Wall clock time and date at job start Wed Apr 1 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30171 * 126.80267 * 2 1 4 4 O 1.20927 * 111.60412 * 180.25841 * 3 2 1 5 5 C 1.34046 * 111.56431 * 359.74335 * 4 3 2 6 6 C 1.50694 * 126.77237 * 180.02562 * 5 4 3 7 7 C 1.35447 * 106.44773 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.00855 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46613 * 0.02562 * 8 7 5 10 10 C 1.53006 * 109.47239 * 119.99941 * 8 7 5 11 11 C 1.52997 * 109.47466 * 240.00229 * 8 7 5 12 12 C 1.50699 * 109.47337 * 174.99820 * 11 8 7 13 13 O 1.21281 * 119.99984 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00153 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00336 * 180.02562 * 14 12 11 16 16 H 1.09011 * 110.55739 * 32.09858 * 15 14 12 17 17 C 1.54852 * 110.62514 * 269.02963 * 15 14 12 18 18 C 1.55845 * 103.44253 * 241.50391 * 17 15 14 19 19 H 1.09001 * 116.12597 * 159.14840 * 18 17 15 20 20 C 1.55844 * 105.06780 * 288.17621 * 18 17 15 21 21 C 1.54854 * 103.44360 * 71.82370 * 20 18 17 22 22 C 1.55839 * 110.62816 * 154.99966 * 15 14 12 23 23 H 1.09001 * 115.56268 * 319.67965 * 22 15 14 24 24 N 1.50232 * 101.04981 * 32.94175 * 18 17 15 25 25 C 1.36940 * 130.84275 * 126.00974 * 24 18 17 26 26 H 1.07996 * 120.00672 * 180.02562 * 25 24 18 27 27 C 1.38819 * 119.99552 * 0.02562 * 25 24 18 28 28 N 1.31617 * 120.00259 * 359.97438 * 27 25 24 29 29 Si 1.86800 * 119.99857 * 179.97438 * 27 25 24 30 30 H 1.48506 * 109.46913 * 0.02562 * 29 27 25 31 31 H 1.48503 * 109.47036 * 119.99596 * 29 27 25 32 32 H 1.48492 * 109.47115 * 240.00154 * 29 27 25 33 33 H 1.09011 * 109.46542 * 270.16742 * 1 2 3 34 34 H 1.09000 * 109.47105 * 30.15857 * 1 2 3 35 35 H 1.08992 * 109.47534 * 150.16663 * 1 2 3 36 36 H 1.09007 * 109.46969 * 269.99353 * 6 5 4 37 37 H 1.09001 * 109.47512 * 29.99736 * 6 5 4 38 38 H 1.08998 * 109.47055 * 150.00087 * 6 5 4 39 39 H 1.09001 * 109.47002 * 60.00070 * 10 8 7 40 40 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 41 41 H 1.09000 * 109.47050 * 300.00336 * 10 8 7 42 42 H 1.09002 * 109.47196 * 294.99972 * 11 8 7 43 43 H 1.09004 * 109.46881 * 54.99487 * 11 8 7 44 44 H 0.97004 * 119.99957 * 359.97438 * 14 12 11 45 45 H 1.08998 * 110.62947 * 0.02562 * 17 15 14 46 46 H 1.09010 * 110.62633 * 123.02163 * 17 15 14 47 47 H 1.08998 * 110.62364 * 190.31412 * 20 18 17 48 48 H 1.09003 * 110.62624 * 313.17330 * 20 18 17 49 49 H 1.08991 * 110.62635 * 241.51026 * 21 20 18 50 50 H 1.08999 * 110.62063 * 118.49021 * 21 20 18 51 51 H 0.96999 * 120.00404 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0051 5 6 3.6024 -0.6069 -0.0036 6 6 4.9021 -1.3696 -0.0081 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8556 -3.2063 0.0032 10 6 1.1349 -2.8881 1.2595 11 6 1.1237 -2.8911 -1.2390 12 6 0.8325 -4.3684 -1.2995 13 8 1.2513 -5.1050 -0.4318 14 7 0.1057 -4.8709 -2.3171 15 6 -0.1779 -6.3070 -2.3756 16 1 -0.2645 -6.7213 -1.3710 17 6 0.9176 -7.0470 -3.1820 18 6 0.1323 -7.6638 -4.3785 19 1 0.7234 -7.9280 -5.2554 20 6 -0.7062 -8.8221 -3.7588 21 6 -1.8016 -8.0820 -2.9524 22 6 -1.4758 -6.5774 -3.1948 23 1 -2.2931 -5.8761 -3.0261 24 7 -0.9293 -6.6227 -4.5935 25 6 -1.2882 -5.9285 -5.7180 26 1 -2.0911 -5.2076 -5.6744 27 6 -0.6197 -6.1514 -6.9141 28 7 0.3592 -7.0295 -6.9672 29 14 -1.1097 -5.2049 -8.4482 30 1 -2.2296 -4.2846 -8.1254 31 1 0.0515 -4.4185 -8.9366 32 1 -1.5401 -6.1587 -9.5018 33 1 -0.3633 0.0030 1.0278 34 1 -0.3633 0.8886 -0.5163 35 1 -0.3634 -0.8914 -0.5112 36 1 5.2109 -1.5552 -1.0369 37 1 5.6682 -0.7852 0.5015 38 1 4.7672 -2.3203 0.5078 39 1 0.2384 -2.2681 1.2628 40 1 0.8497 -3.9401 1.2622 41 1 1.7300 -2.6711 2.1465 42 1 0.1859 -2.3375 -1.1918 43 1 1.6771 -2.5930 -2.1296 44 1 -0.2303 -4.2816 -3.0105 45 1 1.6721 -6.3456 -3.5380 46 1 1.3753 -7.8308 -2.5783 47 1 -1.1533 -9.4340 -4.5422 48 1 -0.0887 -9.4337 -3.1009 49 1 -1.7282 -8.3249 -1.8925 50 1 -2.7921 -8.3271 -3.3359 51 1 0.8260 -7.1856 -7.8030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110736740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:07 Heat of formation + Delta-G solvation = 35.953968 kcal Electronic energy + Delta-G solvation = -31563.561666 eV Core-core repulsion = 27466.273967 eV Total energy + Delta-G solvation = -4097.287699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.90955 -41.30541 -40.06480 -37.49577 -35.22123 -34.72613 -34.37438 -33.37636 -30.94723 -30.57046 -29.84041 -29.66819 -28.48100 -28.14498 -26.08928 -24.87206 -22.98784 -21.75173 -21.46355 -21.07903 -20.88977 -20.20201 -18.82029 -18.65695 -18.05723 -17.63820 -17.12555 -16.72912 -16.48539 -15.91095 -15.61328 -15.23628 -15.17154 -14.90882 -14.43626 -14.33856 -14.19458 -13.96518 -13.86723 -13.74973 -13.68206 -13.60660 -13.41784 -13.15291 -12.89401 -12.86117 -12.77047 -12.69480 -12.33324 -12.23138 -12.22548 -12.05137 -11.91722 -11.85644 -11.67137 -11.49157 -11.12357 -10.92793 -10.88012 -10.79762 -10.52734 -10.05532 -9.82838 -8.83894 -7.73986 -5.13247 0.49816 1.21579 1.49205 1.50886 1.58999 1.76861 2.18291 2.41144 2.51822 3.23776 3.39927 3.48741 3.54457 3.66425 3.81853 4.04545 4.05551 4.12711 4.15918 4.27029 4.31135 4.39135 4.44938 4.49933 4.53770 4.59660 4.66439 4.67884 4.69430 4.74248 4.75310 4.80687 4.84948 4.87031 4.94955 4.95617 5.07665 5.13458 5.17353 5.21113 5.21363 5.23138 5.34179 5.41507 5.46949 5.55924 5.66408 5.79677 5.93196 6.30446 6.74706 7.08581 7.31384 7.39645 7.75286 8.61131 9.33410 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.002833 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.556539 B = 9880.756582 C =10962.604258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.024 3.976 3 N -0.400 5.400 4 O 0.080 5.920 5 C -0.027 4.027 6 C -0.077 4.077 7 C -0.204 4.204 8 C 0.015 3.985 9 H 0.085 0.915 10 C -0.145 4.145 11 C -0.131 4.131 12 C 0.513 3.487 13 O -0.574 6.574 14 N -0.708 5.708 15 C 0.142 3.858 16 H 0.088 0.912 17 C -0.131 4.131 18 C 0.138 3.862 19 H 0.114 0.886 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.126 3.874 23 H 0.102 0.898 24 N -0.610 5.610 25 C -0.210 4.210 26 H 0.086 0.914 27 C -0.067 4.067 28 N -0.948 5.948 29 Si 0.970 3.030 30 H -0.266 1.266 31 H -0.299 1.299 32 H -0.301 1.301 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.405 0.595 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 9.104 16.144 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 N -0.109 5.109 4 O 0.018 5.982 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.207 4.207 8 C -0.004 4.004 9 H 0.103 0.897 10 C -0.202 4.202 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.454 6.454 14 N -0.357 5.357 15 C 0.035 3.965 16 H 0.106 0.894 17 C -0.172 4.172 18 C 0.032 3.968 19 H 0.131 0.869 20 C -0.172 4.172 21 C -0.159 4.159 22 C 0.019 3.981 23 H 0.120 0.880 24 N -0.332 5.332 25 C -0.339 4.339 26 H 0.104 0.896 27 C -0.259 4.259 28 N -0.598 5.598 29 Si 0.801 3.199 30 H -0.190 1.190 31 H -0.227 1.227 32 H -0.229 1.229 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.240 0.760 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.772 10.005 16.451 19.454 hybrid contribution -0.190 -0.191 -1.682 1.704 sum 2.582 9.815 14.769 17.920 Atomic orbital electron populations 1.20459 0.84579 1.04548 1.04434 1.23843 0.99975 0.88232 1.01390 1.73818 0.89827 1.25036 1.22250 1.84758 1.21470 1.23425 1.68501 1.24873 0.99505 0.83248 1.01388 1.20553 0.88855 0.98735 1.05229 1.21031 0.91804 0.97214 1.10698 1.19028 0.99227 0.87557 0.94579 0.89699 1.21899 0.99721 1.02689 0.95894 1.21784 1.03303 0.91686 1.00320 1.20914 0.77140 0.91136 0.80685 1.90620 1.53044 1.61990 1.39781 1.46038 1.53914 1.09385 1.26348 1.22378 0.95750 0.80216 0.98186 0.89384 1.23285 0.97241 0.98973 0.97665 1.23587 0.90296 0.87685 0.95282 0.86910 1.22968 0.98091 0.97895 0.98273 1.22825 0.98166 0.95310 0.99561 1.23386 0.93924 0.96317 0.84468 0.87968 1.46725 1.37592 1.44520 1.04331 1.19381 1.12980 1.14937 0.86576 0.89647 1.25380 0.99258 1.01100 1.00190 1.69722 1.26315 1.38605 1.25156 0.85111 0.77154 0.77660 0.80018 1.19011 1.22687 1.22875 0.88870 0.90210 0.88663 0.88354 0.88163 0.88115 0.91850 0.91510 0.92620 0.86877 0.88573 0.76040 0.94699 0.91712 0.94604 0.91149 0.89972 0.92414 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.13 71.24 0.65 -0.66 16 2 C 0.02 0.53 7.20 43.58 0.31 0.84 16 3 N -0.40 -10.20 12.07 -49.55 -0.60 -10.79 16 4 O 0.08 1.88 11.20 71.57 0.80 2.68 16 5 C -0.03 -0.52 7.49 25.04 0.19 -0.33 16 6 C -0.08 -0.92 10.17 71.23 0.72 -0.19 16 7 C -0.20 -4.16 4.93 -19.74 -0.10 -4.25 16 8 C 0.02 0.31 2.33 -11.54 -0.03 0.28 16 9 H 0.08 1.82 6.94 -2.39 -0.02 1.80 16 10 C -0.14 -2.86 8.84 71.98 0.64 -2.22 16 11 C -0.13 -2.74 5.02 29.85 0.15 -2.59 16 12 C 0.51 14.26 7.55 87.66 0.66 14.92 16 13 O -0.57 -18.90 13.61 -3.03 -0.04 -18.94 16 14 N -0.71 -21.16 5.07 -434.92 -2.21 -23.37 16 15 C 0.14 4.71 2.80 46.61 0.13 4.84 16 16 H 0.09 2.85 7.23 -2.38 -0.02 2.84 16 17 C -0.13 -5.07 6.23 32.21 0.20 -4.87 16 18 C 0.14 6.13 4.72 46.23 0.22 6.35 16 19 H 0.11 6.00 5.52 -2.39 -0.01 5.99 16 20 C -0.13 -4.97 6.44 32.21 0.21 -4.77 16 21 C -0.12 -3.86 6.44 32.21 0.21 -3.65 16 22 C 0.13 4.42 5.06 46.23 0.23 4.65 16 23 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 24 N -0.61 -27.54 2.99 -615.26 -1.84 -29.38 16 25 C -0.21 -10.57 10.59 84.03 0.89 -9.68 16 26 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 27 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 28 N -0.95 -53.72 10.47 21.65 0.23 -53.50 16 29 Si 0.97 43.65 29.55 68.60 2.03 45.68 16 30 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 31 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 32 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 33 H 0.09 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.27 5.35 -2.39 -0.01 1.25 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.08 7.39 -2.39 -0.02 1.07 16 39 H 0.06 1.07 6.75 -2.39 -0.02 1.06 16 40 H 0.07 1.60 5.95 -2.39 -0.01 1.58 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 1.91 5.52 -2.39 -0.01 1.90 16 43 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.40 11.86 8.66 -92.71 -0.80 11.06 16 45 H 0.03 1.48 7.98 -2.39 -0.02 1.47 16 46 H 0.06 2.31 7.82 -2.38 -0.02 2.29 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 2.29 7.82 -2.39 -0.02 2.27 16 49 H 0.08 2.20 7.82 -2.39 -0.02 2.18 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -65.44 396.83 4.28 -61.16 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.15 Total: 30.85 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.75 Total: -4.40 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -4.41 Total: -117.04 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.76 Total: -16.26 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.44 4.28 -61.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110736740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.116 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds