Wall clock time and date at job start Wed Apr 1 2020 04:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80097 * 2 1 4 4 O 1.20918 * 111.60377 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56576 * 359.75807 * 4 3 2 6 6 C 1.50700 * 126.77544 * 180.28927 * 5 4 3 7 7 C 1.35445 * 106.44752 * 0.38287 * 5 4 3 8 8 C 1.50699 * 128.00604 * 179.90992 * 7 5 4 9 9 C 1.52998 * 109.47522 * 269.67610 * 8 7 5 10 10 H 1.08999 * 109.46941 * 305.00794 * 9 8 7 11 11 C 1.53000 * 109.46734 * 64.99933 * 9 8 7 12 12 C 1.50699 * 109.47346 * 185.00318 * 9 8 7 13 13 O 1.21282 * 120.00005 * 359.97438 * 12 9 8 14 14 N 1.34780 * 119.99921 * 180.02562 * 12 9 8 15 15 C 1.46499 * 119.99985 * 179.97438 * 14 12 9 16 16 H 1.09002 * 110.68041 * 36.53231 * 15 14 12 17 17 C 1.54853 * 110.62704 * 273.54625 * 15 14 12 18 18 C 1.55847 * 103.44204 * 241.50844 * 17 15 14 19 19 H 1.09003 * 115.55501 * 158.81258 * 18 17 15 20 20 C 1.55837 * 105.06457 * 287.42301 * 18 17 15 21 21 C 1.56687 * 102.60192 * 72.30522 * 20 18 17 22 22 C 1.55840 * 110.62389 * 159.51611 * 15 14 12 23 23 H 1.08997 * 116.13297 * 319.34177 * 22 15 14 24 24 N 1.50239 * 101.05204 * 32.93944 * 18 17 15 25 25 C 1.36935 * 130.83819 * 126.00439 * 24 18 17 26 26 H 1.07996 * 119.99744 * 180.02562 * 25 24 18 27 27 C 1.38816 * 120.00006 * 0.03353 * 25 24 18 28 28 N 1.31613 * 119.99947 * 359.97438 * 27 25 24 29 29 Si 1.86803 * 119.99924 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.46970 * 59.99417 * 29 27 25 31 31 H 1.48496 * 109.47104 * 179.97438 * 29 27 25 32 32 H 1.48504 * 109.46898 * 299.99838 * 29 27 25 33 33 H 1.09000 * 109.47369 * 270.02929 * 1 2 3 34 34 H 1.09006 * 109.47153 * 30.02639 * 1 2 3 35 35 H 1.08994 * 109.46980 * 150.02691 * 1 2 3 36 36 H 1.09004 * 109.46924 * 270.10947 * 6 5 4 37 37 H 1.08996 * 109.47638 * 30.11143 * 6 5 4 38 38 H 1.09000 * 109.47413 * 150.11290 * 6 5 4 39 39 H 1.09003 * 109.46786 * 149.67441 * 8 7 5 40 40 H 1.08995 * 109.47207 * 29.68541 * 8 7 5 41 41 H 1.09002 * 109.47158 * 179.97438 * 11 9 8 42 42 H 1.09002 * 109.47536 * 300.00161 * 11 9 8 43 43 H 1.08997 * 109.47170 * 60.00485 * 11 9 8 44 44 H 0.96996 * 119.99773 * 359.97438 * 14 12 9 45 45 H 1.08997 * 110.62754 * 123.02138 * 17 15 14 46 46 H 1.08991 * 110.62474 * 359.97438 * 17 15 14 47 47 H 1.09002 * 110.62880 * 190.31987 * 20 18 17 48 48 H 1.09003 * 110.62640 * 313.33458 * 20 18 17 49 49 H 1.08997 * 110.35327 * 241.22021 * 21 20 18 50 50 H 1.09000 * 110.88830 * 118.35902 * 21 20 18 51 51 H 0.97000 * 119.99821 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0062 6 6 4.9021 -1.3695 0.0146 7 6 2.3539 -1.1320 0.0007 8 6 1.9591 -2.5863 0.0018 9 6 1.8252 -3.0796 -1.4403 10 1 1.1267 -2.4399 -1.9797 11 6 3.1928 -3.0319 -2.1246 12 6 1.3121 -4.4965 -1.4411 13 8 1.0772 -5.0569 -0.3914 14 7 1.1154 -5.1414 -2.6081 15 6 0.6171 -6.5190 -2.6088 16 1 -0.1072 -6.6668 -1.8077 17 6 1.7887 -7.5229 -2.4770 18 6 1.7086 -8.3486 -3.7963 19 1 2.6260 -8.8603 -4.0873 20 6 0.4549 -9.2590 -3.6288 21 6 -0.7280 -8.2410 -3.7688 22 6 -0.0114 -6.8748 -3.9898 23 1 -0.6155 -6.0970 -4.4569 24 7 1.2054 -7.3086 -4.7568 25 6 1.7031 -6.8859 -5.9604 26 1 1.1918 -6.1127 -6.5146 27 6 2.8647 -7.4512 -6.4683 28 7 3.4880 -8.3932 -5.7928 29 14 3.5432 -6.8750 -8.1106 30 1 3.8526 -5.4244 -8.0369 31 1 4.7826 -7.6296 -8.4264 32 1 2.5340 -7.1124 -9.1739 33 1 -0.3634 0.0005 1.0276 34 1 -0.3634 0.8898 -0.5143 35 1 -0.3633 -0.8902 -0.5134 36 1 5.2208 -1.5555 -1.0111 37 1 5.6632 -0.7848 0.5312 38 1 4.7624 -2.3199 0.5297 39 1 1.0051 -2.7034 0.5159 40 1 2.7228 -3.1698 0.5160 41 1 3.0976 -3.3838 -3.1519 42 1 3.5640 -2.0070 -2.1241 43 1 3.8914 -3.6716 -1.5853 44 1 1.3036 -4.6933 -3.4475 45 1 1.6455 -8.1687 -1.6106 46 1 2.7405 -6.9958 -2.4115 47 1 0.4142 -10.0061 -4.4215 48 1 0.4555 -9.7369 -2.6491 49 1 -1.3205 -8.2203 -2.8542 50 1 -1.3547 -8.4888 -4.6255 51 1 4.2999 -8.7880 -6.1475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111115925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:54 Heat of formation + Delta-G solvation = 33.352434 kcal Electronic energy + Delta-G solvation = -31733.613293 eV Core-core repulsion = 27636.212783 eV Total energy + Delta-G solvation = -4097.400510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.91087 -41.33355 -40.03673 -37.23919 -35.27094 -35.03399 -34.37301 -33.51157 -30.92889 -30.35650 -29.78237 -29.57081 -29.07217 -27.40971 -26.12621 -25.06365 -23.02499 -22.02414 -21.48545 -21.05669 -20.64442 -20.19422 -18.81028 -18.72466 -18.13505 -17.62889 -17.22984 -16.72619 -16.32311 -15.84601 -15.60819 -15.23857 -15.19703 -14.93606 -14.48975 -14.35321 -14.25845 -14.08981 -13.78516 -13.63946 -13.60156 -13.42034 -13.35212 -13.07082 -12.89849 -12.86756 -12.79821 -12.76791 -12.60887 -12.36390 -12.12176 -12.06427 -11.96956 -11.88960 -11.75578 -11.64465 -11.13381 -10.92078 -10.87711 -10.80196 -10.53235 -10.03181 -9.86018 -8.83684 -7.72548 -5.12195 0.50162 1.20344 1.51159 1.52382 1.58151 1.73852 2.18591 2.40466 2.52790 3.24753 3.40513 3.49004 3.53838 3.68567 3.84688 3.90608 4.04376 4.10036 4.17042 4.21582 4.31003 4.38421 4.43133 4.48487 4.52772 4.64086 4.64900 4.66660 4.68257 4.74215 4.76821 4.83683 4.85643 4.87156 4.91125 4.95319 5.00633 5.10769 5.11146 5.16770 5.21167 5.22120 5.28024 5.35777 5.40968 5.55020 5.64814 5.77628 5.92800 6.30818 6.72078 7.09156 7.31845 7.36208 7.76105 8.62061 9.34303 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012436 B = 0.002914 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.932277 B = 9606.285003 C =10772.998987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 N -0.399 5.399 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.080 4.080 7 C -0.204 4.204 8 C -0.010 4.010 9 C -0.094 4.094 10 H 0.108 0.892 11 C -0.143 4.143 12 C 0.516 3.484 13 O -0.582 6.582 14 N -0.704 5.704 15 C 0.142 3.858 16 H 0.085 0.915 17 C -0.130 4.130 18 C 0.139 3.861 19 H 0.113 0.887 20 C -0.133 4.133 21 C -0.120 4.120 22 C 0.126 3.874 23 H 0.103 0.897 24 N -0.608 5.608 25 C -0.213 4.213 26 H 0.085 0.915 27 C -0.064 4.064 28 N -0.947 5.947 29 Si 0.970 3.030 30 H -0.278 1.278 31 H -0.302 1.302 32 H -0.284 1.284 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.405 0.595 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 12.558 11.283 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.108 5.108 4 O 0.019 5.981 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.208 4.208 8 C -0.048 4.048 9 C -0.116 4.116 10 H 0.126 0.874 11 C -0.201 4.201 12 C 0.303 3.697 13 O -0.462 6.462 14 N -0.352 5.352 15 C 0.035 3.965 16 H 0.103 0.897 17 C -0.170 4.170 18 C 0.032 3.968 19 H 0.130 0.870 20 C -0.173 4.173 21 C -0.159 4.159 22 C 0.019 3.981 23 H 0.121 0.879 24 N -0.330 5.330 25 C -0.342 4.342 26 H 0.102 0.898 27 C -0.257 4.257 28 N -0.597 5.597 29 Si 0.801 3.199 30 H -0.204 1.204 31 H -0.229 1.229 32 H -0.211 1.211 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.240 0.760 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.421 13.486 11.750 18.211 hybrid contribution 0.628 -0.624 -1.405 1.661 sum -2.793 12.862 10.345 16.741 Atomic orbital electron populations 1.20295 0.84506 1.04464 1.04289 1.23929 1.00077 0.88427 1.01635 1.73828 0.89812 1.24946 1.22183 1.84756 1.21432 1.23494 1.68384 1.24790 0.99328 0.83119 1.01181 1.20656 0.88951 0.98798 1.05334 1.20947 0.91808 0.97198 1.10833 1.19537 1.03191 0.87273 0.94815 1.21219 0.99800 0.91982 0.98561 0.87410 1.21880 0.94679 1.03158 1.00345 1.20969 0.76663 0.88856 0.83175 1.90646 1.53510 1.69790 1.32280 1.46002 1.65766 1.14678 1.08783 1.22379 0.95246 0.80547 0.98345 0.89745 1.23283 0.97140 0.98203 0.98414 1.23544 0.97289 0.89566 0.86374 0.86955 1.23280 0.96938 0.97391 0.99668 1.23138 0.96585 0.95132 1.01082 1.23364 0.88926 0.96072 0.89738 0.87933 1.46670 1.25337 1.42024 1.18932 1.19291 1.04835 1.15615 0.94480 0.89768 1.25370 0.98869 0.99772 1.01693 1.69713 1.20055 1.30536 1.39369 0.85261 0.76999 0.77474 0.80215 1.20410 1.22851 1.21074 0.89130 0.90159 0.88981 0.88092 0.88271 0.88140 0.90065 0.90022 0.92421 0.90338 0.91997 0.76018 0.91897 0.94677 0.94506 0.90994 0.90103 0.92342 0.94584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.39 71.24 0.74 -0.50 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 N -0.40 -9.98 12.07 -49.56 -0.60 -10.58 16 4 O 0.08 1.86 11.20 71.63 0.80 2.66 16 5 C -0.02 -0.39 6.59 25.04 0.16 -0.22 16 6 C -0.08 -0.96 9.37 71.24 0.67 -0.29 16 7 C -0.20 -4.09 4.98 -19.74 -0.10 -4.19 16 8 C -0.01 -0.20 4.36 29.85 0.13 -0.07 16 9 C -0.09 -2.02 2.71 -11.54 -0.03 -2.05 16 10 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 11 C -0.14 -2.92 8.09 71.98 0.58 -2.33 16 12 C 0.52 14.86 7.15 87.66 0.63 15.49 16 13 O -0.58 -20.31 15.64 -3.03 -0.05 -20.36 16 14 N -0.70 -21.42 4.99 -434.92 -2.17 -23.59 16 15 C 0.14 4.78 2.73 46.61 0.13 4.91 16 16 H 0.08 2.79 7.37 -2.39 -0.02 2.77 16 17 C -0.13 -5.06 6.22 32.21 0.20 -4.86 16 18 C 0.14 6.17 4.67 46.23 0.22 6.38 16 19 H 0.11 5.97 5.52 -2.39 -0.01 5.95 16 20 C -0.13 -5.01 6.58 32.86 0.22 -4.79 16 21 C -0.12 -3.90 6.49 32.87 0.21 -3.69 16 22 C 0.13 4.45 5.04 46.23 0.23 4.68 16 23 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 24 N -0.61 -27.45 2.99 -615.24 -1.84 -29.29 16 25 C -0.21 -10.72 10.59 84.03 0.89 -9.83 16 26 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 27 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 28 N -0.95 -53.31 10.46 21.65 0.23 -53.08 16 29 Si 0.97 43.28 29.55 68.60 2.03 45.31 16 30 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 31 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 32 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.06 7.04 -2.38 -0.02 1.04 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 1.10 7.44 -2.39 -0.02 1.08 16 39 H 0.08 1.73 7.96 -2.39 -0.02 1.71 16 40 H 0.08 1.69 7.44 -2.39 -0.02 1.67 16 41 H 0.06 1.30 7.56 -2.39 -0.02 1.29 16 42 H 0.08 1.37 5.37 -2.39 -0.01 1.36 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.40 12.00 8.04 -92.71 -0.75 11.26 16 45 H 0.06 2.28 7.80 -2.39 -0.02 2.26 16 46 H 0.03 1.50 7.98 -2.39 -0.02 1.48 16 47 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 2.35 7.80 -2.39 -0.02 2.34 16 49 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 50 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -65.22 401.57 4.26 -60.96 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.20 Total: 31.56 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.66 Total: -3.60 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -4.38 Total: -116.54 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.75 Total: -17.69 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.22 4.26 -60.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111115925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.315 kcal (2) G-P(sol) polarization free energy of solvation -65.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds