Wall clock time and date at job start Wed Apr 1 2020 04:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30175 * 126.80405 * 2 1 4 4 O 1.20920 * 111.60154 * 180.24931 * 3 2 1 5 5 C 1.34036 * 111.57097 * 359.74222 * 4 3 2 6 6 C 1.50704 * 126.78060 * 180.02562 * 5 4 3 7 7 C 1.35453 * 106.44464 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00563 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47466 * 90.00188 * 8 7 5 10 10 H 1.08998 * 109.46682 * 305.00182 * 9 8 7 11 11 C 1.52995 * 109.46688 * 64.99641 * 9 8 7 12 12 C 1.50695 * 109.46959 * 184.99615 * 9 8 7 13 13 O 1.21278 * 120.00677 * 0.02562 * 12 9 8 14 14 N 1.34780 * 119.99418 * 179.97438 * 12 9 8 15 15 C 1.46504 * 119.99636 * 180.02562 * 14 12 9 16 16 H 1.08997 * 110.68408 * 37.04392 * 15 14 12 17 17 C 1.55873 * 110.09633 * 160.90052 * 15 14 12 18 18 C 1.55851 * 103.52613 * 118.86195 * 17 15 14 19 19 H 1.09007 * 116.12703 * 158.54151 * 18 17 15 20 20 C 1.55839 * 105.06766 * 287.57505 * 18 17 15 21 21 C 1.54852 * 103.44633 * 71.82152 * 20 18 17 22 22 C 1.55840 * 103.44664 * 0.02562 * 21 20 18 23 23 H 1.08992 * 115.56203 * 158.80687 * 22 21 20 24 24 N 1.50238 * 101.04815 * 32.33817 * 18 17 15 25 25 C 1.36944 * 130.84006 * 126.05154 * 24 18 17 26 26 H 1.07999 * 119.99853 * 165.88048 * 25 24 18 27 27 C 1.38811 * 119.99767 * 345.88485 * 25 24 18 28 28 N 1.31618 * 119.99826 * 162.48786 * 27 25 24 29 29 Si 1.86806 * 120.00106 * 342.48391 * 27 25 24 30 30 H 1.48500 * 109.46735 * 85.55183 * 29 27 25 31 31 H 1.48496 * 109.46879 * 205.55184 * 29 27 25 32 32 H 1.48499 * 109.46981 * 325.54950 * 29 27 25 33 33 H 1.08999 * 109.47401 * 270.17856 * 1 2 3 34 34 H 1.09002 * 109.46836 * 30.17437 * 1 2 3 35 35 H 1.09001 * 109.47281 * 150.17004 * 1 2 3 36 36 H 1.09004 * 109.46642 * 269.99736 * 6 5 4 37 37 H 1.09002 * 109.47158 * 29.99475 * 6 5 4 38 38 H 1.09003 * 109.47435 * 149.99274 * 6 5 4 39 39 H 1.09008 * 109.47007 * 329.99773 * 8 7 5 40 40 H 1.09010 * 109.47073 * 210.00416 * 8 7 5 41 41 H 1.09006 * 109.47428 * 60.00665 * 11 9 8 42 42 H 1.09006 * 109.47350 * 179.97438 * 11 9 8 43 43 H 1.09004 * 109.47727 * 299.99927 * 11 9 8 44 44 H 0.97003 * 120.00537 * 0.02562 * 14 12 9 45 45 H 1.09003 * 111.10356 * 0.10288 * 17 15 14 46 46 H 1.08994 * 110.21172 * 237.20136 * 17 15 14 47 47 H 1.09003 * 110.62734 * 190.31362 * 20 18 17 48 48 H 1.09003 * 110.62649 * 313.17527 * 20 18 17 49 49 H 1.09002 * 110.62219 * 241.51098 * 21 20 18 50 50 H 1.09000 * 110.62209 * 118.49383 * 21 20 18 51 51 H 0.97004 * 119.99932 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7252 -0.0049 5 6 3.6024 -0.6069 -0.0033 6 6 4.9021 -1.3698 -0.0075 7 6 2.3539 -1.1321 0.0040 8 6 1.9590 -2.5864 0.0081 9 6 1.8329 -3.0767 1.4520 10 1 2.7620 -2.8771 1.9858 11 6 0.6809 -2.3424 2.1410 12 6 1.5587 -4.5585 1.4571 13 8 1.4731 -5.1631 0.4093 14 7 1.4097 -5.2120 2.6264 15 6 1.1437 -6.6527 2.6315 16 1 1.6964 -7.1491 1.8338 17 6 1.4858 -7.2556 4.0276 18 6 0.1229 -7.8281 4.5212 19 1 0.1763 -8.6003 5.2888 20 6 -0.7343 -6.5781 4.8835 21 6 -1.0795 -5.9659 3.5037 22 6 -0.3844 -6.9298 2.4955 23 1 -0.7774 -6.9104 1.4791 24 7 -0.5046 -8.2402 3.2198 25 6 -1.0265 -9.4408 2.8178 26 1 -1.6389 -9.4931 1.9298 27 6 -0.7682 -10.5904 3.5516 28 7 -1.5207 -11.6579 3.3888 29 14 0.6473 -10.6224 4.7702 30 1 0.1903 -10.0780 6.0740 31 1 1.1114 -12.0211 4.9530 32 1 1.7653 -9.7937 4.2521 33 1 -0.3634 0.0032 1.0276 34 1 -0.3633 0.8884 -0.5166 35 1 -0.3634 -0.8915 -0.5112 36 1 5.2110 -1.5554 -1.0362 37 1 5.6682 -0.7852 0.5021 38 1 4.7672 -2.3203 0.5087 39 1 2.7199 -3.1710 -0.5090 40 1 1.0021 -2.7045 -0.5006 41 1 -0.2482 -2.5420 1.6071 42 1 0.5907 -2.6920 3.1695 43 1 0.8792 -1.2706 2.1372 44 1 1.4785 -4.7286 3.4645 45 1 1.8484 -6.4861 4.7092 46 1 2.2219 -8.0525 3.9235 47 1 -1.6416 -6.8741 5.4101 48 1 -0.1552 -5.8762 5.4837 49 1 -0.6706 -4.9592 3.4172 50 1 -2.1580 -5.9583 3.3460 51 1 -1.3401 -12.4614 3.9013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109815740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:48 Heat of formation + Delta-G solvation = 44.319068 kcal Electronic energy + Delta-G solvation = -31768.123030 eV Core-core repulsion = 27671.198069 eV Total energy + Delta-G solvation = -4096.924961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.88658 -41.67025 -40.16715 -37.24134 -35.48793 -34.81356 -34.39898 -33.71536 -31.49383 -30.88349 -29.93709 -29.67687 -28.93397 -27.52437 -26.06958 -24.85110 -23.06988 -22.40964 -21.94668 -21.14897 -20.54732 -20.33949 -19.02469 -18.68327 -18.26663 -17.70090 -17.47662 -16.86050 -16.52266 -16.07749 -15.38328 -15.32295 -15.23356 -14.95003 -14.78231 -14.59377 -14.28252 -14.15462 -13.95951 -13.79512 -13.64353 -13.45865 -13.38882 -13.33711 -13.11136 -13.00662 -12.92671 -12.81375 -12.48731 -12.46570 -12.29160 -12.20389 -12.08390 -11.80749 -11.71585 -11.40618 -11.32922 -10.98950 -10.82033 -10.79087 -10.63369 -10.01940 -9.99466 -9.12396 -8.13025 -5.38574 0.52914 1.23288 1.25856 1.40259 1.50634 1.74637 2.17708 2.30893 2.43784 3.01955 3.20887 3.28499 3.56349 3.69690 3.76922 3.83449 3.87421 3.95712 4.00988 4.17348 4.25003 4.28041 4.31812 4.43075 4.47374 4.49767 4.57062 4.65279 4.67435 4.71289 4.71613 4.75151 4.79968 4.88726 4.91218 4.94059 4.96686 5.02896 5.04887 5.11354 5.14175 5.20336 5.27584 5.33050 5.35691 5.38360 5.41885 5.61845 5.69811 6.12571 6.63086 6.69894 7.35292 7.39998 7.48464 8.21890 9.08177 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.002445 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.530291 B =11448.598085 C =11770.447077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.023 3.977 3 N -0.400 5.400 4 O 0.081 5.919 5 C -0.024 4.024 6 C -0.077 4.077 7 C -0.202 4.202 8 C -0.017 4.017 9 C -0.091 4.091 10 H 0.120 0.880 11 C -0.146 4.146 12 C 0.515 3.485 13 O -0.584 6.584 14 N -0.698 5.698 15 C 0.147 3.853 16 H 0.059 0.941 17 C -0.131 4.131 18 C 0.095 3.905 19 H 0.081 0.919 20 C -0.120 4.120 21 C -0.114 4.114 22 C 0.124 3.876 23 H 0.065 0.935 24 N -0.632 5.632 25 C -0.213 4.213 26 H 0.051 0.949 27 C -0.054 4.054 28 N -0.972 5.972 29 Si 0.951 3.049 30 H -0.271 1.271 31 H -0.320 1.320 32 H -0.235 1.235 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.416 0.584 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.045 0.955 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.720 27.282 0.621 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 N -0.109 5.109 4 O 0.019 5.981 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.206 4.206 8 C -0.055 4.055 9 C -0.112 4.112 10 H 0.138 0.862 11 C -0.203 4.203 12 C 0.303 3.697 13 O -0.464 6.464 14 N -0.351 5.351 15 C 0.039 3.961 16 H 0.077 0.923 17 C -0.170 4.170 18 C -0.009 4.009 19 H 0.099 0.901 20 C -0.159 4.159 21 C -0.153 4.153 22 C 0.017 3.983 23 H 0.083 0.917 24 N -0.356 5.356 25 C -0.341 4.341 26 H 0.068 0.932 27 C -0.247 4.247 28 N -0.621 5.621 29 Si 0.782 3.218 30 H -0.199 1.199 31 H -0.250 1.250 32 H -0.159 1.159 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.135 0.865 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.064 0.936 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.368 27.872 -0.147 30.493 hybrid contribution -0.108 -1.714 0.286 1.741 sum 12.259 26.157 0.139 28.888 Atomic orbital electron populations 1.20374 0.84771 1.04170 1.04488 1.23841 0.99845 0.88398 1.01523 1.73847 0.89843 1.25021 1.22235 1.84761 1.21414 1.23546 1.68363 1.24870 0.99430 0.83168 1.01284 1.20561 0.88811 0.98760 1.05256 1.20925 0.91703 0.97162 1.10848 1.19584 1.02943 0.87319 0.95639 1.21237 1.02921 0.88951 0.98120 0.86188 1.21923 0.96580 1.00679 1.01153 1.21140 0.75136 0.90287 0.83153 1.90726 1.52126 1.70297 1.33215 1.45962 1.71742 1.08138 1.09222 1.22222 0.95821 0.80662 0.97354 0.92255 1.23500 0.96953 1.00948 0.95605 1.23580 0.93402 0.95433 0.88527 0.90145 1.22905 0.99574 0.96490 0.96897 1.22804 0.99377 0.98676 0.94470 1.23364 0.94720 0.85244 0.95012 0.91685 1.46894 1.70340 1.07024 1.11325 1.18519 1.22177 0.84110 1.09313 0.93154 1.25625 1.01942 0.94884 1.02204 1.69949 1.40945 1.04750 1.46447 0.85920 0.82024 0.75019 0.78875 1.19851 1.25029 1.15901 0.88579 0.90606 0.89240 0.88365 0.88224 0.87973 0.90186 0.90776 0.92186 0.90104 0.91045 0.74556 0.86505 0.92117 0.93419 0.87592 0.88294 0.93607 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.55 71.24 0.68 -0.37 16 2 C 0.02 0.40 6.42 43.58 0.28 0.68 16 3 N -0.40 -8.66 12.07 -49.57 -0.60 -9.26 16 4 O 0.08 1.56 11.20 71.67 0.80 2.37 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.08 -0.55 10.25 71.24 0.73 0.18 16 7 C -0.20 -3.22 4.93 -19.74 -0.10 -3.32 16 8 C -0.02 -0.27 4.29 29.85 0.13 -0.14 16 9 C -0.09 -1.24 2.71 -11.54 -0.03 -1.27 16 10 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 11 C -0.15 -1.56 8.26 71.98 0.59 -0.97 16 12 C 0.52 11.31 7.15 87.65 0.63 11.94 16 13 O -0.58 -19.00 15.65 -3.02 -0.05 -19.05 16 14 N -0.70 -13.96 3.56 -433.14 -1.54 -15.50 16 15 C 0.15 4.48 3.17 46.99 0.15 4.63 16 16 H 0.06 2.22 7.71 -2.39 -0.02 2.20 16 17 C -0.13 -3.76 5.99 32.57 0.20 -3.57 16 18 C 0.10 3.51 3.57 46.23 0.17 3.67 16 19 H 0.08 3.27 3.48 -2.38 -0.01 3.26 16 20 C -0.12 -3.38 6.44 32.21 0.21 -3.17 16 21 C -0.11 -3.26 6.34 32.21 0.20 -3.05 16 22 C 0.12 4.63 5.30 46.25 0.25 4.87 16 23 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 24 N -0.63 -29.37 2.79 -615.22 -1.72 -31.09 16 25 C -0.21 -12.48 10.97 84.03 0.92 -11.56 16 26 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 27 C -0.05 -3.23 5.50 84.86 0.47 -2.76 16 28 N -0.97 -63.19 13.97 21.65 0.30 -62.88 16 29 Si 0.95 45.71 24.68 68.60 1.69 47.40 16 30 H -0.27 -12.10 6.39 99.48 0.64 -11.46 16 31 H -0.32 -16.06 7.11 99.48 0.71 -15.36 16 32 H -0.24 -10.12 4.90 99.48 0.49 -9.63 16 33 H 0.10 0.98 7.22 -2.39 -0.02 0.96 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.05 7.65 -2.39 -0.02 1.04 16 36 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.56 8.05 -2.39 -0.02 0.54 16 39 H 0.08 1.39 7.89 -2.38 -0.02 1.38 16 40 H 0.07 1.37 7.65 -2.38 -0.02 1.35 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 0.59 7.57 -2.38 -0.02 0.57 16 43 H 0.07 0.74 5.45 -2.38 -0.01 0.73 16 44 H 0.42 5.01 7.44 -92.71 -0.69 4.32 16 45 H 0.12 2.16 7.34 -2.39 -0.02 2.14 16 46 H 0.06 1.96 6.31 -2.39 -0.02 1.94 16 47 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.11 1.95 7.82 -2.39 -0.02 1.93 16 49 H 0.10 2.00 6.56 -2.39 -0.02 1.98 16 50 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -81.17 390.28 4.52 -76.65 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.03 Total: 15.75 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.65 Total: -4.37 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.55 Total: -118.74 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.76 Total: -16.68 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.69 Total: 47.40 kcal Total: -81.17 4.52 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109815740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.966 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds