Wall clock time and date at job start Wed Apr 1 2020 04:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30175 * 126.80405 * 2 1 4 4 O 1.20920 * 111.60154 * 180.24931 * 3 2 1 5 5 C 1.34036 * 111.57097 * 359.74222 * 4 3 2 6 6 C 1.50704 * 126.78060 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44464 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00563 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47466 * 90.00188 * 8 7 5 10 10 H 1.08998 * 109.46682 * 305.00182 * 9 8 7 11 11 C 1.52995 * 109.46688 * 64.99641 * 9 8 7 12 12 C 1.50695 * 109.46959 * 184.99615 * 9 8 7 13 13 O 1.21278 * 120.00677 * 0.02562 * 12 9 8 14 14 N 1.34780 * 119.99418 * 179.97438 * 12 9 8 15 15 C 1.46504 * 119.99636 * 180.02562 * 14 12 9 16 16 H 1.08997 * 110.68408 * 37.04392 * 15 14 12 17 17 C 1.55873 * 110.09633 * 160.90052 * 15 14 12 18 18 C 1.55851 * 103.52613 * 118.86195 * 17 15 14 19 19 H 1.09007 * 116.12703 * 158.54151 * 18 17 15 20 20 C 1.55839 * 105.06766 * 287.57505 * 18 17 15 21 21 C 1.54852 * 103.44633 * 71.82152 * 20 18 17 22 22 C 1.55840 * 103.44664 * 0.02562 * 21 20 18 23 23 H 1.08992 * 115.56203 * 158.80687 * 22 21 20 24 24 N 1.50238 * 101.04815 * 32.33817 * 18 17 15 25 25 C 1.36944 * 130.84006 * 126.05154 * 24 18 17 26 26 H 1.07999 * 119.99853 * 165.88048 * 25 24 18 27 27 C 1.38811 * 119.99767 * 345.88485 * 25 24 18 28 28 N 1.31618 * 119.99826 * 162.48786 * 27 25 24 29 29 Si 1.86806 * 120.00106 * 342.48391 * 27 25 24 30 30 H 1.48500 * 109.46735 * 85.55183 * 29 27 25 31 31 H 1.48496 * 109.46879 * 205.55184 * 29 27 25 32 32 H 1.48499 * 109.46981 * 325.54950 * 29 27 25 33 33 H 1.08999 * 109.47401 * 270.17856 * 1 2 3 34 34 H 1.09002 * 109.46836 * 30.17437 * 1 2 3 35 35 H 1.09001 * 109.47281 * 150.17004 * 1 2 3 36 36 H 1.09004 * 109.46642 * 269.99736 * 6 5 4 37 37 H 1.09002 * 109.47158 * 29.99475 * 6 5 4 38 38 H 1.09003 * 109.47435 * 149.99274 * 6 5 4 39 39 H 1.09008 * 109.47007 * 329.99773 * 8 7 5 40 40 H 1.09010 * 109.47073 * 210.00416 * 8 7 5 41 41 H 1.09006 * 109.47428 * 60.00665 * 11 9 8 42 42 H 1.09006 * 109.47350 * 179.97438 * 11 9 8 43 43 H 1.09004 * 109.47727 * 299.99927 * 11 9 8 44 44 H 0.97003 * 120.00537 * 0.02562 * 14 12 9 45 45 H 1.09003 * 111.10356 * 0.10288 * 17 15 14 46 46 H 1.08994 * 110.21172 * 237.20136 * 17 15 14 47 47 H 1.09003 * 110.62734 * 190.31362 * 20 18 17 48 48 H 1.09003 * 110.62649 * 313.17527 * 20 18 17 49 49 H 1.09002 * 110.62219 * 241.51098 * 21 20 18 50 50 H 1.09000 * 110.62209 * 118.49383 * 21 20 18 51 51 H 0.97004 * 119.99932 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 -0.0049 5 6 3.6024 -0.6069 -0.0033 6 6 4.9021 -1.3698 -0.0075 7 6 2.3539 -1.1321 0.0040 8 6 1.9590 -2.5864 0.0081 9 6 1.8329 -3.0767 1.4520 10 1 2.7620 -2.8771 1.9858 11 6 0.6809 -2.3424 2.1410 12 6 1.5587 -4.5585 1.4571 13 8 1.4731 -5.1631 0.4093 14 7 1.4097 -5.2120 2.6264 15 6 1.1437 -6.6527 2.6315 16 1 1.6964 -7.1491 1.8338 17 6 1.4858 -7.2556 4.0276 18 6 0.1229 -7.8281 4.5212 19 1 0.1763 -8.6003 5.2888 20 6 -0.7343 -6.5781 4.8835 21 6 -1.0795 -5.9659 3.5037 22 6 -0.3844 -6.9298 2.4955 23 1 -0.7774 -6.9104 1.4791 24 7 -0.5046 -8.2402 3.2198 25 6 -1.0265 -9.4408 2.8178 26 1 -1.6389 -9.4931 1.9298 27 6 -0.7682 -10.5904 3.5516 28 7 -1.5207 -11.6579 3.3888 29 14 0.6473 -10.6224 4.7702 30 1 0.1903 -10.0780 6.0740 31 1 1.1114 -12.0211 4.9530 32 1 1.7653 -9.7937 4.2521 33 1 -0.3634 0.0032 1.0276 34 1 -0.3633 0.8884 -0.5166 35 1 -0.3634 -0.8915 -0.5112 36 1 5.2110 -1.5554 -1.0362 37 1 5.6682 -0.7852 0.5021 38 1 4.7672 -2.3203 0.5087 39 1 2.7199 -3.1710 -0.5090 40 1 1.0021 -2.7045 -0.5006 41 1 -0.2482 -2.5420 1.6071 42 1 0.5907 -2.6920 3.1695 43 1 0.8792 -1.2706 2.1372 44 1 1.4785 -4.7286 3.4645 45 1 1.8484 -6.4861 4.7092 46 1 2.2219 -8.0525 3.9235 47 1 -1.6416 -6.8741 5.4101 48 1 -0.1552 -5.8762 5.4837 49 1 -0.6706 -4.9592 3.4172 50 1 -2.1580 -5.9583 3.3460 51 1 -1.3401 -12.4614 3.9013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109815740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:49 Heat of formation + Delta-G solvation = 66.293706 kcal Electronic energy + Delta-G solvation = -31767.170138 eV Core-core repulsion = 27671.198069 eV Total energy + Delta-G solvation = -4095.972069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.17990 -40.41765 -38.94745 -36.46862 -34.18322 -34.10411 -33.13511 -32.36362 -29.82818 -29.45124 -29.20656 -28.66601 -28.03238 -26.91661 -24.55732 -23.66262 -21.96175 -21.39434 -20.53205 -20.23450 -19.63458 -18.90013 -17.99019 -17.50840 -17.16238 -16.67626 -15.97777 -15.56226 -15.48388 -14.95100 -14.46890 -14.31938 -14.11351 -13.79848 -13.67572 -13.46347 -13.43279 -13.14510 -13.04266 -12.92151 -12.79619 -12.54052 -12.41407 -12.23333 -12.22094 -11.94664 -11.68055 -11.43014 -11.33183 -11.19316 -11.15031 -11.03988 -10.87814 -10.46525 -10.28194 -10.09069 -9.82869 -9.66895 -9.60303 -9.35940 -9.29688 -8.86138 -8.69762 -7.21872 -5.93055 -3.23100 1.18638 1.92295 2.73471 2.83485 3.23763 3.29113 3.39977 3.45527 3.92486 4.16768 4.46518 4.49648 4.51997 4.60473 4.70109 4.80475 4.86592 4.98136 5.04298 5.09252 5.16659 5.18050 5.19205 5.23090 5.36329 5.36390 5.45914 5.49531 5.50010 5.59555 5.61233 5.63463 5.69803 5.72224 5.80393 5.81326 5.89353 5.91630 5.96851 6.02265 6.20260 6.27178 6.37367 6.43664 6.60148 6.67373 6.84869 6.89261 7.38139 7.66330 8.03215 8.30897 8.36411 8.71448 9.62840 10.22081 11.23860 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.002445 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.530291 B =11448.598085 C =11770.447077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.075 4.075 7 C -0.193 4.193 8 C -0.022 4.022 9 C -0.105 4.105 10 H 0.094 0.906 11 C -0.146 4.146 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.713 5.713 15 C 0.129 3.871 16 H 0.090 0.910 17 C -0.143 4.143 18 C 0.113 3.887 19 H 0.099 0.901 20 C -0.129 4.129 21 C -0.128 4.128 22 C 0.137 3.863 23 H 0.094 0.906 24 N -0.603 5.603 25 C -0.224 4.224 26 H 0.097 0.903 27 C 0.015 3.985 28 N -0.917 5.917 29 Si 0.882 3.118 30 H -0.288 1.288 31 H -0.305 1.305 32 H -0.262 1.262 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.395 0.605 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.243 23.834 -1.911 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.095 4.095 6 C -0.133 4.133 7 C -0.197 4.197 8 C -0.061 4.061 9 C -0.126 4.126 10 H 0.112 0.888 11 C -0.204 4.204 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.364 5.364 15 C 0.023 3.977 16 H 0.108 0.892 17 C -0.183 4.183 18 C 0.006 3.994 19 H 0.116 0.884 20 C -0.169 4.169 21 C -0.167 4.167 22 C 0.028 3.972 23 H 0.112 0.888 24 N -0.326 5.326 25 C -0.351 4.351 26 H 0.114 0.886 27 C -0.182 4.182 28 N -0.561 5.561 29 Si 0.715 3.285 30 H -0.217 1.217 31 H -0.234 1.234 32 H -0.187 1.187 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.229 0.771 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.850 24.314 -2.712 26.374 hybrid contribution 0.737 -0.714 1.239 1.609 sum 10.588 23.600 -1.473 25.908 Atomic orbital electron populations 1.20274 0.86010 1.03863 1.03537 1.23450 0.98890 0.88450 1.02503 1.73846 0.89305 1.24002 1.20442 1.84791 1.21655 1.22573 1.68005 1.24281 0.98295 0.83762 1.03191 1.20363 0.90012 0.98642 1.04249 1.20965 0.91482 0.97556 1.09683 1.19693 1.03728 0.87318 0.95321 1.21276 1.01124 0.92253 0.97955 0.88830 1.21896 0.97586 1.00477 1.00436 1.20461 0.76661 0.88924 0.84065 1.90723 1.50340 1.68988 1.31413 1.46244 1.72087 1.10065 1.08049 1.22821 0.98714 0.78222 0.97929 0.89188 1.23577 0.99402 1.00032 0.95280 1.23309 0.91143 0.94385 0.90519 0.88384 1.22911 1.00057 0.97332 0.96560 1.22878 1.00263 0.97702 0.95869 1.23198 0.92176 0.86166 0.95621 0.88771 1.46807 1.69730 1.07523 1.08517 1.18681 1.23582 0.81584 1.11205 0.88568 1.24856 0.99109 0.95287 0.98984 1.69774 1.38634 1.03816 1.43905 0.87023 0.85172 0.75609 0.80691 1.21748 1.23354 1.18715 0.89934 0.90677 0.89767 0.89321 0.89841 0.88956 0.89552 0.89595 0.91572 0.91978 0.91619 0.77078 0.91798 0.90721 0.92074 0.92831 0.92395 0.92280 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.55 36.01 0.34 -0.24 16 2 C 0.03 0.25 6.42 -82.10 -0.53 -0.27 16 3 N -0.37 -4.22 12.07 33.42 0.40 -3.82 16 4 O 0.09 0.98 11.20 17.19 0.19 1.17 16 5 C -0.03 -0.27 7.49 -35.30 -0.26 -0.53 16 6 C -0.08 -0.38 10.25 36.01 0.37 -0.01 16 7 C -0.19 -1.74 4.93 -104.42 -0.52 -2.26 16 8 C -0.02 -0.20 4.29 -27.88 -0.12 -0.32 16 9 C -0.10 -0.91 2.71 -91.78 -0.25 -1.16 16 10 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 11 C -0.15 -1.11 8.26 37.15 0.31 -0.80 16 12 C 0.51 6.40 7.15 -10.99 -0.08 6.32 16 13 O -0.54 -8.98 15.65 5.56 0.09 -8.89 16 14 N -0.71 -8.69 3.56 -50.84 -0.18 -8.88 16 15 C 0.13 2.13 3.17 -64.85 -0.21 1.92 16 16 H 0.09 1.71 7.71 -51.93 -0.40 1.31 16 17 C -0.14 -2.38 5.99 -23.67 -0.14 -2.52 16 18 C 0.11 2.24 3.57 -62.80 -0.22 2.01 16 19 H 0.10 2.14 3.48 -51.93 -0.18 1.96 16 20 C -0.13 -2.11 6.44 -24.24 -0.16 -2.27 16 21 C -0.13 -2.02 6.34 -24.24 -0.15 -2.18 16 22 C 0.14 2.60 5.30 -62.79 -0.33 2.26 16 23 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 24 N -0.60 -13.95 2.79 -145.81 -0.41 -14.36 16 25 C -0.22 -6.25 10.97 -15.06 -0.17 -6.42 16 26 H 0.10 2.88 8.06 -52.49 -0.42 2.46 16 27 C 0.02 0.44 5.50 -17.43 -0.10 0.34 16 28 N -0.92 -28.24 13.97 55.49 0.78 -27.47 16 29 Si 0.88 21.73 24.68 -169.99 -4.19 17.54 16 30 H -0.29 -6.86 6.39 56.52 0.36 -6.50 16 31 H -0.31 -7.78 7.11 56.52 0.40 -7.38 16 32 H -0.26 -6.02 4.90 56.52 0.28 -5.74 16 33 H 0.08 0.52 7.22 -51.93 -0.37 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 39 H 0.09 0.82 7.89 -51.92 -0.41 0.41 16 40 H 0.09 0.84 7.65 -51.92 -0.40 0.45 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 43 H 0.06 0.48 5.45 -51.93 -0.28 0.20 16 44 H 0.39 3.74 7.44 -40.82 -0.30 3.44 16 45 H 0.06 0.83 7.34 -51.93 -0.38 0.45 16 46 H 0.07 1.36 6.31 -51.93 -0.33 1.03 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 49 H 0.06 0.75 6.56 -51.93 -0.34 0.40 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -33.70 390.28 -7.77 -41.47 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.12 Total: 3.47 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.21 Total: -6.12 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.59 Total: -54.52 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.28 Total: -7.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.19 Total: 17.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.70 -7.77 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109815740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.765 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds