Wall clock time and date at job start Wed Apr 1 2020 04:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41379 * 126.79759 * 2 1 4 4 C 1.35460 * 103.98491 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77680 * 179.97438 * 4 3 2 6 6 C 1.50711 * 115.55081 * 329.96947 * 5 4 3 7 7 O 1.21280 * 119.99715 * 338.46404 * 6 5 4 8 8 N 1.34776 * 119.99709 * 158.46882 * 6 5 4 9 9 C 1.46505 * 119.99694 * 175.56722 * 8 6 5 10 10 C 1.52999 * 109.46739 * 87.70314 * 9 8 6 11 11 N 1.46500 * 109.47251 * 59.40253 * 10 9 8 12 12 C 1.36936 * 119.99549 * 293.63976 * 11 10 9 13 13 H 1.08004 * 120.00308 * 1.36198 * 12 11 10 14 14 C 1.38811 * 120.00209 * 181.36240 * 12 11 10 15 15 N 1.31625 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00711 * 180.02562 * 14 12 11 17 17 H 1.48513 * 109.46831 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47537 * 119.99606 * 16 14 12 19 19 H 1.48497 * 109.47349 * 240.00155 * 16 14 12 20 20 C 1.53008 * 109.46776 * 179.39723 * 10 9 8 21 21 C 1.52999 * 109.46776 * 180.02562 * 20 10 9 22 22 C 1.52998 * 109.47315 * 299.99669 * 21 20 10 23 23 C 1.53008 * 109.46929 * 60.00424 * 22 21 20 24 24 C 1.52998 * 109.47315 * 299.39392 * 10 9 8 25 25 C 1.52996 * 117.51940 * 115.66662 * 5 4 3 26 26 C 1.52996 * 60.00032 * 107.48332 * 25 5 4 27 27 O 1.34036 * 106.44243 * 0.24297 * 4 3 2 28 28 N 1.20920 * 111.57044 * 359.56746 * 27 4 3 29 29 H 1.09000 * 109.46795 * 90.00624 * 1 2 3 30 30 H 1.09002 * 109.46883 * 209.99550 * 1 2 3 31 31 H 1.08995 * 109.47412 * 330.00000 * 1 2 3 32 32 H 1.07995 * 128.01251 * 359.96654 * 3 2 1 33 33 H 0.96997 * 120.00553 * 355.57130 * 8 6 5 34 34 H 1.08998 * 109.47201 * 327.70409 * 9 8 6 35 35 H 1.09000 * 109.47062 * 207.70472 * 9 8 6 36 36 H 0.96993 * 120.00378 * 113.64877 * 11 10 9 37 37 H 0.97004 * 120.00017 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46899 * 300.00182 * 20 10 9 39 39 H 1.09000 * 109.46790 * 59.99961 * 20 10 9 40 40 H 1.09000 * 109.47493 * 60.00392 * 21 20 10 41 41 H 1.09006 * 109.46645 * 180.02562 * 21 20 10 42 42 H 1.09000 * 109.47430 * 300.00761 * 22 21 20 43 43 H 1.09004 * 109.47323 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46899 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46790 * 59.99945 * 23 22 21 46 46 H 1.08995 * 109.47711 * 300.00363 * 24 10 9 47 47 H 1.09006 * 109.46690 * 60.00730 * 24 10 9 48 48 H 1.09003 * 117.50600 * 214.97230 * 25 5 4 49 49 H 1.09008 * 117.49986 * 359.97438 * 25 5 4 50 50 H 1.09000 * 117.50068 * 252.51283 * 26 25 5 51 51 H 1.08994 * 117.49995 * 107.49450 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 4.8669 2.7135 -0.6811 7 8 4.0057 2.9558 -1.4999 8 7 5.7926 3.6458 -0.3806 9 6 5.8180 4.9152 -1.1117 10 6 4.8855 5.9165 -0.4272 11 7 5.3241 6.1265 0.9548 12 6 5.2492 5.1018 1.8600 13 1 4.8876 4.1325 1.5498 14 6 5.6382 5.3086 3.1763 15 7 6.0795 6.4897 3.5542 16 14 5.5369 3.9106 4.4110 17 1 5.0125 2.6942 3.7396 18 1 6.8901 3.6317 4.9552 19 1 4.6269 4.2945 5.5199 20 6 4.9234 7.2470 -1.1820 21 6 3.9914 8.2485 -0.4971 22 6 2.5628 7.7008 -0.5007 23 6 2.5249 6.3704 0.2541 24 6 3.4570 5.3685 -0.4313 25 6 5.8090 1.2215 1.2235 26 6 6.1964 0.5602 -0.1006 27 8 3.4538 -0.7252 -0.0046 28 7 2.2869 -1.0423 0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0709 2.1743 -0.0005 33 1 6.4421 3.4764 0.3197 34 1 5.4854 4.7509 -2.1366 35 1 6.8338 5.3104 -1.1183 36 1 5.6673 6.9914 1.2286 37 1 6.3510 6.6345 4.4742 38 1 5.9411 7.6374 -1.1791 39 1 4.5971 7.0907 -2.2102 40 1 4.3181 8.4047 0.5310 41 1 4.0181 9.1962 -1.0351 42 1 2.2361 7.5446 -1.5288 43 1 1.8989 8.4141 -0.0124 44 1 1.5071 5.9804 0.2519 45 1 2.8516 6.5265 1.2822 46 1 3.1307 5.2123 -1.4595 47 1 3.4300 4.4207 0.1065 48 1 6.3803 2.0959 1.5356 49 1 5.4655 0.5724 2.0291 50 1 6.1079 -0.5242 -0.1664 51 1 7.0225 0.9993 -0.6598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115690976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:40 Heat of formation + Delta-G solvation = 59.770849 kcal Electronic energy + Delta-G solvation = -33384.648861 eV Core-core repulsion = 29288.393940 eV Total energy + Delta-G solvation = -4096.254921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.78128 -40.20518 -38.40728 -36.61853 -34.69343 -34.48302 -33.09095 -31.43376 -30.98184 -30.08871 -28.66143 -28.53935 -25.92380 -24.30040 -23.63984 -23.05643 -22.52456 -21.97193 -21.06194 -20.06038 -19.15318 -18.30911 -17.72951 -17.36761 -17.16193 -16.65127 -15.73816 -15.30033 -14.86379 -14.44489 -14.15147 -13.94722 -13.81400 -13.65386 -13.41366 -13.38482 -13.29491 -13.21466 -12.94798 -12.69376 -12.42302 -12.04917 -11.75289 -11.66084 -11.47488 -11.44477 -11.18905 -11.16458 -10.98891 -10.94904 -10.81056 -10.62993 -10.43277 -10.17454 -9.93465 -9.87353 -9.86568 -9.54474 -9.41988 -9.33029 -8.98514 -8.95456 -8.24570 -6.95350 -5.82773 -3.08431 1.53611 2.36891 2.62249 3.05154 3.32680 3.39093 3.44306 3.73915 3.90288 4.27205 4.31681 4.50971 4.53876 4.84269 4.92976 5.21210 5.32258 5.35206 5.37765 5.41814 5.44826 5.51891 5.52771 5.57408 5.62800 5.66891 5.83494 5.85260 5.86913 5.90874 5.95459 5.99986 6.09913 6.11542 6.15430 6.23273 6.27654 6.29451 6.34691 6.43182 6.53524 6.75796 6.87258 6.89254 7.02236 7.03911 7.20561 7.33148 7.69310 7.99297 8.36650 8.36908 8.63954 9.47712 10.08148 10.45061 11.39902 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.004880 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.485132 B = 5735.871354 C = 6770.146457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.015 3.985 3 C -0.196 4.196 4 C 0.021 3.979 5 C -0.087 4.087 6 C 0.553 3.447 7 O -0.535 6.535 8 N -0.691 5.691 9 C 0.111 3.889 10 C 0.185 3.815 11 N -0.712 5.712 12 C -0.228 4.228 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.929 5.929 16 Si 0.885 3.115 17 H -0.275 1.275 18 H -0.293 1.293 19 H -0.294 1.294 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.103 4.103 25 C -0.143 4.143 26 C -0.143 4.143 27 O 0.094 5.906 28 N -0.372 5.372 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.407 0.593 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.383 0.617 37 H 0.253 0.747 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.060 0.940 48 H 0.120 0.880 49 H 0.108 0.892 50 H 0.112 0.888 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -6.241 -8.637 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 C -0.217 4.217 4 C -0.042 4.042 5 C -0.091 4.091 6 C 0.338 3.662 7 O -0.412 6.412 8 N -0.342 5.342 9 C -0.015 4.015 10 C 0.093 3.907 11 N -0.353 5.353 12 C -0.359 4.359 13 H 0.095 0.905 14 C -0.209 4.209 15 N -0.577 5.577 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.220 1.220 19 H -0.222 1.222 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.181 4.181 26 C -0.180 4.180 27 O 0.029 5.971 28 N -0.078 5.078 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.138 0.862 49 H 0.127 0.873 50 H 0.130 0.870 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.203 -7.523 -9.139 12.263 hybrid contribution 0.174 0.353 1.397 1.451 sum -3.029 -7.170 -7.742 10.979 Atomic orbital electron populations 1.20142 0.86050 1.03630 1.03254 1.23565 0.98957 0.88917 1.02902 1.22371 0.90655 1.01255 1.07465 1.22544 0.95594 0.83112 1.02993 1.19446 0.87525 0.95542 1.06636 1.18596 0.82123 0.83306 0.82222 1.90689 1.35812 1.79841 1.34892 1.45734 1.33637 1.15818 1.38965 1.22157 1.00761 0.83613 0.94965 1.20001 0.92400 0.91645 0.86665 1.42472 1.75509 1.13370 1.03967 1.19361 1.35120 0.92166 0.89294 0.90494 1.24700 1.02763 0.96318 0.97117 1.69654 1.50003 1.21074 1.17001 0.86464 0.77255 0.82135 0.82538 1.19967 1.21998 1.22157 1.21619 0.99273 0.95710 0.98507 1.21430 0.95098 0.96804 1.01662 1.21461 0.96481 0.97511 0.99437 1.21456 0.97735 0.94526 1.01389 1.21817 0.95217 0.98291 0.98854 1.23370 0.99679 1.04011 0.91033 1.23186 0.94426 1.00012 1.00413 1.84721 1.21752 1.22306 1.68322 1.73785 0.89190 1.23935 1.20900 0.90257 0.90789 0.89931 0.80950 0.75590 0.91530 0.90990 0.78187 0.93727 0.92328 0.92413 0.90836 0.93463 0.93339 0.93345 0.94330 0.90302 0.93363 0.92173 0.86198 0.87322 0.86991 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.47 36.00 0.38 -0.43 16 2 C 0.01 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.20 -3.20 9.92 -39.38 -0.39 -3.59 16 4 C 0.02 0.34 6.60 -35.30 -0.23 0.11 16 5 C -0.09 -1.29 2.59 -156.81 -0.41 -1.69 16 6 C 0.55 9.17 5.42 -10.98 -0.06 9.11 16 7 O -0.53 -10.08 12.69 5.56 0.07 -10.01 16 8 N -0.69 -10.98 3.04 -60.29 -0.18 -11.17 16 9 C 0.11 1.78 5.36 -4.04 -0.02 1.76 16 10 C 0.19 3.25 0.66 -131.82 -0.09 3.17 16 11 N -0.71 -14.98 4.00 -47.23 -0.19 -15.16 16 12 C -0.23 -5.25 7.55 -15.06 -0.11 -5.37 16 13 H 0.08 1.73 4.87 -52.48 -0.26 1.47 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -25.50 13.06 55.49 0.72 -24.78 16 16 Si 0.88 20.22 29.55 -169.99 -5.02 15.20 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.11 -1.74 4.76 -26.73 -0.13 -1.87 16 21 C -0.11 -1.77 5.75 -26.73 -0.15 -1.92 16 22 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 23 C -0.11 -2.06 5.77 -26.70 -0.15 -2.21 16 24 C -0.10 -1.89 3.01 -26.71 -0.08 -1.97 16 25 C -0.14 -1.91 9.64 -26.74 -0.26 -2.17 16 26 C -0.14 -1.62 9.88 -26.73 -0.26 -1.89 16 27 O 0.09 1.50 10.96 17.19 0.19 1.69 16 28 N -0.37 -6.04 12.07 33.42 0.40 -5.64 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.17 2.89 7.76 -52.49 -0.41 2.48 16 33 H 0.41 6.33 5.86 -40.82 -0.24 6.09 16 34 H 0.07 1.05 7.56 -51.93 -0.39 0.66 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.38 8.93 6.74 -40.82 -0.28 8.66 16 37 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.34 6.99 -51.93 -0.36 0.97 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.68 7.46 -51.93 -0.39 1.30 16 46 H 0.05 0.90 7.60 -51.93 -0.39 0.50 16 47 H 0.06 1.23 4.72 -51.93 -0.25 0.99 16 48 H 0.12 1.65 6.48 -51.93 -0.34 1.32 16 49 H 0.11 1.43 8.14 -51.92 -0.42 1.00 16 50 H 0.11 1.13 8.00 -51.93 -0.42 0.72 16 51 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -28.41 392.88 -8.83 -37.24 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -7.92 Total: 18.39 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.83 Total: -11.68 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.76 Total: -56.75 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.26 Total: -8.32 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.41 -8.83 -37.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115690976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.013 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds