Wall clock time and date at job start Wed Apr 1 2020 04:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80097 * 2 1 4 4 O 1.20918 * 111.60377 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56576 * 359.75807 * 4 3 2 6 6 C 1.50700 * 126.77544 * 180.28927 * 5 4 3 7 7 C 1.35445 * 106.44752 * 0.38287 * 5 4 3 8 8 C 1.50699 * 128.00604 * 179.90992 * 7 5 4 9 9 C 1.52998 * 109.47522 * 269.67610 * 8 7 5 10 10 H 1.08999 * 109.46941 * 305.00794 * 9 8 7 11 11 C 1.53000 * 109.46734 * 64.99933 * 9 8 7 12 12 C 1.50699 * 109.47346 * 185.00318 * 9 8 7 13 13 O 1.21282 * 120.00005 * 359.97438 * 12 9 8 14 14 N 1.34780 * 119.99921 * 180.02562 * 12 9 8 15 15 C 1.46499 * 119.99985 * 179.97438 * 14 12 9 16 16 H 1.09002 * 110.68041 * 36.53231 * 15 14 12 17 17 C 1.54853 * 110.62704 * 273.54625 * 15 14 12 18 18 C 1.55847 * 103.44204 * 241.50844 * 17 15 14 19 19 H 1.09003 * 115.55501 * 158.81258 * 18 17 15 20 20 C 1.55837 * 105.06457 * 287.42301 * 18 17 15 21 21 C 1.56687 * 102.60192 * 72.30522 * 20 18 17 22 22 C 1.55840 * 110.62389 * 159.51611 * 15 14 12 23 23 H 1.08997 * 116.13297 * 319.34177 * 22 15 14 24 24 N 1.50239 * 101.05204 * 32.93944 * 18 17 15 25 25 C 1.36935 * 130.83819 * 126.00439 * 24 18 17 26 26 H 1.07996 * 119.99744 * 180.02562 * 25 24 18 27 27 C 1.38816 * 120.00006 * 0.03353 * 25 24 18 28 28 N 1.31613 * 119.99947 * 359.97438 * 27 25 24 29 29 Si 1.86803 * 119.99924 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.46970 * 59.99417 * 29 27 25 31 31 H 1.48496 * 109.47104 * 179.97438 * 29 27 25 32 32 H 1.48504 * 109.46898 * 299.99838 * 29 27 25 33 33 H 1.09000 * 109.47369 * 270.02929 * 1 2 3 34 34 H 1.09006 * 109.47153 * 30.02639 * 1 2 3 35 35 H 1.08994 * 109.46980 * 150.02691 * 1 2 3 36 36 H 1.09004 * 109.46924 * 270.10947 * 6 5 4 37 37 H 1.08996 * 109.47638 * 30.11143 * 6 5 4 38 38 H 1.09000 * 109.47413 * 150.11290 * 6 5 4 39 39 H 1.09003 * 109.46786 * 149.67441 * 8 7 5 40 40 H 1.08995 * 109.47207 * 29.68541 * 8 7 5 41 41 H 1.09002 * 109.47158 * 179.97438 * 11 9 8 42 42 H 1.09002 * 109.47536 * 300.00161 * 11 9 8 43 43 H 1.08997 * 109.47170 * 60.00485 * 11 9 8 44 44 H 0.96996 * 119.99773 * 359.97438 * 14 12 9 45 45 H 1.08997 * 110.62754 * 123.02138 * 17 15 14 46 46 H 1.08991 * 110.62474 * 359.97438 * 17 15 14 47 47 H 1.09002 * 110.62880 * 190.31987 * 20 18 17 48 48 H 1.09003 * 110.62640 * 313.33458 * 20 18 17 49 49 H 1.08997 * 110.35327 * 241.22021 * 21 20 18 50 50 H 1.09000 * 110.88830 * 118.35902 * 21 20 18 51 51 H 0.97000 * 119.99821 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0062 6 6 4.9021 -1.3695 0.0146 7 6 2.3539 -1.1320 0.0007 8 6 1.9591 -2.5863 0.0018 9 6 1.8252 -3.0796 -1.4403 10 1 1.1267 -2.4399 -1.9797 11 6 3.1928 -3.0319 -2.1246 12 6 1.3121 -4.4965 -1.4411 13 8 1.0772 -5.0569 -0.3914 14 7 1.1154 -5.1414 -2.6081 15 6 0.6171 -6.5190 -2.6088 16 1 -0.1072 -6.6668 -1.8077 17 6 1.7887 -7.5229 -2.4770 18 6 1.7086 -8.3486 -3.7963 19 1 2.6260 -8.8603 -4.0873 20 6 0.4549 -9.2590 -3.6288 21 6 -0.7280 -8.2410 -3.7688 22 6 -0.0114 -6.8748 -3.9898 23 1 -0.6155 -6.0970 -4.4569 24 7 1.2054 -7.3086 -4.7568 25 6 1.7031 -6.8859 -5.9604 26 1 1.1918 -6.1127 -6.5146 27 6 2.8647 -7.4512 -6.4683 28 7 3.4880 -8.3932 -5.7928 29 14 3.5432 -6.8750 -8.1106 30 1 3.8526 -5.4244 -8.0369 31 1 4.7826 -7.6296 -8.4264 32 1 2.5340 -7.1124 -9.1739 33 1 -0.3634 0.0005 1.0276 34 1 -0.3634 0.8898 -0.5143 35 1 -0.3633 -0.8902 -0.5134 36 1 5.2208 -1.5555 -1.0111 37 1 5.6632 -0.7848 0.5312 38 1 4.7624 -2.3199 0.5297 39 1 1.0051 -2.7034 0.5159 40 1 2.7228 -3.1698 0.5160 41 1 3.0976 -3.3838 -3.1519 42 1 3.5640 -2.0070 -2.1241 43 1 3.8914 -3.6716 -1.5853 44 1 1.3036 -4.6933 -3.4475 45 1 1.6455 -8.1687 -1.6106 46 1 2.7405 -6.9958 -2.4115 47 1 0.4142 -10.0061 -4.4215 48 1 0.4555 -9.7369 -2.6491 49 1 -1.3205 -8.2203 -2.8542 50 1 -1.3547 -8.4888 -4.6255 51 1 4.2999 -8.7880 -6.1475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111115925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:55 Heat of formation + Delta-G solvation = 49.418062 kcal Electronic energy + Delta-G solvation = -31732.916635 eV Core-core repulsion = 27636.212783 eV Total energy + Delta-G solvation = -4096.703852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.05791 -39.96635 -38.61577 -36.28922 -34.22901 -33.80879 -32.78863 -32.41671 -29.13465 -29.06679 -28.81277 -28.66796 -27.68589 -26.60218 -24.38261 -23.89332 -21.84768 -20.86624 -20.23704 -19.85221 -19.36463 -18.68158 -17.83887 -17.15266 -17.02642 -16.61526 -15.86667 -15.25330 -14.86292 -14.58154 -14.26556 -14.23460 -13.92525 -13.72472 -13.60207 -13.40434 -13.28826 -13.06818 -12.86708 -12.67060 -12.52775 -12.33566 -12.04570 -11.95025 -11.83556 -11.48041 -11.29084 -11.18848 -11.13490 -10.97864 -10.91982 -10.89311 -10.52721 -10.41510 -10.15417 -9.96449 -9.92402 -9.63903 -9.31406 -9.24507 -9.07802 -8.98868 -8.45543 -6.98748 -5.78130 -3.17493 1.31547 2.04280 2.95440 2.96947 3.32939 3.38042 3.39426 3.60764 4.04025 4.28898 4.36948 4.62713 4.77287 4.80259 4.98021 5.05360 5.10109 5.12872 5.18306 5.28028 5.31211 5.35180 5.39924 5.48530 5.56814 5.60083 5.65037 5.67251 5.73259 5.78847 5.85231 5.87831 5.96118 6.02912 6.08955 6.12332 6.13548 6.18326 6.28254 6.40293 6.47089 6.57464 6.72688 6.80171 6.92543 7.11015 7.30540 7.42881 7.75507 7.99304 8.13781 8.14799 8.61494 9.03300 9.66654 10.47914 11.30539 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.002914 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.932277 B = 9606.285003 C =10772.998987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.029 4.029 6 C -0.078 4.078 7 C -0.192 4.192 8 C -0.020 4.020 9 C -0.105 4.105 10 H 0.093 0.907 11 C -0.148 4.148 12 C 0.514 3.486 13 O -0.553 6.553 14 N -0.703 5.703 15 C 0.130 3.870 16 H 0.077 0.923 17 C -0.141 4.141 18 C 0.153 3.847 19 H 0.152 0.848 20 C -0.139 4.139 21 C -0.128 4.128 22 C 0.125 3.875 23 H 0.087 0.913 24 N -0.589 5.589 25 C -0.216 4.216 26 H 0.077 0.923 27 C -0.008 4.008 28 N -0.919 5.919 29 Si 0.914 3.086 30 H -0.286 1.286 31 H -0.290 1.290 32 H -0.286 1.286 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.402 0.598 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 11.387 10.771 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.076 5.076 4 O 0.029 5.971 5 C -0.092 4.092 6 C -0.135 4.135 7 C -0.196 4.196 8 C -0.058 4.058 9 C -0.126 4.126 10 H 0.111 0.889 11 C -0.205 4.205 12 C 0.300 3.700 13 O -0.432 6.432 14 N -0.352 5.352 15 C 0.024 3.976 16 H 0.095 0.905 17 C -0.181 4.181 18 C 0.046 3.954 19 H 0.168 0.832 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.016 3.984 23 H 0.105 0.895 24 N -0.310 5.310 25 C -0.344 4.344 26 H 0.095 0.905 27 C -0.204 4.204 28 N -0.566 5.566 29 Si 0.745 3.255 30 H -0.213 1.213 31 H -0.216 1.216 32 H -0.213 1.213 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.236 0.764 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.280 12.289 11.230 16.802 hybrid contribution 0.289 -0.244 -1.301 1.355 sum -1.992 12.044 9.928 15.736 Atomic orbital electron populations 1.20177 0.86062 1.03810 1.03389 1.23465 0.98896 0.88550 1.02694 1.73829 0.89333 1.23999 1.20485 1.84784 1.21608 1.22645 1.68043 1.24255 0.98310 0.83638 1.03041 1.20470 0.89941 0.98694 1.04407 1.20973 0.91520 0.97545 1.09585 1.19672 1.03418 0.87222 0.95512 1.21259 0.99369 0.94310 0.97688 0.88907 1.21911 0.95083 1.02350 1.01181 1.20423 0.77691 0.87812 0.84096 1.90658 1.52346 1.68798 1.31403 1.46021 1.65664 1.15301 1.08211 1.22603 0.96218 0.80053 0.98775 0.90547 1.23435 0.97359 0.98003 0.99309 1.23715 0.97462 0.88755 0.85442 0.83162 1.23369 0.97559 0.97788 0.99153 1.23184 0.97266 0.96842 0.99510 1.23155 0.90092 0.95054 0.90094 0.89486 1.46497 1.23796 1.41543 1.19185 1.18941 1.05277 1.16372 0.93762 0.90511 1.24686 0.97945 0.98947 0.98853 1.69454 1.19929 1.29060 1.38203 0.86166 0.78245 0.77815 0.83312 1.21289 1.21599 1.21292 0.90187 0.90603 0.89886 0.89038 0.89987 0.88823 0.89681 0.89840 0.91400 0.91800 0.91791 0.76351 0.92941 0.92305 0.92651 0.93141 0.93099 0.92468 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.01 0.37 -0.30 16 2 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 3 N -0.37 -4.80 12.07 33.42 0.40 -4.40 16 4 O 0.09 1.12 11.20 17.17 0.19 1.32 16 5 C -0.03 -0.30 6.59 -35.30 -0.23 -0.53 16 6 C -0.08 -0.55 9.37 36.01 0.34 -0.21 16 7 C -0.19 -2.09 4.98 -104.43 -0.52 -2.61 16 8 C -0.02 -0.22 4.36 -27.88 -0.12 -0.34 16 9 C -0.10 -1.22 2.71 -91.77 -0.25 -1.47 16 10 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.15 -1.63 8.09 37.16 0.30 -1.33 16 12 C 0.51 7.84 7.15 -10.98 -0.08 7.76 16 13 O -0.55 -10.11 15.64 5.56 0.09 -10.02 16 14 N -0.70 -11.28 4.99 -51.40 -0.26 -11.54 16 15 C 0.13 2.32 2.73 -65.44 -0.18 2.14 16 16 H 0.08 1.38 7.37 -51.93 -0.38 0.99 16 17 C -0.14 -2.78 6.22 -24.23 -0.15 -2.93 16 18 C 0.15 3.38 4.67 -62.80 -0.29 3.08 16 19 H 0.15 3.84 5.52 -51.93 -0.29 3.55 16 20 C -0.14 -2.68 6.58 -23.23 -0.15 -2.84 16 21 C -0.13 -2.26 6.49 -23.22 -0.15 -2.41 16 22 C 0.12 2.33 5.04 -62.80 -0.32 2.01 16 23 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 24 N -0.59 -13.46 2.99 -145.81 -0.44 -13.89 16 25 C -0.22 -5.46 10.59 -15.06 -0.16 -5.61 16 26 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 27 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 28 N -0.92 -25.10 10.46 55.49 0.58 -24.52 16 29 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 30 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 31 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 32 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.59 7.04 -51.93 -0.37 0.22 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.61 7.44 -51.93 -0.39 0.22 16 39 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 40 H 0.08 0.93 7.44 -51.93 -0.39 0.55 16 41 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 42 H 0.06 0.63 5.37 -51.93 -0.28 0.35 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.40 6.28 8.04 -40.82 -0.33 5.95 16 45 H 0.05 0.98 7.80 -51.93 -0.40 0.58 16 46 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.87 7.80 -51.93 -0.41 0.47 16 49 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -30.06 401.57 -8.89 -38.95 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.20 Total: 8.43 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.29 Total: -6.24 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.29 Total: -54.35 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.28 Total: -8.70 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.06 -8.89 -38.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111115925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.368 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds