Wall clock time and date at job start Wed Apr 1 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30171 * 126.80334 * 2 1 4 4 O 1.20923 * 111.60452 * 180.25307 * 3 2 1 5 5 C 1.34038 * 111.56572 * 359.74196 * 4 3 2 6 6 C 1.50703 * 126.77574 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44576 * 359.97438 * 5 4 3 8 8 C 1.50704 * 128.00260 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47088 * 90.00339 * 8 7 5 10 10 O 1.21280 * 120.00144 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00220 * 179.97438 * 9 8 7 12 12 C 1.48115 * 127.83879 * 0.02562 * 11 9 8 13 13 C 1.54332 * 104.69065 * 219.72730 * 12 11 9 14 14 H 1.08998 * 111.85076 * 214.54938 * 13 12 11 15 15 C 1.54160 * 108.86600 * 89.54592 * 13 12 11 16 16 C 1.54837 * 104.33343 * 271.20682 * 15 13 12 17 17 C 1.57145 * 102.91040 * 321.70558 * 16 15 13 18 18 C 1.54160 * 103.23165 * 38.20227 * 17 16 15 19 19 C 1.53005 * 111.81740 * 213.15150 * 18 17 16 20 20 N 1.46505 * 109.46904 * 298.61074 * 19 18 17 21 21 C 1.36931 * 119.99788 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 C 1.48116 * 127.84604 * 180.02562 * 11 9 8 30 30 H 1.08999 * 109.47157 * 270.16682 * 1 2 3 31 31 H 1.08998 * 109.46979 * 30.16952 * 1 2 3 32 32 H 1.08999 * 109.47014 * 150.17024 * 1 2 3 33 33 H 1.09003 * 109.46920 * 270.00139 * 6 5 4 34 34 H 1.09000 * 109.46932 * 29.99664 * 6 5 4 35 35 H 1.08999 * 109.47293 * 149.99749 * 6 5 4 36 36 H 1.08997 * 109.47342 * 329.99960 * 8 7 5 37 37 H 1.09004 * 109.47035 * 210.00213 * 8 7 5 38 38 H 1.08993 * 110.39868 * 338.53301 * 12 11 9 39 39 H 1.09002 * 110.39348 * 100.81585 * 12 11 9 40 40 H 1.08999 * 110.46192 * 29.91385 * 15 13 12 41 41 H 1.08992 * 110.46299 * 152.49133 * 15 13 12 42 42 H 1.08994 * 110.76638 * 80.13764 * 16 15 13 43 43 H 1.09000 * 110.76159 * 203.51786 * 16 15 13 44 44 H 1.08993 * 111.52181 * 279.59202 * 17 16 15 45 45 H 1.09004 * 110.44659 * 156.29230 * 17 16 15 46 46 H 1.09003 * 109.46946 * 178.61833 * 19 18 17 47 47 H 1.08993 * 109.47679 * 58.61376 * 19 18 17 48 48 H 0.97000 * 119.99792 * 0.02562 * 20 19 18 49 49 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.38979 * 21.48201 * 29 11 9 51 51 H 1.09003 * 110.48777 * 259.14959 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6069 -0.0034 6 6 4.9022 -1.3697 -0.0077 7 6 2.3539 -1.1320 0.0040 8 6 1.9591 -2.5864 0.0080 9 6 1.8350 -3.0692 1.4301 10 8 2.0459 -2.3073 2.3498 11 7 1.4886 -4.3475 1.6800 12 6 1.1933 -5.4172 0.6990 13 6 -0.0013 -6.1844 1.3043 14 1 0.0453 -7.2500 1.0800 15 6 -1.3107 -5.5341 0.8154 16 6 -1.6073 -4.4341 1.8640 17 6 -1.1801 -5.1130 3.2153 18 6 0.0813 -5.9096 2.8268 19 6 0.2084 -7.2028 3.6345 20 7 0.3226 -6.8797 5.0589 21 6 0.4483 -7.8843 5.9809 22 1 0.4636 -8.9148 5.6580 23 6 0.5622 -7.5778 7.3300 24 7 0.5440 -6.3220 7.7233 25 14 0.7415 -8.9479 8.5871 26 1 0.7332 -10.2607 7.8929 27 1 2.0225 -8.7829 9.3198 28 1 -0.3894 -8.8893 9.5477 29 6 1.3169 -5.0015 2.9978 30 1 -0.3633 0.0030 1.0276 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5112 33 1 5.2111 -1.5552 -1.0364 34 1 5.6682 -0.7851 0.5019 35 1 4.7673 -2.3202 0.5083 36 1 2.7200 -3.1709 -0.5091 37 1 1.0023 -2.7045 -0.5006 38 1 0.9189 -4.9851 -0.2632 39 1 2.0532 -6.0775 0.5867 40 1 -1.1714 -5.0921 -0.1712 41 1 -2.1162 -6.2680 0.7948 42 1 -1.0072 -3.5448 1.6715 43 1 -2.6693 -4.1893 1.8774 44 1 -1.9543 -5.7834 3.5883 45 1 -0.9380 -4.3564 3.9617 46 1 1.0969 -7.7462 3.3129 47 1 -0.6744 -7.8211 3.4718 48 1 0.3091 -5.9541 5.3488 49 1 0.6233 -6.1079 8.6661 50 1 1.1356 -4.2552 3.7714 51 1 2.1951 -5.5980 3.2451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112577287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:40 Heat of formation + Delta-G solvation = 30.459372 kcal Electronic energy + Delta-G solvation = -31891.666928 eV Core-core repulsion = 27794.140965 eV Total energy + Delta-G solvation = -4097.525963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.01761 -40.70466 -38.63701 -35.41070 -34.79221 -34.06482 -33.79785 -31.77710 -30.47455 -29.92320 -29.02467 -28.74987 -27.38205 -25.43355 -25.37658 -23.76110 -22.18977 -21.99437 -20.38620 -20.20978 -19.29517 -18.64871 -17.84244 -17.15554 -17.10018 -16.69633 -16.30246 -15.33664 -15.14365 -14.58755 -14.43201 -14.24011 -13.92407 -13.68680 -13.63609 -13.47622 -13.31350 -13.22885 -13.13977 -13.06158 -12.97185 -12.75127 -12.59324 -12.44836 -12.19466 -12.04703 -11.52788 -11.20457 -11.09965 -10.88400 -10.80294 -10.76422 -10.62583 -10.56829 -10.38627 -10.23494 -10.09132 -9.94263 -9.76330 -9.66302 -9.22835 -8.88958 -8.54822 -6.92556 -5.76141 -3.05266 1.32966 2.03650 2.64597 2.93456 3.08896 3.43157 3.48407 3.51074 4.02178 4.27506 4.34103 4.46770 4.51194 4.58621 4.65666 4.68753 4.82683 5.00207 5.09597 5.12700 5.16919 5.22676 5.28604 5.29967 5.33743 5.38358 5.45287 5.51513 5.54869 5.56351 5.58069 5.63271 5.72589 5.75205 5.76332 5.88255 5.92584 5.98025 6.03627 6.14084 6.18680 6.24280 6.33028 6.50634 6.50892 6.61880 6.73615 6.77599 7.62674 7.69935 8.17957 8.20802 8.41998 9.53632 10.10945 10.45388 11.46417 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002701 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.904588 B =10364.865563 C =11107.352666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.017 4.017 6 C -0.074 4.074 7 C -0.184 4.184 8 C -0.057 4.057 9 C 0.531 3.469 10 O -0.530 6.530 11 N -0.618 5.618 12 C 0.105 3.895 13 C -0.098 4.098 14 H 0.095 0.905 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.075 4.075 19 C 0.173 3.827 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.121 3.879 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.020 0.980 47 H 0.023 0.977 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.084 0.916 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 6.441 -23.689 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.188 4.188 8 C -0.097 4.097 9 C 0.319 3.681 10 O -0.406 6.406 11 N -0.352 5.352 12 C -0.019 4.019 13 C -0.118 4.118 14 H 0.113 0.887 15 C -0.150 4.150 16 C -0.161 4.161 17 C -0.141 4.141 18 C -0.076 4.076 19 C 0.045 3.955 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C 0.000 4.000 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.037 0.963 47 H 0.041 0.959 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.812 8.142 -23.130 24.588 hybrid contribution 0.012 -1.327 0.973 1.645 sum 1.824 6.816 -22.157 23.253 Atomic orbital electron populations 1.20166 0.86104 1.03358 1.03724 1.23336 0.98805 0.88366 1.01917 1.73804 0.89219 1.23844 1.20693 1.84779 1.21693 1.22345 1.67998 1.24165 0.98054 0.83877 1.01934 1.20345 0.90225 0.98866 1.03740 1.20207 0.91922 0.95923 1.10760 1.19847 1.04171 0.90382 0.95289 1.19974 0.77117 0.80129 0.90880 1.90763 1.49749 1.53659 1.46446 1.48982 1.67987 1.08847 1.09432 1.22538 0.97829 0.89223 0.92277 1.22700 0.94362 0.99771 0.94953 0.88673 1.22354 0.96793 0.97910 0.97987 1.22852 1.00207 0.97651 0.95363 1.22742 0.96611 0.98528 0.96209 1.22259 0.95237 0.96421 0.93692 1.20604 0.97801 0.91749 0.85371 1.42348 1.88559 1.06924 0.99658 1.19237 1.42180 0.88401 0.87331 0.91187 1.24739 1.02932 0.96129 0.97071 1.69669 1.57279 1.15867 1.15065 0.86146 0.77267 0.81140 0.81788 1.20600 1.21904 1.21917 1.22456 0.97684 0.95274 0.84615 0.89886 0.90554 0.90292 0.89397 0.89598 0.89191 0.87822 0.87782 0.90555 0.90962 0.92047 0.91418 0.92109 0.92136 0.90806 0.91406 0.96250 0.95883 0.78123 0.93537 0.89711 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 36.01 0.37 -0.36 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.23 12.07 33.42 0.40 -4.83 16 4 O 0.10 1.25 11.20 17.18 0.19 1.44 16 5 C -0.02 -0.19 7.49 -35.30 -0.26 -0.45 16 6 C -0.07 -0.54 10.25 36.01 0.37 -0.17 16 7 C -0.18 -2.13 4.81 -104.42 -0.50 -2.63 16 8 C -0.06 -0.53 4.93 -29.04 -0.14 -0.67 16 9 C 0.53 7.17 7.87 -10.99 -0.09 7.08 16 10 O -0.53 -9.78 16.30 5.56 0.09 -9.69 16 11 N -0.62 -7.81 2.53 -169.45 -0.43 -8.24 16 12 C 0.10 0.96 6.34 -2.46 -0.02 0.94 16 13 C -0.10 -1.05 3.62 -88.30 -0.32 -1.37 16 14 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 15 C -0.11 -1.09 6.28 -25.16 -0.16 -1.25 16 16 C -0.12 -1.46 6.57 -23.51 -0.15 -1.62 16 17 C -0.10 -1.58 5.50 -23.87 -0.13 -1.71 16 18 C -0.07 -1.11 0.67 -152.21 -0.10 -1.21 16 19 C 0.17 3.21 5.10 -4.04 -0.02 3.19 16 20 N -0.73 -17.72 5.23 -59.90 -0.31 -18.04 16 21 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 29 C 0.12 1.94 5.51 -2.48 -0.01 1.93 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.10 0.75 7.46 -51.93 -0.39 0.36 16 38 H 0.08 0.50 6.60 -51.93 -0.34 0.15 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 45 H 0.07 1.19 7.42 -51.93 -0.39 0.80 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 9.98 7.06 -40.82 -0.29 9.69 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.08 1.62 7.15 -51.93 -0.37 1.25 16 51 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -34.69 407.19 -8.61 -43.31 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.38 Total: 5.63 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.02 Total: -5.62 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.39 Total: -58.46 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.28 Total: -8.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.69 -8.61 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112577287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.766 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds