Wall clock time and date at job start Wed Apr 1 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30171 * 126.80267 * 2 1 4 4 O 1.20927 * 111.60412 * 180.25841 * 3 2 1 5 5 C 1.34046 * 111.56431 * 359.74335 * 4 3 2 6 6 C 1.50694 * 126.77237 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.44773 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.00855 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46613 * 0.02562 * 8 7 5 10 10 C 1.53006 * 109.47239 * 119.99941 * 8 7 5 11 11 C 1.52997 * 109.47466 * 240.00229 * 8 7 5 12 12 C 1.50699 * 109.47337 * 174.99820 * 11 8 7 13 13 O 1.21281 * 119.99984 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00153 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00336 * 180.02562 * 14 12 11 16 16 H 1.09011 * 110.55739 * 32.09858 * 15 14 12 17 17 C 1.54852 * 110.62514 * 269.02963 * 15 14 12 18 18 C 1.55845 * 103.44253 * 241.50391 * 17 15 14 19 19 H 1.09001 * 116.12597 * 159.14840 * 18 17 15 20 20 C 1.55844 * 105.06780 * 288.17621 * 18 17 15 21 21 C 1.54854 * 103.44360 * 71.82370 * 20 18 17 22 22 C 1.55839 * 110.62816 * 154.99966 * 15 14 12 23 23 H 1.09001 * 115.56268 * 319.67965 * 22 15 14 24 24 N 1.50232 * 101.04981 * 32.94175 * 18 17 15 25 25 C 1.36940 * 130.84275 * 126.00974 * 24 18 17 26 26 H 1.07996 * 120.00672 * 180.02562 * 25 24 18 27 27 C 1.38819 * 119.99552 * 0.02562 * 25 24 18 28 28 N 1.31617 * 120.00259 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 119.99857 * 179.97438 * 27 25 24 30 30 H 1.48506 * 109.46913 * 0.02562 * 29 27 25 31 31 H 1.48503 * 109.47036 * 119.99596 * 29 27 25 32 32 H 1.48492 * 109.47115 * 240.00154 * 29 27 25 33 33 H 1.09011 * 109.46542 * 270.16742 * 1 2 3 34 34 H 1.09000 * 109.47105 * 30.15857 * 1 2 3 35 35 H 1.08992 * 109.47534 * 150.16663 * 1 2 3 36 36 H 1.09007 * 109.46969 * 269.99353 * 6 5 4 37 37 H 1.09001 * 109.47512 * 29.99736 * 6 5 4 38 38 H 1.08998 * 109.47055 * 150.00087 * 6 5 4 39 39 H 1.09001 * 109.47002 * 60.00070 * 10 8 7 40 40 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 41 41 H 1.09000 * 109.47050 * 300.00336 * 10 8 7 42 42 H 1.09002 * 109.47196 * 294.99972 * 11 8 7 43 43 H 1.09004 * 109.46881 * 54.99487 * 11 8 7 44 44 H 0.97004 * 119.99957 * 359.97438 * 14 12 11 45 45 H 1.08998 * 110.62947 * 0.02562 * 17 15 14 46 46 H 1.09010 * 110.62633 * 123.02163 * 17 15 14 47 47 H 1.08998 * 110.62364 * 190.31412 * 20 18 17 48 48 H 1.09003 * 110.62624 * 313.17330 * 20 18 17 49 49 H 1.08991 * 110.62635 * 241.51026 * 21 20 18 50 50 H 1.08999 * 110.62063 * 118.49021 * 21 20 18 51 51 H 0.96999 * 120.00404 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0051 5 6 3.6024 -0.6069 -0.0036 6 6 4.9021 -1.3696 -0.0081 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8556 -3.2063 0.0032 10 6 1.1349 -2.8881 1.2595 11 6 1.1237 -2.8911 -1.2390 12 6 0.8325 -4.3684 -1.2995 13 8 1.2513 -5.1050 -0.4318 14 7 0.1057 -4.8709 -2.3171 15 6 -0.1779 -6.3070 -2.3756 16 1 -0.2645 -6.7213 -1.3710 17 6 0.9176 -7.0470 -3.1820 18 6 0.1323 -7.6638 -4.3785 19 1 0.7234 -7.9280 -5.2554 20 6 -0.7062 -8.8221 -3.7588 21 6 -1.8016 -8.0820 -2.9524 22 6 -1.4758 -6.5774 -3.1948 23 1 -2.2931 -5.8761 -3.0261 24 7 -0.9293 -6.6227 -4.5935 25 6 -1.2882 -5.9285 -5.7180 26 1 -2.0911 -5.2076 -5.6744 27 6 -0.6197 -6.1514 -6.9141 28 7 0.3592 -7.0295 -6.9672 29 14 -1.1097 -5.2049 -8.4482 30 1 -2.2296 -4.2846 -8.1254 31 1 0.0515 -4.4185 -8.9366 32 1 -1.5401 -6.1587 -9.5018 33 1 -0.3633 0.0030 1.0278 34 1 -0.3633 0.8886 -0.5163 35 1 -0.3634 -0.8914 -0.5112 36 1 5.2109 -1.5552 -1.0369 37 1 5.6682 -0.7852 0.5015 38 1 4.7672 -2.3203 0.5078 39 1 0.2384 -2.2681 1.2628 40 1 0.8497 -3.9401 1.2622 41 1 1.7300 -2.6711 2.1465 42 1 0.1859 -2.3375 -1.1918 43 1 1.6771 -2.5930 -2.1296 44 1 -0.2303 -4.2816 -3.0105 45 1 1.6721 -6.3456 -3.5380 46 1 1.3753 -7.8308 -2.5783 47 1 -1.1533 -9.4340 -4.5422 48 1 -0.0887 -9.4337 -3.1009 49 1 -1.7282 -8.3249 -1.8925 50 1 -2.7921 -8.3271 -3.3359 51 1 0.8260 -7.1856 -7.8030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110736740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:08 Heat of formation + Delta-G solvation = 52.142302 kcal Electronic energy + Delta-G solvation = -31562.859687 eV Core-core repulsion = 27466.273967 eV Total energy + Delta-G solvation = -4096.585720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.05120 -39.94735 -38.68908 -36.55146 -33.98058 -33.75530 -32.61395 -32.49512 -29.24165 -29.13497 -28.93339 -28.39492 -27.76104 -26.94814 -24.29828 -23.91350 -21.69266 -20.67540 -20.26346 -19.87853 -19.62625 -18.66397 -17.77589 -17.06268 -16.99804 -16.66530 -15.78867 -15.43922 -14.88708 -14.65051 -14.40697 -13.97686 -13.87767 -13.76178 -13.53389 -13.36831 -13.33728 -13.21553 -13.03384 -12.77666 -12.59906 -12.34384 -12.06384 -11.89092 -11.58924 -11.48245 -11.35422 -11.14964 -11.12454 -10.97009 -10.94550 -10.64943 -10.54303 -10.39134 -10.11715 -9.95602 -9.94360 -9.63427 -9.30339 -9.24274 -9.12643 -8.99962 -8.45443 -6.98821 -5.78953 -3.18085 1.32090 2.05706 2.94760 2.96216 3.32753 3.38135 3.40944 3.58722 4.04962 4.29717 4.36726 4.53888 4.71571 4.91158 4.96127 5.09134 5.10647 5.16795 5.19515 5.25315 5.30113 5.35636 5.38681 5.47960 5.54122 5.60955 5.62118 5.67601 5.73896 5.81967 5.84821 5.90915 5.98728 6.02822 6.08927 6.12012 6.17584 6.27248 6.34025 6.40608 6.46772 6.58800 6.72637 6.79704 6.92537 7.10968 7.29713 7.43585 7.75325 7.98925 8.13273 8.15328 8.61138 9.02932 9.66287 10.47287 11.30026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.002833 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.556539 B = 9880.756582 C =10962.604258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.031 4.031 6 C -0.075 4.075 7 C -0.191 4.191 8 C 0.007 3.993 9 H 0.091 0.909 10 C -0.150 4.150 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.551 6.551 14 N -0.706 5.706 15 C 0.128 3.872 16 H 0.080 0.920 17 C -0.141 4.141 18 C 0.153 3.847 19 H 0.153 0.847 20 C -0.139 4.139 21 C -0.127 4.127 22 C 0.125 3.875 23 H 0.087 0.913 24 N -0.591 5.591 25 C -0.214 4.214 26 H 0.078 0.922 27 C -0.009 4.009 28 N -0.919 5.919 29 Si 0.914 3.086 30 H -0.281 1.281 31 H -0.291 1.291 32 H -0.291 1.291 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.403 0.597 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 8.347 14.456 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 N -0.076 5.076 4 O 0.029 5.971 5 C -0.095 4.095 6 C -0.133 4.133 7 C -0.195 4.195 8 C -0.012 4.012 9 H 0.109 0.891 10 C -0.207 4.207 11 C -0.179 4.179 12 C 0.297 3.703 13 O -0.430 6.430 14 N -0.355 5.355 15 C 0.022 3.978 16 H 0.098 0.902 17 C -0.182 4.182 18 C 0.047 3.953 19 H 0.169 0.831 20 C -0.179 4.179 21 C -0.167 4.167 22 C 0.016 3.984 23 H 0.105 0.895 24 N -0.312 5.312 25 C -0.342 4.342 26 H 0.096 0.904 27 C -0.205 4.205 28 N -0.567 5.567 29 Si 0.745 3.255 30 H -0.206 1.206 31 H -0.218 1.218 32 H -0.218 1.218 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.237 0.763 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.660 9.234 14.726 17.762 hybrid contribution -0.498 0.072 -1.220 1.320 sum 3.163 9.306 13.505 16.703 Atomic orbital electron populations 1.20330 0.86184 1.03914 1.03403 1.23393 0.98822 0.88439 1.02539 1.73823 0.89326 1.24008 1.20478 1.84789 1.21629 1.22570 1.68102 1.24262 0.98286 0.83726 1.03184 1.20368 0.89944 0.98653 1.04306 1.21022 0.91511 0.97445 1.09500 1.19140 0.99554 0.87689 0.94815 0.89102 1.21965 0.99157 1.03771 0.95790 1.21795 1.02126 0.94117 0.99857 1.20427 0.78227 0.89959 0.81655 1.90623 1.52352 1.61022 1.39017 1.46052 1.53430 1.10123 1.25852 1.22622 0.97365 0.79203 0.98600 0.90244 1.23430 0.97446 0.99069 0.98241 1.23757 0.89808 0.86265 0.95512 0.83058 1.23067 0.97723 0.98768 0.98307 1.22866 0.98999 0.96735 0.98119 1.23174 0.93256 0.95131 0.86837 0.89511 1.46544 1.36953 1.44480 1.03206 1.19042 1.13813 1.15612 0.85769 0.90377 1.24697 0.98529 0.99660 0.97648 1.69468 1.24955 1.36828 1.25401 0.86014 0.77515 0.78893 0.83121 1.20606 1.21837 1.21793 0.90151 0.90535 0.89658 0.89266 0.89923 0.88852 0.93053 0.89669 0.93038 0.88892 0.88924 0.76298 0.92300 0.92898 0.92678 0.93335 0.93016 0.92493 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.13 36.01 0.33 -0.40 16 2 C 0.03 0.31 7.20 -82.10 -0.59 -0.28 16 3 N -0.37 -4.87 12.07 33.42 0.40 -4.47 16 4 O 0.09 1.14 11.20 17.16 0.19 1.33 16 5 C -0.03 -0.33 7.49 -35.31 -0.26 -0.59 16 6 C -0.08 -0.52 10.17 36.00 0.37 -0.15 16 7 C -0.19 -2.11 4.93 -104.42 -0.51 -2.62 16 8 C 0.01 0.08 2.33 -91.77 -0.21 -0.13 16 9 H 0.09 1.04 6.94 -51.93 -0.36 0.68 16 10 C -0.15 -1.63 8.84 37.16 0.33 -1.30 16 11 C -0.14 -1.60 5.02 -27.89 -0.14 -1.74 16 12 C 0.51 7.58 7.55 -10.99 -0.08 7.50 16 13 O -0.55 -9.55 13.61 5.56 0.08 -9.47 16 14 N -0.71 -11.20 5.07 -51.40 -0.26 -11.46 16 15 C 0.13 2.27 2.80 -65.44 -0.18 2.09 16 16 H 0.08 1.41 7.23 -51.92 -0.38 1.04 16 17 C -0.14 -2.78 6.23 -24.24 -0.15 -2.93 16 18 C 0.15 3.38 4.72 -62.81 -0.30 3.09 16 19 H 0.15 3.87 5.52 -51.93 -0.29 3.58 16 20 C -0.14 -2.68 6.44 -24.24 -0.16 -2.84 16 21 C -0.13 -2.23 6.44 -24.23 -0.16 -2.39 16 22 C 0.12 2.32 5.06 -62.80 -0.32 2.01 16 23 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 24 N -0.59 -13.51 2.99 -145.82 -0.44 -13.95 16 25 C -0.21 -5.44 10.59 -15.06 -0.16 -5.60 16 26 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 27 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 28 N -0.92 -25.22 10.47 55.49 0.58 -24.64 16 29 Si 0.91 21.01 29.55 -169.99 -5.02 15.98 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 32 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 33 H 0.08 0.63 8.12 -51.92 -0.42 0.21 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 5.35 -51.93 -0.28 0.41 16 36 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.59 7.39 -51.93 -0.38 0.21 16 39 H 0.05 0.50 6.75 -51.93 -0.35 0.15 16 40 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.92 5.52 -51.93 -0.29 0.63 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.40 6.26 8.66 -40.82 -0.35 5.91 16 45 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 46 H 0.05 0.98 7.82 -51.92 -0.41 0.57 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 49 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -29.99 396.83 -8.75 -38.74 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.96 Total: 8.59 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.30 Total: -6.64 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.29 Total: -54.52 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.27 Total: -8.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.99 -8.75 -38.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110736740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.881 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds