Wall clock time and date at job start Wed Apr 1 2020 04:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41379 * 126.79759 * 2 1 4 4 C 1.35460 * 103.98491 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77680 * 179.97438 * 4 3 2 6 6 C 1.50711 * 115.55081 * 329.96947 * 5 4 3 7 7 O 1.21280 * 119.99715 * 338.46404 * 6 5 4 8 8 N 1.34776 * 119.99709 * 158.46882 * 6 5 4 9 9 C 1.46505 * 119.99694 * 175.56722 * 8 6 5 10 10 C 1.52999 * 109.46739 * 87.70314 * 9 8 6 11 11 N 1.46500 * 109.47251 * 59.40253 * 10 9 8 12 12 C 1.36936 * 119.99549 * 293.63976 * 11 10 9 13 13 H 1.08004 * 120.00308 * 1.36198 * 12 11 10 14 14 C 1.38811 * 120.00209 * 181.36240 * 12 11 10 15 15 N 1.31625 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00711 * 180.02562 * 14 12 11 17 17 H 1.48513 * 109.46831 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47537 * 119.99606 * 16 14 12 19 19 H 1.48497 * 109.47349 * 240.00155 * 16 14 12 20 20 C 1.53008 * 109.46776 * 179.39723 * 10 9 8 21 21 C 1.52999 * 109.46776 * 180.02562 * 20 10 9 22 22 C 1.52998 * 109.47315 * 299.99669 * 21 20 10 23 23 C 1.53008 * 109.46929 * 60.00424 * 22 21 20 24 24 C 1.52998 * 109.47315 * 299.39392 * 10 9 8 25 25 C 1.52996 * 117.51940 * 115.66662 * 5 4 3 26 26 C 1.52996 * 60.00032 * 107.48332 * 25 5 4 27 27 O 1.34036 * 106.44243 * 0.24297 * 4 3 2 28 28 N 1.20920 * 111.57044 * 359.56746 * 27 4 3 29 29 H 1.09000 * 109.46795 * 90.00624 * 1 2 3 30 30 H 1.09002 * 109.46883 * 209.99550 * 1 2 3 31 31 H 1.08995 * 109.47412 * 330.00000 * 1 2 3 32 32 H 1.07995 * 128.01251 * 359.96654 * 3 2 1 33 33 H 0.96997 * 120.00553 * 355.57130 * 8 6 5 34 34 H 1.08998 * 109.47201 * 327.70409 * 9 8 6 35 35 H 1.09000 * 109.47062 * 207.70472 * 9 8 6 36 36 H 0.96993 * 120.00378 * 113.64877 * 11 10 9 37 37 H 0.97004 * 120.00017 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46899 * 300.00182 * 20 10 9 39 39 H 1.09000 * 109.46790 * 59.99961 * 20 10 9 40 40 H 1.09000 * 109.47493 * 60.00392 * 21 20 10 41 41 H 1.09006 * 109.46645 * 180.02562 * 21 20 10 42 42 H 1.09000 * 109.47430 * 300.00761 * 22 21 20 43 43 H 1.09004 * 109.47323 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46899 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46790 * 59.99945 * 23 22 21 46 46 H 1.08995 * 109.47711 * 300.00363 * 24 10 9 47 47 H 1.09006 * 109.46690 * 60.00730 * 24 10 9 48 48 H 1.09003 * 117.50600 * 214.97230 * 25 5 4 49 49 H 1.09008 * 117.49986 * 359.97438 * 25 5 4 50 50 H 1.09000 * 117.50068 * 252.51283 * 26 25 5 51 51 H 1.08994 * 117.49995 * 107.49450 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 4.8669 2.7135 -0.6811 7 8 4.0057 2.9558 -1.4999 8 7 5.7926 3.6458 -0.3806 9 6 5.8180 4.9152 -1.1117 10 6 4.8855 5.9165 -0.4272 11 7 5.3241 6.1265 0.9548 12 6 5.2492 5.1018 1.8600 13 1 4.8876 4.1325 1.5498 14 6 5.6382 5.3086 3.1763 15 7 6.0795 6.4897 3.5542 16 14 5.5369 3.9106 4.4110 17 1 5.0125 2.6942 3.7396 18 1 6.8901 3.6317 4.9552 19 1 4.6269 4.2945 5.5199 20 6 4.9234 7.2470 -1.1820 21 6 3.9914 8.2485 -0.4971 22 6 2.5628 7.7008 -0.5007 23 6 2.5249 6.3704 0.2541 24 6 3.4570 5.3685 -0.4313 25 6 5.8090 1.2215 1.2235 26 6 6.1964 0.5602 -0.1006 27 8 3.4538 -0.7252 -0.0046 28 7 2.2869 -1.0423 0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0709 2.1743 -0.0005 33 1 6.4421 3.4764 0.3197 34 1 5.4854 4.7509 -2.1366 35 1 6.8338 5.3104 -1.1183 36 1 5.6673 6.9914 1.2286 37 1 6.3510 6.6345 4.4742 38 1 5.9411 7.6374 -1.1791 39 1 4.5971 7.0907 -2.2102 40 1 4.3181 8.4047 0.5310 41 1 4.0181 9.1962 -1.0351 42 1 2.2361 7.5446 -1.5288 43 1 1.8989 8.4141 -0.0124 44 1 1.5071 5.9804 0.2519 45 1 2.8516 6.5265 1.2822 46 1 3.1307 5.2123 -1.4595 47 1 3.4300 4.4207 0.1065 48 1 6.3803 2.0959 1.5356 49 1 5.4655 0.5724 2.0291 50 1 6.1079 -0.5242 -0.1664 51 1 7.0225 0.9993 -0.6598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115690976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:39 Heat of formation + Delta-G solvation = 45.116730 kcal Electronic energy + Delta-G solvation = -33385.284311 eV Core-core repulsion = 29288.393940 eV Total energy + Delta-G solvation = -4096.890372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.97756 -41.51770 -39.76307 -37.81912 -35.97053 -35.75433 -34.77880 -32.84998 -32.31993 -31.50975 -30.21133 -29.62786 -27.20621 -25.71955 -25.26224 -24.25466 -23.54703 -23.36903 -22.36488 -21.34758 -20.39117 -19.76340 -19.10160 -18.82198 -18.56240 -17.85827 -17.04156 -16.75570 -16.25564 -15.98379 -15.50712 -15.32767 -15.15860 -15.07823 -14.81093 -14.60527 -14.36281 -14.25475 -14.23726 -14.01350 -13.47355 -13.40554 -13.34538 -12.91649 -12.86015 -12.81078 -12.59271 -12.52195 -12.38843 -12.34102 -12.15419 -11.96155 -11.82697 -11.81717 -11.55985 -11.32507 -11.06873 -11.00458 -10.90443 -10.73480 -10.59996 -10.18452 -9.69532 -8.75477 -7.78130 -5.00245 0.33150 1.18596 1.38713 1.47100 1.53588 1.58220 1.83301 2.50411 2.65068 2.79788 3.20171 3.20910 3.40411 3.57594 3.81349 3.82258 3.89712 4.03183 4.08478 4.11005 4.21171 4.24776 4.47623 4.53556 4.55025 4.56799 4.61227 4.63546 4.71305 4.76276 4.81050 4.83175 4.85435 4.87100 4.93256 4.95397 5.01078 5.03271 5.08471 5.19065 5.22003 5.30209 5.47824 5.51239 5.59607 5.65395 5.73474 5.76242 5.85075 6.44331 6.69908 7.16697 7.34311 7.52281 8.29665 8.55620 9.46066 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.004880 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.485132 B = 5735.871354 C = 6770.146457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.017 3.983 3 C -0.219 4.219 4 C 0.021 3.979 5 C -0.112 4.112 6 C 0.555 3.445 7 O -0.560 6.560 8 N -0.690 5.690 9 C 0.113 3.887 10 C 0.180 3.820 11 N -0.714 5.714 12 C -0.191 4.191 13 H 0.085 0.915 14 C -0.072 4.072 15 N -0.968 5.968 16 Si 0.928 3.072 17 H -0.252 1.252 18 H -0.297 1.297 19 H -0.319 1.319 20 C -0.109 4.109 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.111 4.111 27 O 0.091 5.909 28 N -0.389 5.389 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.409 0.591 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.372 0.628 37 H 0.241 0.759 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.129 0.871 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -7.126 -10.666 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.141 4.141 3 C -0.241 4.241 4 C -0.043 4.043 5 C -0.116 4.116 6 C 0.340 3.660 7 O -0.439 6.439 8 N -0.340 5.340 9 C -0.013 4.013 10 C 0.089 3.911 11 N -0.354 5.354 12 C -0.323 4.323 13 H 0.103 0.897 14 C -0.264 4.264 15 N -0.621 5.621 16 Si 0.761 3.239 17 H -0.176 1.176 18 H -0.225 1.225 19 H -0.248 1.248 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.131 4.131 25 C -0.184 4.184 26 C -0.148 4.148 27 O 0.028 5.972 28 N -0.098 5.098 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.180 0.820 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.205 0.795 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.133 0.867 49 H 0.129 0.871 50 H 0.147 0.853 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.212 -8.448 -11.214 14.403 hybrid contribution 0.092 0.633 1.918 2.022 sum -3.120 -7.815 -9.297 12.540 Atomic orbital electron populations 1.20324 0.83440 1.04802 1.04573 1.24113 1.00632 0.88032 1.01319 1.22426 0.91510 1.01213 1.08934 1.22785 0.96090 0.83297 1.02138 1.19443 0.88509 0.95398 1.08299 1.18834 0.81502 0.83860 0.81785 1.90667 1.36695 1.80456 1.36124 1.45709 1.33581 1.15770 1.38946 1.22082 1.01013 0.83161 0.95031 1.20245 0.92055 0.93631 0.85177 1.42610 1.75163 1.12329 1.05313 1.19607 1.31108 0.92571 0.89057 0.89733 1.25191 1.04791 0.97654 0.98796 1.69785 1.53081 1.22812 1.16391 0.85718 0.76371 0.81366 0.80458 1.17599 1.22475 1.24816 1.21620 0.99912 0.94135 0.99089 1.21394 0.94911 0.98197 1.00242 1.21429 0.96877 0.96018 1.00076 1.21396 0.97803 0.96217 0.99504 1.21689 0.95830 0.97103 0.98447 1.23397 0.99190 1.04303 0.91541 1.23391 0.92463 1.00683 0.98270 1.84696 1.21821 1.22074 1.68588 1.73765 0.89423 1.24438 1.22142 0.88749 0.89583 0.88787 0.81991 0.75366 0.90677 0.89596 0.79467 0.94979 0.91480 0.90234 0.93922 0.90886 0.91433 0.92604 0.93857 0.94156 0.93060 0.94615 0.86674 0.87125 0.85329 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.47 71.24 0.75 -0.76 16 2 C 0.02 0.51 7.33 43.58 0.32 0.83 16 3 C -0.22 -7.11 9.92 22.40 0.22 -6.89 16 4 C 0.02 0.65 6.60 25.04 0.17 0.81 16 5 C -0.11 -3.16 2.59 -53.67 -0.14 -3.30 16 6 C 0.55 17.70 5.42 87.66 0.48 18.17 16 7 O -0.56 -20.60 12.69 -3.03 -0.04 -20.64 16 8 N -0.69 -20.86 3.04 -463.04 -1.41 -22.27 16 9 C 0.11 3.39 5.36 86.38 0.46 3.86 16 10 C 0.18 6.08 0.66 3.61 0.00 6.08 16 11 N -0.71 -29.99 4.00 -303.34 -1.21 -31.20 16 12 C -0.19 -8.81 7.55 84.03 0.63 -8.18 16 13 H 0.08 3.76 4.87 -2.91 -0.01 3.75 16 14 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 15 N -0.97 -54.75 13.06 21.65 0.28 -54.47 16 16 Si 0.93 42.26 29.55 68.60 2.03 44.29 16 17 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.32 -15.73 7.11 99.48 0.71 -15.02 16 20 C -0.11 -3.12 4.76 30.60 0.15 -2.98 16 21 C -0.11 -3.26 5.75 30.59 0.18 -3.08 16 22 C -0.11 -3.16 5.92 30.60 0.18 -2.98 16 23 C -0.11 -4.01 5.77 30.61 0.18 -3.83 16 24 C -0.09 -3.30 3.01 30.61 0.09 -3.21 16 25 C -0.15 -3.64 9.64 30.59 0.30 -3.35 16 26 C -0.11 -2.21 9.88 30.59 0.30 -1.91 16 27 O 0.09 2.81 10.96 71.67 0.79 3.59 16 28 N -0.39 -12.27 12.07 -49.56 -0.60 -12.87 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.16 5.53 7.76 -2.91 -0.02 5.50 16 33 H 0.41 12.07 5.86 -92.71 -0.54 11.52 16 34 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.37 17.54 6.74 -92.71 -0.63 16.91 16 37 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.54 6.99 -2.39 -0.02 1.52 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.04 1.75 7.46 -2.39 -0.02 1.73 16 46 H 0.05 1.83 7.60 -2.39 -0.02 1.81 16 47 H 0.04 1.45 4.72 -2.38 -0.01 1.44 16 48 H 0.12 2.97 6.48 -2.39 -0.02 2.96 16 49 H 0.11 2.70 8.14 -2.38 -0.02 2.69 16 50 H 0.13 2.18 8.00 -2.39 -0.02 2.16 16 51 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.78 392.88 4.36 -58.42 By element: Atomic # 1 Polarization: 49.31 SS G_CDS: -0.20 Total: 49.11 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.73 Total: -13.97 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -2.94 Total: -120.80 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.75 Total: -17.04 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.78 4.36 -58.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115690976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.538 kcal (2) G-P(sol) polarization free energy of solvation -62.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds