Wall clock time and date at job start Wed Apr 1 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34863 * 119.09642 * 2 1 4 4 C 1.41669 * 119.33465 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47109 * 117.86471 * 359.97438 * 4 3 2 7 7 C 1.47287 * 120.87960 * 180.02562 * 6 4 3 8 8 O 1.21613 * 120.00441 * 311.69477 * 7 6 4 9 9 N 1.34782 * 119.99660 * 131.69926 * 7 6 4 10 10 C 1.46928 * 120.63028 * 354.49681 * 9 7 6 11 11 C 1.53194 * 108.77303 * 233.58815 * 10 9 7 12 12 C 1.53032 * 109.34248 * 305.37971 * 11 10 9 13 13 H 1.09000 * 109.43427 * 301.31999 * 12 11 10 14 14 C 1.52997 * 109.48728 * 181.35665 * 12 11 10 15 15 C 1.53047 * 109.53809 * 61.31748 * 12 11 10 16 16 H 1.09007 * 109.49206 * 58.64937 * 15 12 11 17 17 C 1.52995 * 109.50001 * 178.71345 * 15 12 11 18 18 N 1.46498 * 109.47500 * 184.93548 * 17 15 12 19 19 C 1.36931 * 120.00126 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99877 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00239 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47530 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47203 * 300.00558 * 23 21 19 26 26 H 1.48502 * 109.46994 * 59.99887 * 23 21 19 27 27 C 1.46922 * 120.62927 * 174.47888 * 9 7 6 28 28 C 1.37987 * 118.23480 * 0.27240 * 6 4 3 29 29 N 1.34352 * 120.36914 * 359.42405 * 28 6 4 30 30 C 1.46502 * 118.80181 * 180.33099 * 29 28 6 31 31 H 1.08997 * 109.46960 * 95.81687 * 1 2 3 32 32 H 1.09004 * 109.47123 * 215.81982 * 1 2 3 33 33 H 1.08997 * 109.46990 * 335.81781 * 1 2 3 34 34 H 1.07994 * 120.33162 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.58603 * 353.38062 * 10 9 7 36 36 H 1.09004 * 109.58404 * 113.65945 * 10 9 7 37 37 H 1.08994 * 109.49612 * 65.32444 * 11 10 9 38 38 H 1.09004 * 109.49017 * 185.41303 * 11 10 9 39 39 H 1.09003 * 109.47149 * 299.91140 * 14 12 11 40 40 H 1.09000 * 109.47236 * 59.91909 * 14 12 11 41 41 H 1.08997 * 109.46925 * 179.91696 * 14 12 11 42 42 H 1.08998 * 109.46882 * 64.93824 * 17 15 12 43 43 H 1.09001 * 109.47402 * 304.93938 * 17 15 12 44 44 H 0.97002 * 119.99576 * 0.02562 * 18 17 15 45 45 H 0.96998 * 119.99963 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.59069 * 6.62605 * 27 9 7 47 47 H 1.09004 * 109.58832 * 246.19970 * 27 9 7 48 48 H 1.07998 * 119.81277 * 179.70834 * 28 6 4 49 49 H 1.08999 * 109.46730 * 264.49845 * 30 29 28 50 50 H 1.08992 * 109.47171 * 24.50330 * 30 29 28 51 51 H 1.09000 * 109.47038 * 144.50136 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 -0.0005 7 6 5.7437 -0.1847 -0.0005 8 8 6.3850 0.4855 -0.7869 9 7 6.3791 -0.9929 0.8711 10 6 5.6275 -1.7166 1.9055 11 6 6.2485 -1.4093 3.2719 12 6 7.7426 -1.7379 3.2350 13 1 7.8766 -2.7891 2.9799 14 6 8.3595 -1.4641 4.6081 15 6 8.4326 -0.8662 2.1831 16 1 8.2784 0.1856 2.4244 17 6 9.9315 -1.1725 2.1693 18 7 10.6087 -0.2569 1.2477 19 6 11.9637 -0.3426 1.0699 20 1 12.5332 -1.0854 1.6087 21 6 12.6052 0.5246 0.1962 22 7 11.9111 1.4295 -0.4608 23 14 14.4536 0.4073 -0.0470 24 1 14.8908 1.4374 -1.0232 25 1 15.1390 0.6334 1.2508 26 1 14.8005 -0.9418 -0.5614 27 6 7.8364 -1.1673 0.8045 28 6 3.5077 -1.2618 -0.0057 29 7 2.1664 -1.1847 0.0010 30 6 1.3880 -2.4258 0.0025 31 1 -0.3633 -0.1042 -1.0224 32 1 -0.3633 -0.8333 0.6014 33 1 -0.3633 0.9375 0.4210 34 1 1.6136 2.1082 -0.0004 35 1 4.5870 -1.3920 1.8956 36 1 5.6779 -2.7880 1.7115 37 1 6.1143 -0.3527 3.5031 38 1 5.7617 -2.0142 4.0369 39 1 8.2263 -0.4128 4.8632 40 1 7.8683 -2.0849 5.3574 41 1 9.4234 -1.6996 4.5819 42 1 10.0893 -2.2001 1.8419 43 1 10.3378 -1.0445 3.1727 44 1 10.0972 0.4105 0.7641 45 1 12.3595 2.0358 -1.0710 46 1 8.2534 -0.4802 0.0681 47 1 8.0691 -2.1941 0.5221 48 1 3.9900 -2.2281 -0.0106 49 1 1.1066 -2.6794 -1.0195 50 1 1.9892 -3.2312 0.4243 51 1 0.4891 -2.2902 0.6039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132910032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:14 Heat of formation + Delta-G solvation = -17.907084 kcal Electronic energy + Delta-G solvation = -31526.998204 eV Core-core repulsion = 27427.374914 eV Total energy + Delta-G solvation = -4099.623289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53656 -39.86664 -38.20513 -37.39655 -34.93409 -33.88227 -33.47778 -32.76586 -31.74801 -29.77779 -28.91130 -27.76320 -27.25311 -25.45811 -24.58052 -23.13524 -23.09570 -21.88408 -21.13822 -20.11616 -19.28259 -18.07650 -17.52424 -16.91521 -16.64099 -16.45585 -15.94323 -15.61898 -14.82269 -14.75935 -14.55797 -14.33186 -13.99913 -13.96831 -13.89601 -13.77220 -13.56548 -13.42414 -13.30137 -13.02388 -12.95317 -12.72303 -12.55043 -12.43881 -12.24624 -12.22431 -11.81250 -11.65890 -11.42429 -10.90597 -10.81042 -10.71046 -10.49809 -10.22347 -10.05837 -9.90676 -9.83171 -9.61602 -9.48350 -9.23305 -8.73734 -8.36299 -8.10811 -6.76676 -5.59604 -2.89806 0.75003 1.06235 2.01130 2.92143 3.19982 3.53556 3.56999 3.59561 3.65964 3.75767 4.04155 4.20613 4.34483 4.42040 4.60936 4.67798 4.73248 4.75601 4.82405 4.85113 4.91860 4.96961 5.06119 5.21251 5.24099 5.30769 5.38802 5.45710 5.54492 5.69724 5.73022 5.74597 5.79120 5.89226 5.99252 6.05376 6.07504 6.14796 6.28598 6.29446 6.33878 6.42027 6.50167 6.54040 6.69610 6.80761 6.92337 7.01227 7.65469 7.81841 8.06690 8.52366 8.57616 9.68092 10.27531 10.61533 11.62384 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002688 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.329150 B =10413.707856 C =11512.527136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.487 6.487 6 C -0.284 4.284 7 C 0.575 3.425 8 O -0.506 6.506 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.128 4.128 12 C -0.083 4.083 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.103 4.103 16 H 0.075 0.925 17 C 0.160 3.840 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.068 0.932 21 C -0.013 4.013 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.287 1.287 26 H -0.287 1.287 27 C 0.123 3.877 28 C 0.161 3.839 29 N -0.474 5.474 30 C 0.050 3.950 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.026 0.974 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.104 0.896 47 H 0.065 0.935 48 H 0.169 0.831 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.471 -14.063 6.276 35.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.368 6.368 6 C -0.295 4.295 7 C 0.362 3.638 8 O -0.379 6.379 9 N -0.347 5.347 10 C -0.019 4.019 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.088 0.912 14 C -0.205 4.205 15 C -0.123 4.123 16 H 0.093 0.907 17 C 0.032 3.968 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.086 0.914 21 C -0.210 4.210 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.214 1.214 27 C 0.001 3.999 28 C 0.032 3.968 29 N -0.161 5.161 30 C -0.091 4.091 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.123 0.877 47 H 0.083 0.917 48 H 0.186 0.814 49 H 0.099 0.901 50 H 0.111 0.889 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -30.731 -13.323 5.826 33.998 hybrid contribution 0.838 0.000 -0.278 0.883 sum -29.894 -13.323 5.548 33.195 Atomic orbital electron populations 1.21180 0.88107 1.04993 1.04062 1.20238 0.94787 0.84998 0.95065 1.22230 0.96164 0.97232 1.13777 1.18185 0.88369 0.87746 0.76307 1.90844 1.70013 1.33369 1.42623 1.22527 0.94701 0.95224 1.17008 1.17535 0.85848 0.79318 0.81100 1.90883 1.66772 1.41011 1.39230 1.48105 1.08472 1.46274 1.31810 1.21817 0.95909 0.96043 0.88111 1.21972 0.96298 1.02428 0.95975 1.21072 0.93685 0.99755 0.95664 0.91175 1.21880 1.01500 1.01485 0.95628 1.21722 0.96388 1.00362 0.93780 0.90676 1.20705 0.88404 0.93663 0.94050 1.42431 1.05451 1.39463 1.50431 1.19133 0.84005 1.13850 1.20375 0.91372 1.24770 0.97753 0.98605 0.99828 1.69676 1.34472 1.22177 1.31233 0.86297 0.85736 0.76949 0.77338 1.21743 1.21390 1.21374 1.21714 0.77200 1.02150 0.98817 1.22126 0.81896 0.99863 0.92877 1.42511 1.05202 1.07081 1.61355 1.22512 0.97768 0.84435 1.04406 0.89377 0.90163 0.88892 0.83047 0.90435 0.91680 0.91384 0.91092 0.92749 0.93340 0.91610 0.96526 0.95644 0.77992 0.93418 0.87742 0.91692 0.81409 0.90103 0.88879 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 9.35 36.01 0.34 0.08 16 2 C 0.16 0.99 6.64 -82.13 -0.55 0.45 16 3 C -0.27 -2.88 9.57 -39.47 -0.38 -3.26 16 4 C 0.41 6.63 6.95 -34.68 -0.24 6.39 16 5 O -0.49 -10.66 17.29 2.74 0.05 -10.61 16 6 C -0.28 -4.05 4.99 -102.71 -0.51 -4.56 16 7 C 0.58 10.59 7.07 -12.58 -0.09 10.50 16 8 O -0.51 -12.32 16.18 3.16 0.05 -12.27 16 9 N -0.61 -9.45 2.97 -174.08 -0.52 -9.97 16 10 C 0.10 1.07 5.29 -3.71 -0.02 1.05 16 11 C -0.13 -1.39 5.36 -26.61 -0.14 -1.53 16 12 C -0.08 -1.07 2.23 -90.58 -0.20 -1.27 16 13 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.84 8.82 37.16 0.33 -1.51 16 15 C -0.10 -1.81 1.92 -90.50 -0.17 -1.98 16 16 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 17 C 0.16 3.35 5.41 -4.05 -0.02 3.33 16 18 N -0.73 -19.84 5.38 -59.92 -0.32 -20.16 16 19 C -0.24 -7.15 9.99 -15.06 -0.15 -7.30 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -30.22 13.06 55.49 0.72 -29.50 16 23 Si 0.91 23.58 29.55 -169.99 -5.02 18.55 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.12 2.22 5.53 -3.71 -0.02 2.20 16 28 C 0.16 1.32 7.81 -16.54 -0.13 1.19 16 29 N -0.47 -2.54 2.97 -119.75 -0.36 -2.89 16 30 C 0.05 0.02 9.98 59.85 0.60 0.62 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.08 -0.01 5.99 -51.93 -0.31 -0.32 16 33 H 0.09 0.16 7.97 -51.93 -0.41 -0.25 16 34 H 0.15 1.41 8.01 -52.49 -0.42 0.99 16 35 H 0.08 0.67 5.14 -51.93 -0.27 0.40 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.89 6.30 -51.93 -0.33 0.56 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 44 H 0.39 11.34 6.90 -40.82 -0.28 11.06 16 45 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 46 H 0.10 2.40 6.20 -51.93 -0.32 2.08 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.17 0.89 7.21 -52.49 -0.38 0.51 16 49 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 50 H 0.09 -0.09 7.86 -51.93 -0.41 -0.50 16 51 H 0.09 -0.12 5.93 -51.93 -0.31 -0.43 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -43.26 400.46 -8.77 -52.03 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.95 Total: 4.88 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.46 Total: 3.90 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.47 Total: -62.52 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.10 Total: -22.88 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -43.26 -8.77 -52.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132910032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.128 kcal (2) G-P(sol) polarization free energy of solvation -43.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds