Wall clock time and date at job start Wed Apr 1 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34250 * 126.52354 * 2 1 4 4 C 1.34052 * 108.22712 * 180.22670 * 3 2 1 5 5 C 1.50703 * 125.38208 * 179.72866 * 4 3 2 6 6 C 1.53003 * 117.49551 * 8.66490 * 5 4 3 7 7 C 1.53000 * 117.49893 * 300.04131 * 5 4 3 8 8 N 1.29936 * 109.23934 * 359.76283 * 4 3 2 9 9 C 1.36060 * 108.48221 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45452 * 179.97438 * 9 8 4 11 11 O 1.21606 * 120.00089 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99625 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00292 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47582 * 176.63254 * 13 12 10 15 15 N 1.46494 * 109.46929 * 54.62948 * 14 13 12 16 16 C 1.36934 * 120.00219 * 62.83689 * 15 14 13 17 17 H 1.08001 * 120.00166 * 354.26258 * 16 15 14 18 18 C 1.38812 * 120.00307 * 174.53391 * 16 15 14 19 19 N 1.31619 * 119.99693 * 359.72807 * 18 16 15 20 20 Si 1.86796 * 120.00216 * 179.72327 * 18 16 15 21 21 H 1.48501 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46880 * 120.00289 * 20 18 16 23 23 H 1.48503 * 109.47361 * 240.00177 * 20 18 16 24 24 C 1.52997 * 109.46895 * 174.62852 * 14 13 12 25 25 C 1.53011 * 109.46794 * 179.97438 * 24 14 13 26 26 C 1.53000 * 109.46961 * 300.00361 * 25 24 14 27 27 C 1.52991 * 109.47516 * 59.99889 * 26 25 24 28 28 C 1.52997 * 109.47198 * 299.99957 * 27 26 25 29 29 H 1.08999 * 109.47254 * 270.16449 * 1 2 3 30 30 H 1.08996 * 109.47087 * 30.17066 * 1 2 3 31 31 H 1.09002 * 109.46649 * 150.16697 * 1 2 3 32 32 H 1.08994 * 115.54858 * 154.36761 * 5 4 3 33 33 H 1.09001 * 117.50023 * 0.02562 * 6 5 4 34 34 H 1.09002 * 117.49791 * 145.01722 * 6 5 4 35 35 H 1.08997 * 117.50046 * 214.97251 * 7 5 4 36 36 H 1.08998 * 117.49908 * 0.02562 * 7 5 4 37 37 H 0.96998 * 120.00441 * 0.02562 * 12 10 9 38 38 H 1.09013 * 109.46773 * 56.63128 * 13 12 10 39 39 H 1.08996 * 109.46857 * 296.63898 * 13 12 10 40 40 H 0.96999 * 120.00233 * 242.83480 * 15 14 13 41 41 H 0.97008 * 119.99912 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.47488 * 299.99979 * 24 14 13 43 43 H 1.09000 * 109.47359 * 60.00353 * 24 14 13 44 44 H 1.09000 * 109.46910 * 180.02562 * 25 24 14 45 45 H 1.09000 * 109.46821 * 60.00095 * 25 24 14 46 46 H 1.09000 * 109.47136 * 299.99542 * 26 25 24 47 47 H 1.08997 * 109.46600 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.47565 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.47202 * 59.99693 * 27 26 25 50 50 H 1.08998 * 109.47309 * 299.99752 * 28 27 26 51 51 H 1.09008 * 109.47316 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6580 -0.0050 5 6 4.7930 1.5507 -0.0126 6 6 4.5683 3.0505 0.1897 7 6 4.9542 2.5140 -1.1903 8 7 3.6002 -0.6412 -0.0031 9 6 2.3170 -1.0937 0.0028 10 6 1.8853 -2.5032 0.0062 11 8 0.7003 -2.7762 0.0110 12 7 2.8040 -3.4893 0.0040 13 6 2.3752 -4.8902 0.0080 14 6 3.6023 -5.7996 -0.0803 15 7 4.5369 -5.4646 0.9970 16 6 4.1608 -5.6242 2.3040 17 1 3.1466 -5.9079 2.5433 18 6 5.0816 -5.4158 3.3216 19 7 6.3176 -5.0700 3.0300 20 14 4.5665 -5.6260 5.1048 21 1 3.1348 -6.0159 5.1638 22 1 5.3939 -6.6844 5.7375 23 1 4.7615 -4.3452 5.8307 24 6 3.1662 -7.2595 0.0585 25 6 4.3934 -8.1690 -0.0305 26 6 5.0801 -7.9681 -1.3829 27 6 5.5162 -6.5082 -1.5216 28 6 4.2891 -5.5988 -1.4327 29 1 -0.3634 0.0030 1.0276 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5113 32 1 5.6988 1.1157 0.4095 33 1 3.5424 3.3916 0.3287 34 1 5.3265 3.6026 0.7452 35 1 5.9663 2.7131 -1.5427 36 1 4.1819 2.5024 -1.9593 37 1 3.7493 -3.2716 0.0006 38 1 1.7248 -5.0734 -0.8474 39 1 1.8320 -5.1012 0.9291 40 1 5.4221 -5.1297 0.7845 41 1 6.9610 -4.9240 3.7411 42 1 2.6766 -7.4025 1.0217 43 1 2.4709 -7.5088 -0.7431 44 1 4.0826 -9.2091 0.0679 45 1 5.0891 -7.9199 0.7708 46 1 4.3844 -8.2173 -2.1842 47 1 5.9540 -8.6164 -1.4464 48 1 6.0058 -6.3652 -2.4849 49 1 6.2118 -6.2591 -0.7203 50 1 3.5934 -5.8478 -2.2340 51 1 4.5998 -4.5586 -1.5311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115796459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:00 Heat of formation + Delta-G solvation = -13.682818 kcal Electronic energy + Delta-G solvation = -31755.402647 eV Core-core repulsion = 27655.962535 eV Total energy + Delta-G solvation = -4099.440112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.56628 -40.93695 -39.78045 -38.16764 -36.05330 -35.85859 -35.06190 -33.28567 -32.81778 -31.56358 -30.38363 -28.80247 -26.94049 -25.72350 -25.09570 -23.81988 -23.43888 -23.27746 -22.31326 -21.61648 -21.03080 -19.83682 -19.09852 -18.77903 -18.10376 -17.45359 -17.04556 -16.71246 -16.41671 -16.12886 -15.95565 -15.62109 -15.51147 -15.20772 -15.00762 -14.73465 -14.42742 -14.33580 -14.06133 -13.61028 -13.54973 -13.41125 -13.28725 -13.23589 -12.92701 -12.85997 -12.64703 -12.60836 -12.49508 -12.45541 -12.04348 -11.90226 -11.86642 -11.73387 -11.68637 -11.56954 -11.32932 -11.21728 -11.07330 -10.73289 -10.71610 -10.06171 -9.67649 -8.91809 -7.88106 -5.12821 -0.03352 0.86351 1.32603 1.41346 1.44097 1.50813 2.12135 2.25562 2.56902 2.67324 2.89939 3.44334 3.52517 3.65916 3.73807 3.79920 3.90903 3.95165 4.00902 4.08793 4.12962 4.15442 4.37769 4.42677 4.46890 4.53836 4.65844 4.71437 4.72725 4.75275 4.78607 4.80311 4.87850 4.90922 4.94564 4.99093 5.04416 5.04866 5.09509 5.17083 5.18432 5.21201 5.41706 5.48409 5.49848 5.54880 5.60165 5.67090 5.81607 6.32716 6.34893 6.63010 7.12725 7.42497 8.15993 8.40986 9.34812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.003481 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.114825 B = 8042.226062 C = 8768.963843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.041 3.959 3 O -0.193 6.193 4 C 0.226 3.774 5 C -0.102 4.102 6 C -0.146 4.146 7 C -0.141 4.141 8 N -0.482 5.482 9 C -0.103 4.103 10 C 0.591 3.409 11 O -0.568 6.568 12 N -0.682 5.682 13 C 0.119 3.881 14 C 0.189 3.811 15 N -0.710 5.710 16 C -0.206 4.206 17 H 0.064 0.936 18 C -0.066 4.066 19 N -0.961 5.961 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.303 1.303 24 C -0.112 4.112 25 C -0.106 4.106 26 C -0.106 4.106 27 C -0.112 4.112 28 C -0.108 4.108 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.408 0.592 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.375 0.625 41 H 0.245 0.755 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.085 0.915 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 12.182 -13.080 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.016 4.016 3 O -0.081 6.081 4 C 0.017 3.983 5 C -0.121 4.121 6 C -0.183 4.183 7 C -0.178 4.178 8 N -0.211 5.211 9 C -0.222 4.222 10 C 0.377 3.623 11 O -0.450 6.450 12 N -0.330 5.330 13 C -0.006 4.006 14 C 0.098 3.902 15 N -0.350 5.350 16 C -0.338 4.338 17 H 0.082 0.918 18 C -0.258 4.258 19 N -0.612 5.612 20 Si 0.779 3.221 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.231 1.231 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.166 0.834 33 H 0.120 0.880 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.116 0.884 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.208 0.792 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.059 0.941 50 H 0.104 0.896 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.969 11.502 -12.928 18.304 hybrid contribution 0.228 0.206 1.765 1.791 sum -5.742 11.707 -11.163 17.165 Atomic orbital electron populations 1.20681 0.80169 1.06162 1.05480 1.24228 0.96196 0.82692 0.98484 1.84270 1.17806 1.35868 1.70106 1.25725 0.83927 0.89431 0.99240 1.20524 0.90988 0.90494 1.10066 1.23245 1.04673 0.90720 0.99669 1.23261 1.05247 0.98144 0.91191 1.70710 1.21903 1.10149 1.18331 1.21583 0.89551 0.95806 1.15297 1.16937 0.85412 0.83297 0.76618 1.90690 1.16742 1.83866 1.53671 1.45642 1.10201 1.05960 1.71214 1.21899 0.98262 0.80178 1.00303 1.20046 0.88636 0.92541 0.88947 1.42494 1.14658 1.77149 1.00693 1.19256 0.94449 1.35871 0.84226 0.91827 1.25194 0.95970 1.04397 1.00277 1.69780 1.03727 1.56412 1.31314 0.85450 0.77370 0.76360 0.82922 1.19974 1.22238 1.23131 1.21764 0.97784 0.94846 1.00747 1.21306 0.97151 0.98085 0.97838 1.21441 1.00094 0.95886 0.96932 1.21423 0.97071 0.95332 1.01101 1.21654 0.97958 0.99260 0.95672 0.88170 0.87090 0.88031 0.83431 0.88015 0.84929 0.84825 0.88406 0.75584 0.90766 0.94310 0.79177 0.94538 0.94041 0.90570 0.92140 0.94180 0.90556 0.92154 0.90798 0.94053 0.89634 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.88 71.24 0.70 -0.78 16 2 C 0.04 1.21 7.44 25.19 0.19 1.39 16 3 O -0.19 -5.28 10.40 0.43 0.00 -5.28 16 4 C 0.23 6.56 7.80 88.39 0.69 7.25 16 5 C -0.10 -2.06 6.33 -11.54 -0.07 -2.14 16 6 C -0.15 -1.92 10.16 30.60 0.31 -1.61 16 7 C -0.14 -1.87 10.23 30.60 0.31 -1.56 16 8 N -0.48 -17.42 11.06 -293.03 -3.24 -20.66 16 9 C -0.10 -3.75 6.99 40.41 0.28 -3.47 16 10 C 0.59 23.40 7.81 86.66 0.68 24.07 16 11 O -0.57 -23.24 14.80 -4.05 -0.06 -23.30 16 12 N -0.68 -27.01 5.09 -466.37 -2.37 -29.38 16 13 C 0.12 4.53 4.36 86.38 0.38 4.90 16 14 C 0.19 6.94 0.41 3.60 0.00 6.95 16 15 N -0.71 -32.94 3.40 -303.36 -1.03 -33.98 16 16 C -0.21 -10.96 8.70 84.03 0.73 -10.23 16 17 H 0.06 3.43 6.77 -2.91 -0.02 3.41 16 18 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 19 N -0.96 -57.76 13.07 21.65 0.28 -57.48 16 20 Si 0.95 47.41 29.55 68.60 2.03 49.44 16 21 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 23 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 24 C -0.11 -3.83 4.52 30.60 0.14 -3.69 16 25 C -0.11 -3.56 5.77 30.60 0.18 -3.38 16 26 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 27 C -0.11 -3.36 5.75 30.59 0.18 -3.18 16 28 C -0.11 -3.32 4.65 30.59 0.14 -3.18 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.48 6.48 -2.39 -0.02 2.47 16 32 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.10 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.41 17.01 7.12 -92.71 -0.66 16.35 16 38 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.04 1.67 7.50 -2.39 -0.02 1.65 16 40 H 0.37 19.07 6.63 -92.71 -0.61 18.46 16 41 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.04 1.59 7.23 -2.39 -0.02 1.58 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.04 1.69 7.60 -2.39 -0.02 1.68 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.53 6.92 -2.39 -0.02 1.51 16 50 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.05 1.67 7.28 -2.38 -0.02 1.65 16 Total: -1.00 -69.62 406.56 0.77 -68.85 By element: Atomic # 1 Polarization: 46.80 SS G_CDS: -0.32 Total: 46.48 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.48 Total: 5.30 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -6.36 Total: -141.49 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.06 Total: -28.57 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -69.62 0.77 -68.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115796459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds