Wall clock time and date at job start Wed Apr 1 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30171 * 126.80334 * 2 1 4 4 O 1.20923 * 111.60452 * 180.25307 * 3 2 1 5 5 C 1.34038 * 111.56572 * 359.74196 * 4 3 2 6 6 C 1.50703 * 126.77574 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44576 * 359.97438 * 5 4 3 8 8 C 1.50704 * 128.00260 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47088 * 90.00339 * 8 7 5 10 10 O 1.21280 * 120.00144 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00220 * 179.97438 * 9 8 7 12 12 C 1.48115 * 127.83879 * 0.02562 * 11 9 8 13 13 C 1.54332 * 104.69065 * 219.72730 * 12 11 9 14 14 H 1.08998 * 111.85076 * 214.54938 * 13 12 11 15 15 C 1.54160 * 108.86600 * 89.54592 * 13 12 11 16 16 C 1.54837 * 104.33343 * 271.20682 * 15 13 12 17 17 C 1.57145 * 102.91040 * 321.70558 * 16 15 13 18 18 C 1.54160 * 103.23165 * 38.20227 * 17 16 15 19 19 C 1.53005 * 111.81740 * 213.15150 * 18 17 16 20 20 N 1.46505 * 109.46904 * 298.61074 * 19 18 17 21 21 C 1.36931 * 119.99788 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 C 1.48116 * 127.84604 * 180.02562 * 11 9 8 30 30 H 1.08999 * 109.47157 * 270.16682 * 1 2 3 31 31 H 1.08998 * 109.46979 * 30.16952 * 1 2 3 32 32 H 1.08999 * 109.47014 * 150.17024 * 1 2 3 33 33 H 1.09003 * 109.46920 * 270.00139 * 6 5 4 34 34 H 1.09000 * 109.46932 * 29.99664 * 6 5 4 35 35 H 1.08999 * 109.47293 * 149.99749 * 6 5 4 36 36 H 1.08997 * 109.47342 * 329.99960 * 8 7 5 37 37 H 1.09004 * 109.47035 * 210.00213 * 8 7 5 38 38 H 1.08993 * 110.39868 * 338.53301 * 12 11 9 39 39 H 1.09002 * 110.39348 * 100.81585 * 12 11 9 40 40 H 1.08999 * 110.46192 * 29.91385 * 15 13 12 41 41 H 1.08992 * 110.46299 * 152.49133 * 15 13 12 42 42 H 1.08994 * 110.76638 * 80.13764 * 16 15 13 43 43 H 1.09000 * 110.76159 * 203.51786 * 16 15 13 44 44 H 1.08993 * 111.52181 * 279.59202 * 17 16 15 45 45 H 1.09004 * 110.44659 * 156.29230 * 17 16 15 46 46 H 1.09003 * 109.46946 * 178.61833 * 19 18 17 47 47 H 1.08993 * 109.47679 * 58.61376 * 19 18 17 48 48 H 0.97000 * 119.99792 * 0.02562 * 20 19 18 49 49 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.38979 * 21.48201 * 29 11 9 51 51 H 1.09003 * 110.48777 * 259.14959 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6069 -0.0034 6 6 4.9022 -1.3697 -0.0077 7 6 2.3539 -1.1320 0.0040 8 6 1.9591 -2.5864 0.0080 9 6 1.8350 -3.0692 1.4301 10 8 2.0459 -2.3073 2.3498 11 7 1.4886 -4.3475 1.6800 12 6 1.1933 -5.4172 0.6990 13 6 -0.0013 -6.1844 1.3043 14 1 0.0453 -7.2500 1.0800 15 6 -1.3107 -5.5341 0.8154 16 6 -1.6073 -4.4341 1.8640 17 6 -1.1801 -5.1130 3.2153 18 6 0.0813 -5.9096 2.8268 19 6 0.2084 -7.2028 3.6345 20 7 0.3226 -6.8797 5.0589 21 6 0.4483 -7.8843 5.9809 22 1 0.4636 -8.9148 5.6580 23 6 0.5622 -7.5778 7.3300 24 7 0.5440 -6.3220 7.7233 25 14 0.7415 -8.9479 8.5871 26 1 0.7332 -10.2607 7.8929 27 1 2.0225 -8.7829 9.3198 28 1 -0.3894 -8.8893 9.5477 29 6 1.3169 -5.0015 2.9978 30 1 -0.3633 0.0030 1.0276 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5112 33 1 5.2111 -1.5552 -1.0364 34 1 5.6682 -0.7851 0.5019 35 1 4.7673 -2.3202 0.5083 36 1 2.7200 -3.1709 -0.5091 37 1 1.0023 -2.7045 -0.5006 38 1 0.9189 -4.9851 -0.2632 39 1 2.0532 -6.0775 0.5867 40 1 -1.1714 -5.0921 -0.1712 41 1 -2.1162 -6.2680 0.7948 42 1 -1.0072 -3.5448 1.6715 43 1 -2.6693 -4.1893 1.8774 44 1 -1.9543 -5.7834 3.5883 45 1 -0.9380 -4.3564 3.9617 46 1 1.0969 -7.7462 3.3129 47 1 -0.6744 -7.8211 3.4718 48 1 0.3091 -5.9541 5.3488 49 1 0.6233 -6.1079 8.6661 50 1 1.1356 -4.2552 3.7714 51 1 2.1951 -5.5980 3.2451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112577287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:39 Heat of formation + Delta-G solvation = 8.636516 kcal Electronic energy + Delta-G solvation = -31892.613238 eV Core-core repulsion = 27794.140965 eV Total energy + Delta-G solvation = -4098.472273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.91013 -41.76838 -39.74375 -36.48738 -36.27137 -35.25598 -34.59754 -33.49431 -31.54607 -31.01799 -30.21193 -29.60227 -28.22514 -26.86860 -26.42182 -25.26656 -23.67153 -22.94152 -21.22809 -21.17464 -20.30516 -19.90847 -19.01241 -18.70190 -18.01068 -17.73738 -17.46168 -16.54790 -16.36238 -15.98901 -15.59696 -15.18105 -15.15720 -14.97578 -14.77251 -14.70391 -14.33725 -14.25207 -14.04723 -13.95268 -13.89985 -13.78143 -13.43925 -13.29128 -13.15709 -13.07303 -12.94800 -12.86162 -12.68046 -12.12708 -12.05046 -11.91781 -11.79570 -11.72720 -11.64506 -11.50380 -11.46051 -11.37816 -11.08419 -10.93202 -10.75531 -10.07362 -9.62424 -8.97956 -7.94210 -5.22732 0.48360 1.14149 1.46225 1.47119 1.57188 1.64675 2.04323 2.22829 2.55791 3.22164 3.33603 3.39803 3.52305 3.56072 3.63897 3.74284 3.86598 4.00149 4.21088 4.24162 4.25780 4.32207 4.34210 4.45134 4.47168 4.53954 4.56006 4.62326 4.66109 4.67661 4.72758 4.75222 4.76796 4.77613 4.82658 4.87209 4.98322 5.01207 5.07095 5.09087 5.11709 5.19058 5.26555 5.27340 5.37192 5.40227 5.50556 5.51142 5.52572 6.27288 6.65536 7.19315 7.30201 7.33648 8.11621 8.32755 9.29655 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002701 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.904588 B =10364.865563 C =11107.352666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.405 5.405 4 O 0.077 5.923 5 C -0.019 4.019 6 C -0.074 4.074 7 C -0.200 4.200 8 C -0.044 4.044 9 C 0.528 3.472 10 O -0.593 6.593 11 N -0.612 5.612 12 C 0.103 3.897 13 C -0.091 4.091 14 H 0.115 0.885 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.069 4.069 19 C 0.171 3.829 20 N -0.745 5.745 21 C -0.238 4.238 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.972 3.028 26 H -0.261 1.261 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.128 3.872 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.026 0.974 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.371 0.629 49 H 0.248 0.752 50 H 0.035 0.965 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 4.111 -28.025 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 N -0.115 5.115 4 O 0.016 5.984 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.204 4.204 8 C -0.083 4.083 9 C 0.318 3.682 10 O -0.474 6.474 11 N -0.345 5.345 12 C -0.019 4.019 13 C -0.110 4.110 14 H 0.133 0.867 15 C -0.140 4.140 16 C -0.152 4.152 17 C -0.145 4.145 18 C -0.071 4.071 19 C 0.044 3.956 20 N -0.387 5.387 21 C -0.369 4.369 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.185 1.185 27 H -0.224 1.224 28 H -0.224 1.224 29 C 0.005 3.995 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.203 0.797 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.690 5.748 -27.549 28.193 hybrid contribution 0.061 -0.607 2.343 2.422 sum 1.751 5.141 -25.206 25.784 Atomic orbital electron populations 1.20284 0.84502 1.05259 1.03303 1.23929 1.00127 0.88639 1.00978 1.73785 0.89845 1.25191 1.22642 1.84727 1.21495 1.23620 1.68516 1.24939 0.99705 0.83291 1.00351 1.20546 0.88479 0.98182 1.05878 1.20553 0.91794 0.96917 1.11170 1.19953 1.07190 0.89039 0.92136 1.20844 0.75612 0.79522 0.92202 1.90747 1.52467 1.55363 1.48776 1.49010 1.67349 1.09496 1.08654 1.22891 0.97859 0.88298 0.92806 1.22757 0.96013 1.01512 0.90724 0.86694 1.22379 0.96152 0.96911 0.98602 1.22798 1.00559 0.98123 0.93725 1.22676 0.96613 0.97613 0.97611 1.22132 0.94055 0.94076 0.96797 1.20806 0.97935 0.94016 0.82833 1.42605 1.88365 1.05749 1.01959 1.19698 1.39823 0.89390 0.88035 0.90202 1.25582 1.04063 0.98258 0.99274 1.69853 1.59637 1.18091 1.14834 0.85081 0.76454 0.79191 0.79099 1.18544 1.22415 1.22365 1.22069 0.97517 0.94200 0.85736 0.91302 0.89765 0.87353 0.86087 0.89245 0.89112 0.83976 0.84421 0.85903 0.89149 0.88143 0.90625 0.92640 0.91267 0.92494 0.95548 0.95436 0.95357 0.79746 0.94285 0.94591 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.39 71.24 0.74 -0.65 16 2 C 0.02 0.55 7.33 43.58 0.32 0.86 16 3 N -0.40 -11.67 12.07 -49.56 -0.60 -12.27 16 4 O 0.08 2.04 11.20 71.65 0.80 2.84 16 5 C -0.02 -0.41 7.49 25.04 0.19 -0.22 16 6 C -0.07 -0.91 10.25 71.24 0.73 -0.18 16 7 C -0.20 -4.27 4.81 -19.74 -0.10 -4.36 16 8 C -0.04 -0.64 4.93 29.10 0.14 -0.50 16 9 C 0.53 13.47 7.87 87.66 0.69 14.16 16 10 O -0.59 -22.68 16.30 -3.03 -0.05 -22.73 16 11 N -0.61 -14.33 2.53 -808.41 -2.04 -16.38 16 12 C 0.10 1.35 6.34 86.52 0.55 1.90 16 13 C -0.09 -1.55 3.62 -9.29 -0.03 -1.59 16 14 H 0.12 1.63 7.88 -2.39 -0.02 1.62 16 15 C -0.10 -1.47 6.28 31.61 0.20 -1.27 16 16 C -0.11 -2.50 6.57 32.68 0.21 -2.28 16 17 C -0.11 -3.41 5.50 32.44 0.18 -3.23 16 18 C -0.07 -2.02 0.67 -50.69 -0.03 -2.06 16 19 C 0.17 6.33 5.10 86.38 0.44 6.77 16 20 N -0.74 -37.49 5.23 -343.44 -1.79 -39.28 16 21 C -0.24 -13.19 9.99 84.04 0.84 -12.35 16 22 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 24 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 25 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 29 C 0.13 4.25 5.51 86.51 0.48 4.73 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.25 7.65 -2.39 -0.02 1.24 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.13 8.05 -2.39 -0.02 1.12 16 36 H 0.14 1.03 8.08 -2.39 -0.02 1.01 16 37 H 0.14 1.12 7.46 -2.38 -0.02 1.11 16 38 H 0.12 0.59 6.60 -2.39 -0.02 0.58 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.77 7.45 -2.39 -0.02 0.75 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 1.28 7.67 -2.39 -0.02 1.27 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 45 H 0.03 1.02 7.42 -2.38 -0.02 1.00 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 47 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.37 20.60 7.06 -92.71 -0.65 19.95 16 49 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 50 H 0.04 1.52 7.15 -2.38 -0.02 1.50 16 51 H 0.06 2.05 7.95 -2.39 -0.02 2.03 16 Total: -1.00 -84.18 407.19 4.92 -79.26 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.28 Total: 25.46 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.01 Total: -4.45 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -4.15 Total: -129.11 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.75 Total: -19.89 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -84.18 4.92 -79.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112577287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.901 kcal (2) G-P(sol) polarization free energy of solvation -84.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds