Wall clock time and date at job start Wed Apr 1 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00294 * 2 1 4 4 C 1.39712 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.39020 * 120.00453 * 180.02562 * 4 2 1 6 6 C 1.38209 * 120.21969 * 179.97438 * 5 4 2 7 7 C 1.38033 * 120.22502 * 359.72561 * 6 5 4 8 8 C 1.39577 * 120.00223 * 0.55249 * 7 6 5 9 9 C 1.47862 * 120.10423 * 179.71920 * 8 7 6 10 10 O 1.21559 * 119.99772 * 179.72501 * 9 8 7 11 11 N 1.34774 * 120.00512 * 359.72818 * 9 8 7 12 12 C 1.46502 * 120.00289 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.55421 * 60.12625 * 13 12 11 15 15 C 1.53294 * 109.51225 * 180.25616 * 13 12 11 16 16 N 1.47231 * 108.40580 * 172.23190 * 15 13 12 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 13 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 13 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.51185 * 300.00138 * 13 12 11 28 28 C 1.38645 * 120.00219 * 0.02562 * 4 2 1 29 29 H 1.09002 * 109.47346 * 269.99848 * 1 2 3 30 30 H 1.09006 * 109.46911 * 30.00049 * 1 2 3 31 31 H 1.09004 * 109.47367 * 149.99884 * 1 2 3 32 32 H 1.08994 * 109.47228 * 240.00124 * 3 2 1 33 33 H 1.09000 * 109.46575 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46920 * 120.00261 * 3 2 1 35 35 H 1.07996 * 119.89558 * 359.96131 * 5 4 2 36 36 H 1.07989 * 119.88611 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.99875 * 180.29883 * 7 6 5 38 38 H 0.97000 * 119.99622 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46877 * 60.00024 * 12 11 9 40 40 H 1.08999 * 109.47195 * 299.99992 * 12 11 9 41 41 H 1.09004 * 109.46996 * 299.87189 * 14 13 12 42 42 H 1.08996 * 109.47344 * 59.87067 * 14 13 12 43 43 H 1.09000 * 109.46808 * 179.87595 * 14 13 12 44 44 H 1.09001 * 109.68145 * 291.94467 * 15 13 12 45 45 H 1.09001 * 109.68444 * 52.49853 * 15 13 12 46 46 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 48 48 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 49 49 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 50 50 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 51 51 H 1.08001 * 120.11162 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2493 -2.4044 0.0022 7 6 3.5683 -3.6050 0.0084 8 6 2.1726 -3.6159 0.0020 9 6 1.4409 -4.9007 0.0024 10 8 0.2253 -4.9079 0.0019 11 7 2.1216 -6.0640 0.0034 12 6 1.3965 -7.3370 0.0044 13 6 2.3976 -8.4941 0.0061 14 6 3.2752 -8.4101 1.2566 15 6 1.6400 -9.8267 0.0006 16 7 2.6142 -10.9146 -0.1865 17 6 2.6317 -11.9982 0.6504 18 1 3.5463 -12.5542 0.7950 19 6 1.4739 -12.3822 1.3130 20 7 0.3039 -11.9390 0.9043 21 14 1.5763 -13.5280 2.7848 22 1 2.4047 -12.8993 3.8448 23 1 0.2109 -13.7826 3.3100 24 1 2.1951 -14.8127 2.3699 25 6 3.5694 -10.8020 -1.3002 26 6 4.2331 -9.4218 -1.2314 27 8 3.2201 -8.4155 -1.1606 28 6 1.4703 -2.4107 0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 2.8242 1.3264 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8242 1.3264 0.8899 35 1 4.0921 -0.2738 0.0004 36 1 5.3291 -2.3982 0.0030 37 1 4.1155 -4.5361 0.0141 38 1 3.0915 -6.0582 0.0035 39 1 0.7703 -7.3991 -0.8856 40 1 0.7702 -7.3977 0.8944 41 1 3.8170 -7.4643 1.2574 42 1 2.6475 -8.4700 2.1457 43 1 3.9863 -9.2362 1.2575 44 1 1.1214 -9.9580 0.9504 45 1 0.9185 -9.8355 -0.8164 46 1 -0.5051 -12.2070 1.3675 47 1 3.0422 -10.9090 -2.2482 48 1 4.3286 -11.5792 -1.2126 49 1 4.8649 -9.3655 -0.3450 50 1 4.8411 -9.2655 -2.1225 51 1 0.3903 -2.4128 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108364049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:30 Heat of formation + Delta-G solvation = -11.095554 kcal Electronic energy + Delta-G solvation = -30965.923460 eV Core-core repulsion = 26866.595540 eV Total energy + Delta-G solvation = -4099.327919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.30855 -39.30580 -38.49735 -36.27819 -34.92420 -34.31017 -32.00272 -31.29085 -31.21160 -30.17205 -28.56316 -27.93648 -26.49337 -25.65994 -25.03386 -23.28967 -23.11382 -21.54561 -21.16887 -19.98864 -18.78363 -18.16175 -17.03747 -16.38959 -16.13911 -15.80318 -15.72714 -15.40759 -15.26750 -15.07389 -14.65567 -14.38629 -14.12504 -14.00473 -13.80087 -13.71977 -13.47094 -13.03618 -12.97306 -12.89988 -12.64625 -12.55644 -12.38804 -12.34422 -11.87062 -11.80082 -11.57171 -11.21626 -11.17804 -10.99768 -10.79872 -10.67194 -10.30725 -10.26447 -10.10281 -10.00047 -9.78760 -9.51773 -9.11709 -9.03346 -8.74124 -8.53082 -7.56645 -6.73739 -5.83946 -3.27256 0.84816 1.38579 2.79501 2.99586 3.34070 3.38916 3.41818 3.42000 3.89331 4.26287 4.44120 4.62500 4.63893 4.72233 4.89758 4.95389 5.05190 5.08716 5.18536 5.25393 5.28955 5.34419 5.35907 5.44801 5.46922 5.50140 5.54311 5.69648 5.73063 5.93059 5.95311 6.00251 6.04940 6.12277 6.15592 6.26424 6.31973 6.33524 6.47418 6.53145 6.60308 6.71443 6.77841 6.83627 6.93804 7.08203 7.19114 7.47606 7.70636 7.73171 7.89361 8.33293 8.40034 9.11102 9.74348 10.31741 11.24032 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.002206 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.006713 B =12691.389099 C =13295.543315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.098 3.902 4 C 0.203 3.797 5 C -0.175 4.175 6 C -0.080 4.080 7 C -0.143 4.143 8 C -0.081 4.081 9 C 0.552 3.448 10 O -0.543 6.543 11 N -0.709 5.709 12 C 0.139 3.861 13 C 0.078 3.922 14 C -0.162 4.162 15 C 0.160 3.840 16 N -0.590 5.590 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 C -0.138 4.138 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.402 0.598 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.256 0.744 47 H 0.025 0.975 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.080 0.920 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 24.249 -1.674 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.352 5.352 3 C -0.046 4.046 4 C 0.102 3.898 5 C -0.198 4.198 6 C -0.098 4.098 7 C -0.163 4.163 8 C -0.085 4.085 9 C 0.338 3.662 10 O -0.422 6.422 11 N -0.361 5.361 12 C 0.016 3.984 13 C 0.037 3.963 14 C -0.219 4.219 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.017 4.017 26 C -0.032 4.032 27 O -0.303 6.303 28 C -0.161 4.161 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.239 0.761 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.098 0.902 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.024 24.445 -1.743 25.237 hybrid contribution 0.511 -0.851 0.892 1.335 sum 6.535 23.594 -0.851 24.497 Atomic orbital electron populations 1.21709 0.79272 1.02880 1.01393 1.46295 1.05076 1.02944 1.80926 1.21581 0.97020 0.84856 1.01098 1.17684 0.91175 0.85588 0.95388 1.20781 0.91931 0.98783 1.08288 1.20815 0.99699 0.91523 0.97804 1.21110 0.92921 0.98473 1.03833 1.19734 0.93549 0.92976 1.02235 1.18298 0.87194 0.83838 0.76821 1.90759 1.13457 1.87710 1.50242 1.45899 1.10749 1.05495 1.73950 1.21389 0.93884 0.80127 1.03018 1.22553 0.91408 0.97008 0.85329 1.22209 1.00860 1.00956 0.97920 1.21308 0.90184 0.82452 1.02769 1.44000 1.37226 1.19976 1.30191 1.19108 0.94089 1.06036 1.19156 0.91468 1.25039 0.95034 0.98875 1.00585 1.70000 0.96858 1.47631 1.40044 0.86359 0.76723 0.80677 0.82952 1.20990 1.21551 1.20869 1.21596 0.93604 0.94703 0.91830 1.23036 0.90018 0.89801 1.00350 1.87817 1.46990 1.52578 1.42945 1.20763 1.00499 0.89603 1.05226 0.93259 0.91532 0.90945 0.92858 0.90901 0.92844 0.85939 0.85536 0.85835 0.76130 0.90716 0.89948 0.93964 0.91852 0.90778 0.88522 0.95216 0.93361 0.95662 0.92078 0.93387 0.90181 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.15 59.85 0.61 1.27 16 2 N -0.64 -5.54 3.41 -187.59 -0.64 -6.18 16 3 C 0.10 0.56 9.40 59.85 0.56 1.12 16 4 C 0.20 2.18 6.55 -83.83 -0.55 1.63 16 5 C -0.18 -1.65 9.31 -39.30 -0.37 -2.01 16 6 C -0.08 -0.75 10.02 -39.67 -0.40 -1.15 16 7 C -0.14 -1.58 9.54 -39.16 -0.37 -1.96 16 8 C -0.08 -1.10 5.87 -104.99 -0.62 -1.71 16 9 C 0.55 8.93 7.77 -12.32 -0.10 8.84 16 10 O -0.54 -10.55 16.35 5.31 0.09 -10.47 16 11 N -0.71 -10.88 5.10 -61.24 -0.31 -11.19 16 12 C 0.14 2.46 4.82 -4.04 -0.02 2.44 16 13 C 0.08 1.46 0.76 -90.47 -0.07 1.39 16 14 C -0.16 -2.79 7.92 37.16 0.29 -2.49 16 15 C 0.16 3.72 4.12 -3.49 -0.01 3.71 16 16 N -0.59 -14.34 2.57 -171.76 -0.44 -14.79 16 17 C -0.25 -6.76 9.65 -15.06 -0.15 -6.90 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.69 11.14 55.49 0.62 -25.07 16 21 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 26 C 0.05 0.79 6.60 37.31 0.25 1.03 16 27 O -0.38 -7.08 9.97 -35.23 -0.35 -7.43 16 28 C -0.14 -1.75 8.75 -38.97 -0.34 -2.10 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 31 H 0.07 0.59 6.19 -51.93 -0.32 0.27 16 32 H 0.05 0.28 7.94 -51.93 -0.41 -0.13 16 33 H 0.07 0.29 7.79 -51.93 -0.40 -0.12 16 34 H 0.05 0.28 7.94 -51.93 -0.41 -0.13 16 35 H 0.12 0.88 6.71 -52.49 -0.35 0.53 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.20 6.40 -52.49 -0.34 0.87 16 38 H 0.40 5.42 5.24 -40.82 -0.21 5.21 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.61 6.88 -51.93 -0.36 0.25 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.38 6.11 -51.93 -0.32 1.07 16 44 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 49 H 0.05 0.80 6.25 -51.93 -0.32 0.47 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.14 1.77 5.73 -52.49 -0.30 1.47 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -32.13 398.80 -9.27 -41.40 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.83 Total: 6.12 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.39 Total: 5.33 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.78 Total: -57.23 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.26 Total: -17.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.13 -9.27 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108364049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.307 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds