03 -1.77 5.26 84.86 0.45 -1.33 16
21 N -0.95 -58.63 13.97 21.65 0.30 -58.32 16
22 Si 0.94 46.01 24.28 68.60 1.67 47.67 16
23 H -0.27 -12.04 6.58 99.48 0.65 -11.38 16
24 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16
25 H -0.27 -13.04 6.54 99.48 0.65 -12.39 16
26 C 0.08 3.28 4.38 86.35 0.38 3.66 16
27 C 0.05 1.71 6.60 72.08 0.48 2.18 16
28 O -0.38 -11.55 9.97 -148.98 -1.49 -13.04 16
29 H 0.08 1.71 6.87 -2.39 -0.02 1.70 16
30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.05 1.79 6.12 -2.39 -0.01 1.78 16
32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16
33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
34 H 0.42 7.08 7.20 -92.71 -0.67 6.41 16
35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16
37 H 0.05 1.20 7.91 -2.39 -0.02 1.18 16
38 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16
39 H 0.11 0.69 7.87 -2.39 -0.02 0.67 16
40 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16
41 H 0.16 0.97 7.95 -2.91 -0.02 0.95 16
42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16
43 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16
44 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16
45 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16
46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
47 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16
48 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16
49 H 0.06 2.86 4.60 -2.39 -0.01 2.85 16
50 H 0.06 1.90 6.25 -2.39 -0.01 1.88 16
51 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16
Total: -1.00 -77.93 401.32 1.37 -76.56
By element:
Atomic # 1 Polarization: 18.00 SS G_CDS: 0.15 Total: 18.15 kcal
Atomic # 6 Polarization: 2.91 SS G_CDS: 6.63 Total: 9.54 kcal
Atomic # 7 Polarization: -113.25 SS G_CDS: -5.55 Total: -118.79 kcal
Atomic # 8 Polarization: -31.60 SS G_CDS: -1.53 Total: -33.14 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.67 kcal
Total: -77.93 1.37 -76.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108356952.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.156 kcal
(2) G-P(sol) polarization free energy of solvation -77.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds