Wall clock time and date at job start Wed Apr 1 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.51044 * 2 1 4 4 N 1.46499 * 109.47060 * 60.10614 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99544 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47117 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47215 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46953 * 180.02562 * 9 8 7 11 11 C 1.38232 * 119.61584 * 125.00477 * 10 9 8 12 12 C 1.38628 * 119.16053 * 179.97438 * 11 10 9 13 13 C 1.38678 * 118.41988 * 0.02562 * 12 11 10 14 14 C 1.38186 * 119.16202 * 359.97438 * 13 12 11 15 15 N 1.31848 * 119.61866 * 304.72344 * 10 9 8 16 16 C 1.53290 * 109.55014 * 239.87269 * 2 1 3 17 17 N 1.47232 * 108.40967 * 292.35570 * 16 2 1 18 18 C 1.36937 * 121.03256 * 129.46000 * 17 16 2 19 19 H 1.07999 * 119.99830 * 333.77469 * 18 17 16 20 20 C 1.38814 * 119.99671 * 153.77042 * 18 17 16 21 21 N 1.31617 * 119.99660 * 160.02496 * 20 18 17 22 22 Si 1.86793 * 120.00266 * 340.02129 * 20 18 17 23 23 H 1.48503 * 109.46760 * 91.88567 * 22 20 18 24 24 H 1.48497 * 109.47347 * 211.88792 * 22 20 18 25 25 H 1.48498 * 109.47201 * 331.89168 * 22 20 18 26 26 C 1.47155 * 117.98347 * 309.49012 * 17 16 2 27 27 C 1.53294 * 108.41729 * 50.51829 * 26 17 16 28 28 O 1.42960 * 109.50956 * 120.10422 * 2 1 3 29 29 H 1.09001 * 109.46460 * 299.89523 * 1 2 3 30 30 H 1.08998 * 109.46862 * 59.89749 * 1 2 3 31 31 H 1.08998 * 109.46926 * 179.89857 * 1 2 3 32 32 H 1.09004 * 109.46468 * 180.10168 * 3 2 1 33 33 H 1.08996 * 109.47418 * 300.09885 * 3 2 1 34 34 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 35 35 H 1.08993 * 109.47471 * 300.00068 * 7 5 4 36 36 H 1.09005 * 109.47207 * 60.00128 * 7 5 4 37 37 H 1.09002 * 109.47316 * 300.00763 * 8 7 5 38 38 H 1.09003 * 109.46684 * 59.99697 * 8 7 5 39 39 H 1.09001 * 109.47780 * 300.00077 * 9 8 7 40 40 H 1.09005 * 109.47123 * 60.00614 * 9 8 7 41 41 H 1.07994 * 120.42120 * 359.97438 * 11 10 9 42 42 H 1.07993 * 120.79279 * 180.02562 * 12 11 10 43 43 H 1.07993 * 120.41733 * 180.02562 * 13 12 11 44 44 H 1.07998 * 119.61266 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.68378 * 52.07916 * 16 2 1 46 46 H 1.09000 * 109.68200 * 172.63044 * 16 2 1 47 47 H 0.97002 * 120.00062 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.68049 * 290.77118 * 26 17 16 49 49 H 1.09003 * 109.67731 * 170.25941 * 26 17 16 50 50 H 1.08998 * 109.51349 * 67.59796 * 27 26 17 51 51 H 1.08996 * 109.51070 * 187.70400 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5553 2.1323 1.1974 5 6 1.8818 3.4225 1.4107 6 8 2.5780 4.0118 0.6114 7 6 1.3816 4.1326 2.6421 8 6 1.8927 5.5748 2.6422 9 6 1.3844 6.2959 3.8920 10 6 1.8874 7.7166 3.8917 11 6 0.9869 8.7600 3.9978 12 6 1.4599 10.0631 3.9970 13 6 2.8271 10.2690 3.8887 14 6 3.6665 9.1761 3.7863 15 7 3.1815 7.9496 3.7959 16 6 2.0431 -0.7250 -1.2494 17 7 1.6979 -2.1517 -1.1337 18 6 1.0641 -2.8096 -2.1537 19 1 0.4437 -2.2611 -2.8469 20 6 1.2192 -4.1816 -2.2967 21 7 0.3423 -4.8740 -2.9924 22 14 2.6723 -5.0453 -1.5020 23 1 2.2861 -5.5207 -0.1492 24 1 3.0766 -6.2045 -2.3374 25 1 3.8095 -4.0971 -1.3874 26 6 2.0542 -2.8494 0.1120 27 6 1.5405 -2.0209 1.2951 28 8 2.0075 -0.6759 1.1658 29 1 -0.3632 0.5122 0.8910 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0018 32 1 3.1311 1.4413 -0.0018 33 1 1.6767 1.9567 -0.8890 34 1 0.9982 1.6610 1.8364 35 1 0.2917 4.1331 2.6438 36 1 1.7461 3.6183 3.5314 37 1 2.9827 5.5740 2.6406 38 1 1.5286 6.0892 1.7528 39 1 0.2944 6.2968 3.8931 40 1 1.7483 5.7816 4.7816 41 1 -0.0716 8.5626 4.0801 42 1 0.7800 10.8981 4.0789 43 1 3.2306 11.2707 3.8852 44 1 4.7324 9.3280 3.7019 45 1 1.5715 -0.3044 -2.1376 46 1 3.1251 -0.6139 -1.3201 47 1 0.4508 -5.8327 -3.0927 48 1 3.1373 -2.9521 0.1784 49 1 1.5904 -3.8358 0.1257 50 1 0.4506 -2.0290 1.2993 51 1 1.9115 -2.4479 2.2268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108356952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:54 Heat of formation + Delta-G solvation = -51.408170 kcal Electronic energy + Delta-G solvation = -29919.917180 eV Core-core repulsion = 25818.841174 eV Total energy + Delta-G solvation = -4101.076006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.24320 -41.03316 -40.25433 -36.81191 -36.05200 -35.71586 -33.77248 -33.32096 -33.19170 -32.26079 -29.96485 -28.87778 -28.05765 -26.99707 -24.81415 -24.55594 -24.05453 -23.08868 -21.97772 -21.25128 -20.47299 -18.97907 -18.30023 -17.63657 -17.54344 -17.33873 -17.15411 -16.83243 -16.56749 -16.26511 -15.97473 -15.80681 -15.59966 -15.46353 -15.31526 -14.83289 -14.70488 -14.27774 -14.14175 -14.05024 -13.94666 -13.76712 -13.47221 -13.28279 -13.02067 -12.94772 -12.76042 -12.59647 -12.52554 -12.34652 -12.18481 -12.11945 -12.09409 -11.64340 -11.56381 -11.28505 -11.07873 -10.86891 -10.75881 -10.48435 -10.27659 -10.04174 -9.83449 -8.95528 -8.19087 -5.52046 0.22368 0.41843 1.25699 1.40293 1.47966 1.73207 2.22451 2.37739 2.68448 2.90397 3.01313 3.21171 3.44649 3.75638 3.80032 3.86671 3.91619 3.98671 4.06173 4.16439 4.23210 4.25706 4.29791 4.30266 4.32794 4.46017 4.54215 4.57747 4.67388 4.67941 4.71334 4.75035 4.78281 4.81919 4.85059 4.88527 4.95209 5.00956 5.02533 5.06060 5.18835 5.32306 5.36485 5.38000 5.42005 5.50801 5.77829 5.86752 6.08288 6.23527 6.63346 6.81459 7.13346 7.33457 7.54126 7.94951 9.00138 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035578 B = 0.001615 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.811838 B =17336.217699 C =17387.907319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 C 0.146 3.854 4 N -0.710 5.710 5 C 0.505 3.495 6 O -0.594 6.594 7 C -0.130 4.130 8 C -0.087 4.087 9 C -0.065 4.065 10 C 0.108 3.892 11 C -0.177 4.177 12 C -0.080 4.080 13 C -0.182 4.182 14 C 0.079 3.921 15 N -0.518 5.518 16 C 0.123 3.877 17 N -0.615 5.615 18 C -0.245 4.245 19 H 0.058 0.942 20 C -0.031 4.031 21 N -0.953 5.953 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.312 1.312 25 H -0.271 1.271 26 C 0.080 3.920 27 C 0.055 3.945 28 O -0.376 6.376 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.165 0.835 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 27.472 20.506 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.021 3.979 4 N -0.363 5.363 5 C 0.294 3.706 6 O -0.474 6.474 7 C -0.169 4.169 8 C -0.125 4.125 9 C -0.102 4.102 10 C -0.029 4.029 11 C -0.196 4.196 12 C -0.106 4.106 13 C -0.202 4.202 14 C -0.077 4.077 15 N -0.229 5.229 16 C -0.003 4.003 17 N -0.340 5.340 18 C -0.374 4.374 19 H 0.076 0.924 20 C -0.226 4.226 21 N -0.599 5.599 22 Si 0.774 3.226 23 H -0.194 1.194 24 H -0.241 1.241 25 H -0.196 1.196 26 C -0.045 4.045 27 C -0.023 4.023 28 O -0.296 6.296 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.177 0.823 42 H 0.179 0.821 43 H 0.176 0.824 44 H 0.182 0.818 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.244 27.114 19.943 33.659 hybrid contribution 0.066 -0.702 -0.453 0.839 sum -0.178 26.411 19.490 32.824 Atomic orbital electron populations 1.22181 0.93908 1.02665 1.02936 1.22046 0.94665 0.90822 0.86683 1.21072 0.98999 0.88726 0.89072 1.45862 1.53548 1.11799 1.25055 1.21458 0.79312 0.81508 0.88350 1.90697 1.40264 1.67210 1.49271 1.21715 1.04378 0.95563 0.95244 1.21078 1.00623 0.93580 0.97249 1.20622 1.01991 0.89015 0.98605 1.21662 0.88941 0.97558 0.94744 1.22342 1.02152 0.93173 1.01936 1.22026 0.96130 0.97910 0.94496 1.22459 0.94729 1.01367 1.01642 1.23130 1.01597 0.87700 0.95297 1.67458 1.16460 1.25557 1.13376 1.21660 0.97708 0.83904 0.97010 1.44385 1.69256 1.06959 1.13441 1.18824 1.20485 0.91048 1.07074 0.92399 1.25807 1.00114 0.97348 0.99338 1.69938 1.36219 1.07252 1.46469 0.85989 0.81856 0.77326 0.77471 1.19439 1.24090 1.19607 1.22133 0.97948 0.96909 0.87478 1.23049 0.99352 0.81889 0.98000 1.87861 1.73041 1.25784 1.42867 0.90031 0.91660 0.92837 0.92352 0.90087 0.74708 0.85521 0.86405 0.93338 0.93421 0.87296 0.89128 0.82349 0.82104 0.82426 0.81756 0.91138 0.95120 0.92888 0.95111 0.91709 0.91982 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 7.92 71.99 0.57 -3.85 16 2 C 0.10 2.99 0.76 -10.69 -0.01 2.98 16 3 C 0.15 4.01 4.82 86.38 0.42 4.42 16 4 N -0.71 -15.59 5.15 -463.07 -2.39 -17.98 16 5 C 0.51 12.00 7.83 87.65 0.69 12.68 16 6 O -0.59 -20.05 15.98 -3.03 -0.05 -20.10 16 7 C -0.13 -1.81 5.70 29.85 0.17 -1.64 16 8 C -0.09 -1.57 4.36 30.59 0.13 -1.44 16 9 C -0.06 -0.80 5.61 29.85 0.17 -0.64 16 10 C 0.11 1.82 6.17 42.56 0.26 2.08 16 11 C -0.18 -2.11 9.71 22.36 0.22 -1.89 16 12 C -0.08 -0.81 10.18 22.47 0.23 -0.58 16 13 C -0.18 -2.07 10.11 22.36 0.23 -1.85 16 14 C 0.08 1.29 11.18 84.67 0.95 2.23 16 15 N -0.52 -10.90 9.89 -183.88 -1.82 -12.72 16 16 C 0.12 4.71 5.41 86.34 0.47 5.18 16 17 N -0.62 -28.12 2.36 -697.34 -1.65 -29.77 16 18 C -0.25 -13.51 10.10 84.03 0.85 -12.66 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 20 C -0.03 -1.77 5.26 84.86 0.45 -1.33 16 21 N -0.95 -58.63 13.97 21.65 0.30 -58.32 16 22 Si 0.94 46.01 24.28 68.60 1.67 47.67 16 23 H -0.27 -12.04 6.58 99.48 0.65 -11.38 16 24 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 25 H -0.27 -13.04 6.54 99.48 0.65 -12.39 16 26 C 0.08 3.28 4.38 86.35 0.38 3.66 16 27 C 0.05 1.71 6.60 72.08 0.48 2.18 16 28 O -0.38 -11.55 9.97 -148.98 -1.49 -13.04 16 29 H 0.08 1.71 6.87 -2.39 -0.02 1.70 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.79 6.12 -2.39 -0.01 1.78 16 32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.42 7.08 7.20 -92.71 -0.67 6.41 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.05 1.20 7.91 -2.39 -0.02 1.18 16 38 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.11 0.69 7.87 -2.39 -0.02 0.67 16 40 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.16 0.97 7.95 -2.91 -0.02 0.95 16 42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 44 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 49 H 0.06 2.86 4.60 -2.39 -0.01 2.85 16 50 H 0.06 1.90 6.25 -2.39 -0.01 1.88 16 51 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -77.93 401.32 1.37 -76.56 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.15 Total: 18.15 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.63 Total: 9.54 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -5.55 Total: -118.79 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.53 Total: -33.14 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.67 kcal Total: -77.93 1.37 -76.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108356952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.156 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds