Wall clock time and date at job start Wed Apr 1 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34863 * 119.09642 * 2 1 4 4 C 1.41669 * 119.33465 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06996 * 179.97438 * 4 3 2 6 6 C 1.47109 * 117.86471 * 359.97438 * 4 3 2 7 7 C 1.47287 * 120.87960 * 180.02562 * 6 4 3 8 8 O 1.21613 * 120.00441 * 311.69477 * 7 6 4 9 9 N 1.34782 * 119.99660 * 131.69926 * 7 6 4 10 10 C 1.46928 * 120.63028 * 354.49681 * 9 7 6 11 11 C 1.53194 * 108.77303 * 233.58815 * 10 9 7 12 12 C 1.53032 * 109.34248 * 305.37971 * 11 10 9 13 13 H 1.09000 * 109.43427 * 301.31999 * 12 11 10 14 14 C 1.52997 * 109.48728 * 181.35665 * 12 11 10 15 15 C 1.53047 * 109.53809 * 61.31748 * 12 11 10 16 16 H 1.09007 * 109.49206 * 58.64937 * 15 12 11 17 17 C 1.52995 * 109.50001 * 178.71345 * 15 12 11 18 18 N 1.46498 * 109.47500 * 184.93548 * 17 15 12 19 19 C 1.36931 * 120.00126 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99877 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00239 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47530 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47203 * 300.00558 * 23 21 19 26 26 H 1.48502 * 109.46994 * 59.99887 * 23 21 19 27 27 C 1.46922 * 120.62927 * 174.47888 * 9 7 6 28 28 C 1.37987 * 118.23480 * 0.27240 * 6 4 3 29 29 N 1.34352 * 120.36914 * 359.42405 * 28 6 4 30 30 C 1.46502 * 118.80181 * 180.33099 * 29 28 6 31 31 H 1.08997 * 109.46960 * 95.81687 * 1 2 3 32 32 H 1.09004 * 109.47123 * 215.81982 * 1 2 3 33 33 H 1.08997 * 109.46990 * 335.81781 * 1 2 3 34 34 H 1.07994 * 120.33162 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.58603 * 353.38062 * 10 9 7 36 36 H 1.09004 * 109.58404 * 113.65945 * 10 9 7 37 37 H 1.08994 * 109.49612 * 65.32444 * 11 10 9 38 38 H 1.09004 * 109.49017 * 185.41303 * 11 10 9 39 39 H 1.09003 * 109.47149 * 299.91140 * 14 12 11 40 40 H 1.09000 * 109.47236 * 59.91909 * 14 12 11 41 41 H 1.08997 * 109.46925 * 179.91696 * 14 12 11 42 42 H 1.08998 * 109.46882 * 64.93824 * 17 15 12 43 43 H 1.09001 * 109.47402 * 304.93938 * 17 15 12 44 44 H 0.97002 * 119.99576 * 0.02562 * 18 17 15 45 45 H 0.96998 * 119.99963 * 179.97438 * 22 21 19 46 46 H 1.09004 * 109.59069 * 6.62605 * 27 9 7 47 47 H 1.09004 * 109.58832 * 246.19970 * 27 9 7 48 48 H 1.07998 * 119.81277 * 179.70834 * 28 6 4 49 49 H 1.08999 * 109.46730 * 264.49845 * 30 29 28 50 50 H 1.08992 * 109.47171 * 24.50330 * 30 29 28 51 51 H 1.09000 * 109.47038 * 144.50136 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 -0.0006 5 8 4.2053 2.2327 -0.0010 6 6 4.2725 -0.1133 -0.0005 7 6 5.7437 -0.1847 -0.0005 8 8 6.3850 0.4855 -0.7869 9 7 6.3791 -0.9929 0.8711 10 6 5.6275 -1.7166 1.9055 11 6 6.2485 -1.4093 3.2719 12 6 7.7426 -1.7379 3.2350 13 1 7.8766 -2.7891 2.9799 14 6 8.3595 -1.4641 4.6081 15 6 8.4326 -0.8662 2.1831 16 1 8.2784 0.1856 2.4244 17 6 9.9315 -1.1725 2.1693 18 7 10.6087 -0.2569 1.2477 19 6 11.9637 -0.3426 1.0699 20 1 12.5332 -1.0854 1.6087 21 6 12.6052 0.5246 0.1962 22 7 11.9111 1.4295 -0.4608 23 14 14.4536 0.4073 -0.0470 24 1 14.8908 1.4374 -1.0232 25 1 15.1390 0.6334 1.2508 26 1 14.8005 -0.9418 -0.5614 27 6 7.8364 -1.1673 0.8045 28 6 3.5077 -1.2618 -0.0057 29 7 2.1664 -1.1847 0.0010 30 6 1.3880 -2.4258 0.0025 31 1 -0.3633 -0.1042 -1.0224 32 1 -0.3633 -0.8333 0.6014 33 1 -0.3633 0.9375 0.4210 34 1 1.6136 2.1082 -0.0004 35 1 4.5870 -1.3920 1.8956 36 1 5.6779 -2.7880 1.7115 37 1 6.1143 -0.3527 3.5031 38 1 5.7617 -2.0142 4.0369 39 1 8.2263 -0.4128 4.8632 40 1 7.8683 -2.0849 5.3574 41 1 9.4234 -1.6996 4.5819 42 1 10.0893 -2.2001 1.8419 43 1 10.3378 -1.0445 3.1727 44 1 10.0972 0.4105 0.7641 45 1 12.3595 2.0358 -1.0710 46 1 8.2534 -0.4802 0.0681 47 1 8.0691 -2.1941 0.5221 48 1 3.9900 -2.2281 -0.0106 49 1 1.1066 -2.6794 -1.0195 50 1 1.9892 -3.2312 0.4243 51 1 0.4891 -2.2902 0.6039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132910032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:12 Heat of formation + Delta-G solvation = -52.063157 kcal Electronic energy + Delta-G solvation = -31528.479322 eV Core-core repulsion = 27427.374914 eV Total energy + Delta-G solvation = -4101.104408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.34663 -41.04593 -39.36818 -38.71920 -36.64335 -35.25384 -34.28012 -33.63828 -33.46980 -31.48403 -29.72676 -28.77807 -27.67867 -27.12955 -25.45538 -25.00122 -24.11601 -22.76601 -22.58944 -21.33080 -20.41554 -19.21340 -18.89516 -18.34582 -17.48552 -17.32629 -16.81092 -16.74481 -16.65612 -16.04195 -15.61222 -15.51787 -15.48727 -15.18008 -14.96033 -14.93264 -14.48206 -14.25824 -14.22436 -14.09605 -14.02999 -13.80107 -13.77436 -13.30964 -13.13491 -13.05836 -12.77770 -12.69036 -12.66031 -12.55974 -12.48558 -12.23077 -12.03418 -11.91310 -11.78364 -11.36894 -11.21789 -11.09601 -10.92462 -10.47262 -10.36265 -9.65817 -9.05628 -9.01800 -7.94400 -5.26414 -0.11941 0.29507 1.42180 1.43985 1.48209 1.54644 1.63436 2.04124 2.54630 2.63730 3.27196 3.37539 3.45077 3.60285 3.66993 3.77703 3.80273 3.84125 4.04317 4.04638 4.23713 4.26488 4.31398 4.40071 4.46675 4.50082 4.52260 4.58456 4.72592 4.74323 4.75010 4.77588 4.81554 4.85081 4.90348 4.94304 4.95940 5.06565 5.11692 5.18070 5.22896 5.23991 5.33940 5.44585 5.46555 5.57289 5.58289 5.73173 5.80422 6.24570 6.43114 7.04318 7.22010 7.28904 8.06368 8.29074 9.29206 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002688 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.329150 B =10413.707856 C =11512.527136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.194 3.806 3 C -0.308 4.308 4 C 0.380 3.620 5 O -0.590 6.590 6 C -0.343 4.343 7 C 0.567 3.433 8 O -0.594 6.594 9 N -0.605 5.605 10 C 0.097 3.903 11 C -0.124 4.124 12 C -0.075 4.075 13 H 0.099 0.901 14 C -0.146 4.146 15 C -0.091 4.091 16 H 0.031 0.969 17 C 0.158 3.842 18 N -0.751 5.751 19 C -0.245 4.245 20 H 0.084 0.916 21 C -0.086 4.086 22 N -0.977 5.977 23 Si 0.983 3.017 24 H -0.299 1.299 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.129 3.871 28 C 0.218 3.782 29 N -0.453 5.453 30 C 0.032 3.968 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.121 0.879 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.366 0.634 45 H 0.249 0.751 46 H 0.039 0.961 47 H 0.087 0.913 48 H 0.215 0.785 49 H 0.100 0.900 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.671 -20.597 8.534 42.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.331 4.331 4 C 0.275 3.725 5 O -0.480 6.480 6 C -0.354 4.354 7 C 0.357 3.643 8 O -0.474 6.474 9 N -0.337 5.337 10 C -0.024 4.024 11 C -0.162 4.162 12 C -0.093 4.093 13 H 0.117 0.883 14 C -0.203 4.203 15 C -0.111 4.111 16 H 0.050 0.950 17 C 0.032 3.968 18 N -0.394 5.394 19 C -0.376 4.376 20 H 0.102 0.898 21 C -0.278 4.278 22 N -0.628 5.628 23 Si 0.810 3.190 24 H -0.226 1.226 25 H -0.199 1.199 26 H -0.197 1.197 27 C 0.006 3.994 28 C 0.084 3.916 29 N -0.136 5.136 30 C -0.106 4.106 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.170 0.830 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.139 0.861 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.197 0.803 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.106 0.894 48 H 0.231 0.769 49 H 0.119 0.881 50 H 0.141 0.859 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -35.032 -20.007 8.181 41.164 hybrid contribution 1.878 1.775 -0.911 2.740 sum -33.153 -18.232 7.270 38.528 Atomic orbital electron populations 1.21417 0.83634 1.07009 1.06089 1.20832 0.97095 0.83802 0.89705 1.22044 0.93486 0.99736 1.17840 1.19063 0.90734 0.87546 0.75181 1.90780 1.72040 1.36151 1.49060 1.21994 0.92574 0.96743 1.24046 1.18322 0.87757 0.78109 0.80156 1.90818 1.69013 1.44598 1.42971 1.48185 1.07410 1.45893 1.32258 1.22328 0.96119 0.98015 0.85913 1.21993 0.94891 1.01670 0.97682 1.21087 0.94687 0.99771 0.93805 0.88302 1.21865 1.01024 1.01139 0.96263 1.21596 0.94883 0.99158 0.95482 0.94998 1.20931 0.90219 0.92875 0.92770 1.42755 1.05170 1.40117 1.51332 1.19676 0.85214 1.13316 1.19443 0.89849 1.25785 1.03163 0.98660 1.00173 1.69917 1.36594 1.23670 1.32605 0.85079 0.79312 0.77163 0.77398 1.22580 1.19934 1.19695 1.21399 0.79290 1.01339 0.97373 1.22537 0.82815 0.99158 0.87097 1.43218 1.04712 1.09055 1.56648 1.23161 0.98676 0.81999 1.06761 0.87279 0.86279 0.88499 0.83023 0.88327 0.86681 0.94355 0.86122 0.94599 0.89602 0.93011 0.94979 0.94966 0.80256 0.94234 0.94265 0.89449 0.76899 0.88104 0.85935 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.21 9.35 71.24 0.67 0.88 16 2 C 0.19 1.79 6.64 41.21 0.27 2.06 16 3 C -0.31 -6.87 9.57 22.34 0.21 -6.66 16 4 C 0.38 13.91 6.95 25.45 0.18 14.09 16 5 O -0.59 -30.41 17.29 -3.59 -0.06 -30.47 16 6 C -0.34 -10.32 4.99 -18.63 -0.09 -10.41 16 7 C 0.57 23.06 7.07 86.62 0.61 23.67 16 8 O -0.59 -33.49 16.18 -2.06 -0.03 -33.53 16 9 N -0.60 -19.38 2.97 -822.92 -2.45 -21.83 16 10 C 0.10 1.64 5.29 86.36 0.46 2.10 16 11 C -0.12 -2.29 5.36 30.67 0.16 -2.13 16 12 C -0.07 -1.76 2.23 -10.77 -0.02 -1.79 16 13 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.15 -3.33 8.82 71.98 0.63 -2.70 16 15 C -0.09 -3.38 1.92 -10.72 -0.02 -3.40 16 16 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 17 C 0.16 6.86 5.41 86.38 0.47 7.33 16 18 N -0.75 -43.38 5.38 -343.47 -1.85 -45.22 16 19 C -0.24 -14.95 9.99 84.03 0.84 -14.11 16 20 H 0.08 4.73 7.83 -2.91 -0.02 4.71 16 21 C -0.09 -5.48 5.50 84.86 0.47 -5.01 16 22 N -0.98 -67.99 13.06 21.65 0.28 -67.71 16 23 Si 0.98 50.14 29.55 68.60 2.03 52.17 16 24 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 25 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.13 4.99 5.53 86.36 0.48 5.47 16 28 C 0.22 2.76 7.81 84.25 0.66 3.42 16 29 N -0.45 -2.34 2.97 -532.77 -1.58 -3.93 16 30 C 0.03 -0.24 9.98 127.77 1.28 1.04 16 31 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.12 -1.01 5.99 -2.39 -0.01 -1.03 16 33 H 0.10 -0.09 7.97 -2.39 -0.02 -0.10 16 34 H 0.15 3.17 8.01 -2.91 -0.02 3.14 16 35 H 0.10 1.28 5.14 -2.39 -0.01 1.27 16 36 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.12 1.16 8.14 -2.38 -0.02 1.15 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.32 6.30 -2.39 -0.02 1.31 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.03 1.37 6.14 -2.39 -0.01 1.36 16 44 H 0.37 23.79 6.90 -92.71 -0.64 23.15 16 45 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 46 H 0.04 2.04 6.20 -2.39 -0.01 2.03 16 47 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 48 H 0.21 0.84 7.21 -2.91 -0.02 0.82 16 49 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 50 H 0.12 -1.43 7.86 -2.39 -0.02 -1.45 16 51 H 0.12 -1.52 5.93 -2.39 -0.01 -1.53 16 Total: -1.00 -119.14 400.46 3.89 -115.25 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.31 Total: 21.41 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 7.24 Total: 13.85 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -5.59 Total: -138.68 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -0.10 Total: -64.00 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -119.14 3.89 -115.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132910032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.188 kcal (2) G-P(sol) polarization free energy of solvation -119.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds