Wall clock time and date at job start Wed Apr 1 2020 05:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00294 * 2 1 4 4 C 1.39712 * 119.99978 * 179.97438 * 2 1 3 5 5 C 1.39020 * 120.00453 * 180.02562 * 4 2 1 6 6 C 1.38209 * 120.21969 * 179.97438 * 5 4 2 7 7 C 1.38033 * 120.22502 * 359.72561 * 6 5 4 8 8 C 1.39577 * 120.00223 * 0.55249 * 7 6 5 9 9 C 1.47862 * 120.10423 * 179.71920 * 8 7 6 10 10 O 1.21559 * 119.99772 * 179.72501 * 9 8 7 11 11 N 1.34774 * 120.00512 * 359.72818 * 9 8 7 12 12 C 1.46502 * 120.00289 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47082 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.55421 * 60.12625 * 13 12 11 15 15 C 1.53294 * 109.51225 * 180.25616 * 13 12 11 16 16 N 1.47231 * 108.40580 * 172.23190 * 15 13 12 17 17 C 1.36930 * 121.03478 * 129.45775 * 16 15 13 18 18 H 1.08002 * 120.00530 * 206.18179 * 17 16 15 19 19 C 1.38816 * 119.99608 * 26.18409 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.88476 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.88547 * 19 17 16 22 22 H 1.48497 * 109.46975 * 59.99586 * 21 19 17 23 23 H 1.48495 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47064 * 300.00118 * 21 19 17 25 25 C 1.47154 * 117.98080 * 309.48144 * 16 15 13 26 26 C 1.53298 * 108.41825 * 50.52276 * 25 16 15 27 27 O 1.42959 * 109.51185 * 300.00138 * 13 12 11 28 28 C 1.38645 * 120.00219 * 0.02562 * 4 2 1 29 29 H 1.09002 * 109.47346 * 269.99848 * 1 2 3 30 30 H 1.09006 * 109.46911 * 30.00049 * 1 2 3 31 31 H 1.09004 * 109.47367 * 149.99884 * 1 2 3 32 32 H 1.08994 * 109.47228 * 240.00124 * 3 2 1 33 33 H 1.09000 * 109.46575 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.46920 * 120.00261 * 3 2 1 35 35 H 1.07996 * 119.89558 * 359.96131 * 5 4 2 36 36 H 1.07989 * 119.88611 * 180.02562 * 6 5 4 37 37 H 1.08001 * 119.99875 * 180.29883 * 7 6 5 38 38 H 0.97000 * 119.99622 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46877 * 60.00024 * 12 11 9 40 40 H 1.08999 * 109.47195 * 299.99992 * 12 11 9 41 41 H 1.09004 * 109.46996 * 299.87189 * 14 13 12 42 42 H 1.08996 * 109.47344 * 59.87067 * 14 13 12 43 43 H 1.09000 * 109.46808 * 179.87595 * 14 13 12 44 44 H 1.09001 * 109.68145 * 291.94467 * 15 13 12 45 45 H 1.09001 * 109.68444 * 52.49853 * 15 13 12 46 46 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.68310 * 290.77594 * 25 16 15 48 48 H 1.09005 * 109.67869 * 170.26376 * 25 16 15 49 49 H 1.09001 * 109.51044 * 67.59999 * 26 25 16 50 50 H 1.09000 * 109.51036 * 187.70217 * 26 25 16 51 51 H 1.08001 * 120.11162 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2493 -2.4044 0.0022 7 6 3.5683 -3.6050 0.0084 8 6 2.1726 -3.6159 0.0020 9 6 1.4409 -4.9007 0.0024 10 8 0.2253 -4.9079 0.0019 11 7 2.1216 -6.0640 0.0034 12 6 1.3965 -7.3370 0.0044 13 6 2.3976 -8.4941 0.0061 14 6 3.2752 -8.4101 1.2566 15 6 1.6400 -9.8267 0.0006 16 7 2.6142 -10.9146 -0.1865 17 6 2.6317 -11.9982 0.6504 18 1 3.5463 -12.5542 0.7950 19 6 1.4739 -12.3822 1.3130 20 7 0.3039 -11.9390 0.9043 21 14 1.5763 -13.5280 2.7848 22 1 2.4047 -12.8993 3.8448 23 1 0.2109 -13.7826 3.3100 24 1 2.1951 -14.8127 2.3699 25 6 3.5694 -10.8020 -1.3002 26 6 4.2331 -9.4218 -1.2314 27 8 3.2201 -8.4155 -1.1606 28 6 1.4703 -2.4107 0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5139 32 1 2.8242 1.3264 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8242 1.3264 0.8899 35 1 4.0921 -0.2738 0.0004 36 1 5.3291 -2.3982 0.0030 37 1 4.1155 -4.5361 0.0141 38 1 3.0915 -6.0582 0.0035 39 1 0.7703 -7.3991 -0.8856 40 1 0.7702 -7.3977 0.8944 41 1 3.8170 -7.4643 1.2574 42 1 2.6475 -8.4700 2.1457 43 1 3.9863 -9.2362 1.2575 44 1 1.1214 -9.9580 0.9504 45 1 0.9185 -9.8355 -0.8164 46 1 -0.5051 -12.2070 1.3675 47 1 3.0422 -10.9090 -2.2482 48 1 4.3286 -11.5792 -1.2126 49 1 4.8649 -9.3655 -0.3450 50 1 4.8411 -9.2655 -2.1225 51 1 0.3903 -2.4128 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108364049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:29 Heat of formation + Delta-G solvation = -31.490198 kcal Electronic energy + Delta-G solvation = -30966.807838 eV Core-core repulsion = 26866.595540 eV Total energy + Delta-G solvation = -4100.212297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.43622 -40.61217 -39.69781 -37.01178 -36.55836 -35.94498 -33.37989 -33.18808 -32.15652 -30.99253 -29.57177 -29.14876 -28.05271 -27.30023 -25.70245 -24.99773 -24.27628 -22.77663 -22.34769 -21.13111 -20.29891 -19.22603 -18.84593 -17.54452 -17.35330 -17.08310 -16.77521 -16.53454 -16.29212 -16.15175 -16.03808 -15.84928 -15.57606 -15.32376 -15.19551 -14.78081 -14.65273 -14.53624 -14.39471 -14.05442 -13.53454 -13.45802 -13.27460 -13.17310 -13.06876 -13.00999 -12.91585 -12.75036 -12.57347 -12.47340 -12.43352 -12.17956 -12.00802 -11.95348 -11.83754 -11.20562 -11.00728 -10.82852 -10.74030 -10.48731 -10.22570 -9.86360 -8.71211 -8.26195 -7.88715 -5.35408 -0.07677 0.59718 1.46676 1.48988 1.55720 1.89095 2.01565 2.28784 2.49253 2.79085 2.98161 3.25674 3.50183 3.67823 3.92428 3.94591 4.01267 4.10180 4.13794 4.23222 4.32575 4.36790 4.43340 4.47869 4.50708 4.56513 4.61476 4.63951 4.71572 4.73371 4.78562 4.79757 4.87242 4.92036 4.97284 4.99121 5.05411 5.12894 5.21574 5.24961 5.31934 5.36331 5.43625 5.53176 5.54134 5.62149 5.81232 6.29921 6.31254 6.37749 6.48197 6.52268 7.07399 7.15651 7.77035 8.31374 9.16887 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.002206 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.006713 B =12691.389099 C =13295.543315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.644 5.644 3 C 0.092 3.908 4 C 0.196 3.804 5 C -0.168 4.168 6 C -0.073 4.073 7 C -0.145 4.145 8 C -0.103 4.103 9 C 0.550 3.450 10 O -0.587 6.587 11 N -0.697 5.697 12 C 0.149 3.851 13 C 0.095 3.905 14 C -0.153 4.153 15 C 0.167 3.833 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.101 3.899 26 C 0.052 3.948 27 O -0.385 6.385 28 C -0.160 4.160 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.067 0.933 45 H -0.008 1.008 46 H 0.250 0.750 47 H 0.011 0.989 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 26.599 -1.381 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.356 5.356 3 C -0.050 4.050 4 C 0.094 3.906 5 C -0.191 4.191 6 C -0.092 4.092 7 C -0.166 4.166 8 C -0.106 4.106 9 C 0.339 3.661 10 O -0.468 6.468 11 N -0.349 5.349 12 C 0.024 3.976 13 C 0.054 3.946 14 C -0.211 4.211 15 C 0.040 3.960 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.092 0.908 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.201 1.201 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.304 6.304 28 C -0.183 4.183 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.010 0.990 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.746 26.825 -1.465 28.578 hybrid contribution -0.602 -1.515 0.710 1.778 sum 9.144 25.310 -0.755 26.922 Atomic orbital electron populations 1.21773 0.79056 1.03243 1.01512 1.46566 1.05582 1.03303 1.80169 1.21796 0.97570 0.83886 1.01776 1.17843 0.92040 0.85639 0.95077 1.21163 0.91296 1.00171 1.06478 1.21210 1.01349 0.90570 0.96022 1.21300 0.91684 1.00081 1.03522 1.19569 0.94657 0.91361 1.05030 1.18834 0.86850 0.84858 0.75560 1.90728 1.15487 1.88340 1.52287 1.45689 1.11128 1.04378 1.73707 1.21077 0.93590 0.81227 1.01726 1.22168 0.91377 0.94412 0.86655 1.22116 1.00240 1.02408 0.96309 1.21065 0.90124 0.85112 0.99663 1.44250 1.37720 1.19812 1.31253 1.19474 0.94154 1.06212 1.18997 0.90769 1.25807 0.94764 1.00887 1.03201 1.70177 0.97327 1.49470 1.41306 0.85346 0.76169 0.79071 0.79909 1.20078 1.22454 1.20060 1.21827 0.93080 0.97647 0.89846 1.23125 0.89488 0.87000 1.02886 1.87829 1.47180 1.52778 1.42663 1.20732 0.99955 0.90627 1.07031 0.93279 0.89142 0.92610 0.92033 0.89097 0.92099 0.83171 0.82120 0.84410 0.74690 0.92694 0.90882 0.90435 0.92667 0.91731 0.91449 0.98984 0.94092 0.97058 0.90885 0.91952 0.86358 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.15 127.77 1.30 2.53 16 2 N -0.64 -10.11 3.41 -747.40 -2.55 -12.65 16 3 C 0.09 0.77 9.40 127.77 1.20 1.97 16 4 C 0.20 3.94 6.55 38.17 0.25 4.19 16 5 C -0.17 -2.62 9.31 22.45 0.21 -2.41 16 6 C -0.07 -1.10 10.02 22.21 0.22 -0.87 16 7 C -0.15 -2.88 9.54 22.54 0.22 -2.66 16 8 C -0.10 -2.75 5.87 -20.11 -0.12 -2.87 16 9 C 0.55 18.31 7.77 86.79 0.67 18.99 16 10 O -0.59 -24.24 16.35 -3.90 -0.06 -24.31 16 11 N -0.70 -21.28 5.10 -465.94 -2.38 -23.66 16 12 C 0.15 5.44 4.82 86.38 0.42 5.85 16 13 C 0.10 3.57 0.76 -10.69 -0.01 3.57 16 14 C -0.15 -5.07 7.92 71.98 0.57 -4.50 16 15 C 0.17 8.15 4.12 86.34 0.36 8.51 16 16 N -0.61 -29.88 2.57 -697.32 -1.79 -31.67 16 17 C -0.26 -13.82 9.65 84.04 0.81 -13.01 16 18 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 19 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 20 N -0.94 -55.69 11.14 21.65 0.24 -55.45 16 21 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.10 4.07 6.73 86.35 0.58 4.65 16 26 C 0.05 1.65 6.60 72.08 0.48 2.13 16 27 O -0.39 -13.63 9.97 -148.98 -1.49 -15.12 16 28 C -0.16 -4.14 8.75 22.67 0.20 -3.94 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.81 7.92 -2.38 -0.02 0.79 16 31 H 0.06 0.97 6.19 -2.39 -0.01 0.96 16 32 H 0.06 0.43 7.94 -2.39 -0.02 0.42 16 33 H 0.09 0.44 7.79 -2.39 -0.02 0.42 16 34 H 0.06 0.44 7.94 -2.39 -0.02 0.42 16 35 H 0.15 1.47 6.71 -2.91 -0.02 1.45 16 36 H 0.16 1.32 8.06 -2.92 -0.02 1.30 16 37 H 0.14 2.24 6.40 -2.91 -0.02 2.22 16 38 H 0.41 10.40 5.24 -92.71 -0.49 9.91 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.08 2.01 6.88 -2.38 -0.02 1.99 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 2.28 6.11 -2.39 -0.01 2.27 16 44 H 0.07 3.67 6.14 -2.39 -0.01 3.66 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.07 2.72 7.96 -2.38 -0.02 2.70 16 49 H 0.06 1.85 6.25 -2.39 -0.01 1.83 16 50 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 51 H 0.12 3.36 5.73 -2.91 -0.02 3.34 16 Total: -1.00 -73.45 398.80 2.23 -71.22 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.46 Total: 25.49 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 7.77 Total: 19.71 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.48 Total: -123.43 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.55 Total: -39.42 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.45 2.23 -71.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108364049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.729 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds