Wall clock time and date at job start Wed Apr 1 2020 04:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30018 * 127.33045 * 2 1 4 4 O 1.20657 * 112.29719 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.16046 * 359.70682 * 4 3 2 6 6 C 1.50701 * 126.83341 * 180.30872 * 5 4 3 7 7 C 1.53002 * 117.49656 * 8.92449 * 6 5 4 8 8 C 1.52999 * 117.49989 * 300.26615 * 6 5 4 9 9 C 1.37357 * 106.34011 * 0.46020 * 5 4 3 10 10 C 1.47400 * 128.56751 * 179.85847 * 9 5 4 11 11 O 1.21608 * 119.99588 * 269.69433 * 10 9 5 12 12 N 1.34775 * 120.00209 * 89.69447 * 10 9 5 13 13 C 1.46920 * 120.63274 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77550 * 126.36805 * 13 12 10 15 15 C 1.53040 * 109.31153 * 54.63854 * 14 13 12 16 16 H 1.09004 * 109.46170 * 58.65203 * 15 14 13 17 17 C 1.52999 * 109.46007 * 178.61228 * 15 14 13 18 18 C 1.53041 * 109.53567 * 298.63320 * 15 14 13 19 19 H 1.09002 * 109.49802 * 301.41484 * 18 15 14 20 20 C 1.53003 * 109.52102 * 181.33369 * 18 15 14 21 21 N 1.46508 * 109.46907 * 175.08100 * 20 18 15 22 22 C 1.36933 * 119.99970 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99929 * 0.02562 * 22 21 20 24 24 C 1.38805 * 119.99981 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00086 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00138 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46921 * 90.00434 * 26 24 22 28 28 H 1.48497 * 109.47314 * 209.99869 * 26 24 22 29 29 H 1.48502 * 109.46968 * 330.00329 * 26 24 22 30 30 C 1.46925 * 120.62902 * 180.02562 * 12 10 9 31 31 H 1.09005 * 109.47058 * 269.96000 * 1 2 3 32 32 H 1.09001 * 109.47236 * 29.96459 * 1 2 3 33 33 H 1.09007 * 109.47045 * 149.96456 * 1 2 3 34 34 H 1.08999 * 115.54686 * 154.58728 * 6 5 4 35 35 H 1.09004 * 117.50206 * 359.97438 * 7 6 5 36 36 H 1.08997 * 117.50015 * 145.01874 * 7 6 5 37 37 H 1.09005 * 117.49681 * 214.97495 * 8 6 5 38 38 H 1.08998 * 117.50198 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.58885 * 246.15735 * 13 12 10 40 40 H 1.09000 * 109.58663 * 6.43877 * 13 12 10 41 41 H 1.09005 * 109.49580 * 174.58602 * 14 13 12 42 42 H 1.08995 * 109.49630 * 294.68274 * 14 13 12 43 43 H 1.08998 * 109.46984 * 180.02562 * 17 15 14 44 44 H 1.08999 * 109.47278 * 300.06604 * 17 15 14 45 45 H 1.09005 * 109.47059 * 60.06513 * 17 15 14 46 46 H 1.09000 * 109.46899 * 295.07550 * 20 18 15 47 47 H 1.08996 * 109.47371 * 55.08484 * 20 18 15 48 48 H 0.97006 * 119.99927 * 359.97438 * 21 20 18 49 49 H 0.97003 * 120.00137 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58550 * 113.84297 * 30 12 10 51 51 H 1.09007 * 109.70721 * 353.48741 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6006 0.0054 6 6 4.9712 -1.3244 0.0130 7 6 6.2340 -0.4869 0.2249 8 6 5.9237 -1.0684 -1.1567 9 6 2.3993 -1.1695 -0.0005 10 6 2.0402 -2.5991 -0.0005 11 8 1.8922 -3.1888 -1.0537 12 7 1.8759 -3.2528 1.1666 13 6 2.0508 -2.5539 2.4471 14 6 0.7942 -2.7623 3.2982 15 6 0.5172 -4.2614 3.4331 16 1 1.3773 -4.7498 3.8912 17 6 -0.7173 -4.4746 4.3113 18 6 0.2676 -4.8623 2.0479 19 1 -0.5770 -4.3574 1.5791 20 6 -0.0421 -6.3543 2.1862 21 7 -0.3957 -6.9032 0.8746 22 6 -0.7138 -8.2293 0.7506 23 1 -0.7045 -8.8705 1.6196 24 6 -1.0484 -8.7495 -0.4921 25 7 -1.3546 -10.0240 -0.6113 26 14 -1.0653 -7.6403 -1.9951 27 1 0.2771 -7.6469 -2.6303 28 1 -2.0742 -8.1366 -2.9652 29 1 -1.4120 -6.2559 -1.5848 30 6 1.5186 -4.6778 1.1827 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3633 -0.8897 -0.5144 34 1 4.9553 -2.3276 0.4389 35 1 6.1088 0.5877 0.3583 36 1 7.0491 -0.9393 0.7897 37 1 6.5348 -1.9031 -1.5001 38 1 5.5942 -0.3767 -1.9320 39 1 2.9174 -2.9594 2.9694 40 1 2.1990 -1.4895 2.2651 41 1 0.9489 -2.3305 4.2870 42 1 -0.0552 -2.2771 2.8176 43 1 -0.9145 -5.5422 4.4079 44 1 -0.5397 -4.0466 5.2979 45 1 -1.5778 -3.9867 3.8532 46 1 0.8352 -6.8732 2.5726 47 1 -0.8768 -6.4900 2.8738 48 1 -0.4045 -6.3272 0.0941 49 1 -1.5881 -10.3876 -1.4797 50 1 2.3418 -5.2562 1.6020 51 1 1.3139 -5.0169 0.1671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132993334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:38 Heat of formation + Delta-G solvation = 37.708585 kcal Electronic energy + Delta-G solvation = -31962.962760 eV Core-core repulsion = 27865.751147 eV Total energy + Delta-G solvation = -4097.211613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.04582 -41.42547 -39.29686 -38.37636 -36.80369 -35.76014 -35.07566 -33.71955 -32.91274 -31.83052 -29.92638 -29.35100 -27.79140 -25.89637 -24.68338 -24.60388 -23.97601 -23.33472 -22.59096 -21.60045 -20.80852 -20.23033 -19.63688 -19.02571 -18.57328 -17.73870 -17.31144 -16.96899 -16.73941 -16.08626 -15.93110 -15.61915 -15.44085 -15.15803 -14.86891 -14.66540 -14.49320 -14.38793 -14.29695 -14.20096 -14.10794 -13.94314 -13.41648 -13.26611 -13.11862 -12.90597 -12.69806 -12.67580 -12.57282 -12.46585 -12.23831 -12.20459 -12.06914 -11.89394 -11.82673 -11.48966 -11.47450 -11.28617 -11.22736 -11.01321 -10.93280 -10.24389 -9.81072 -9.29693 -8.06605 -5.37843 0.11337 0.73413 1.16848 1.32119 1.36072 1.39953 1.55678 1.96796 2.42481 2.73235 2.93643 3.08140 3.25879 3.40378 3.51315 3.58148 3.72640 3.75496 3.82036 3.91369 3.96374 4.01339 4.11244 4.21018 4.32287 4.37180 4.44084 4.48406 4.49570 4.55085 4.60617 4.71054 4.72543 4.75707 4.78539 4.87850 4.90605 4.93049 4.99114 5.01946 5.05129 5.11004 5.17495 5.19928 5.22622 5.37738 5.48473 5.56171 5.74336 6.18284 6.18824 6.88875 7.04871 7.06745 7.82653 7.98633 9.15097 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011265 B = 0.003322 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.007711 B = 8426.477195 C = 9303.280744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.367 5.367 4 O 0.097 5.903 5 C 0.064 3.936 6 C -0.117 4.117 7 C -0.135 4.135 8 C -0.160 4.160 9 C -0.260 4.260 10 C 0.598 3.402 11 O -0.575 6.575 12 N -0.590 5.590 13 C 0.106 3.894 14 C -0.120 4.120 15 C -0.077 4.077 16 H 0.088 0.912 17 C -0.147 4.147 18 C -0.093 4.093 19 H 0.060 0.940 20 C 0.159 3.841 21 N -0.762 5.762 22 C -0.227 4.227 23 H 0.066 0.934 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.941 3.059 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.265 1.265 30 C 0.121 3.879 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.032 0.968 47 H 0.040 0.960 48 H 0.361 0.639 49 H 0.258 0.742 50 H 0.085 0.915 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 26.760 10.431 32.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.075 5.075 4 O 0.037 5.963 5 C 0.001 3.999 6 C -0.136 4.136 7 C -0.171 4.171 8 C -0.197 4.197 9 C -0.267 4.267 10 C 0.385 3.615 11 O -0.455 6.455 12 N -0.321 5.321 13 C -0.016 4.016 14 C -0.158 4.158 15 C -0.096 4.096 16 H 0.106 0.894 17 C -0.204 4.204 18 C -0.113 4.113 19 H 0.078 0.922 20 C 0.033 3.967 21 N -0.407 5.407 22 C -0.358 4.358 23 H 0.084 0.916 24 C -0.247 4.247 25 N -0.631 5.631 26 Si 0.770 3.230 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.190 1.190 30 C -0.001 4.001 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.193 0.807 49 H 0.067 0.933 50 H 0.103 0.897 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.906 27.570 9.992 32.455 hybrid contribution -0.683 -1.015 -1.642 2.047 sum 13.223 26.555 8.351 30.818 Atomic orbital electron populations 1.20342 0.83814 1.04358 1.05171 1.25046 0.99472 0.85971 1.00217 1.73619 0.89289 1.23332 1.21295 1.84479 1.21294 1.22386 1.68116 1.23872 0.95929 0.83148 0.96958 1.20670 0.83788 0.99867 1.09299 1.23242 0.95312 1.00230 0.98339 1.23243 1.00002 1.04424 0.92059 1.21604 0.93632 0.94322 1.17126 1.17206 0.76297 0.84547 0.83461 1.90839 1.52702 1.69014 1.32907 1.48124 1.67038 1.10639 1.06253 1.22024 0.99792 0.97444 0.82296 1.21965 0.97030 0.95521 1.01320 1.21068 0.99855 0.95869 0.92761 0.89418 1.21863 0.96887 1.01786 0.99849 1.21648 0.96682 0.95471 0.97464 0.92177 1.20928 0.97940 0.91458 0.86371 1.42878 1.84257 1.06939 1.06667 1.19073 1.36419 0.85760 0.94552 0.91643 1.25306 1.02483 0.96891 1.00017 1.69845 1.55383 1.13558 1.24310 0.85621 0.77441 0.79227 0.80702 1.21113 1.21711 1.19001 1.21608 0.97609 0.80020 1.00858 0.87479 0.88651 0.90982 0.84293 0.87155 0.85027 0.86085 0.88621 0.88702 0.89578 0.87288 0.91938 0.93145 0.90417 0.93292 0.94961 0.94239 0.80659 0.93304 0.89734 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.49 71.24 0.75 -0.69 16 2 C 0.05 1.25 7.55 45.16 0.34 1.59 16 3 N -0.37 -8.45 12.01 -44.78 -0.54 -8.99 16 4 O 0.10 2.03 10.86 77.00 0.84 2.86 16 5 C 0.06 1.30 7.00 25.48 0.18 1.48 16 6 C -0.12 -1.74 6.15 -11.54 -0.07 -1.81 16 7 C -0.13 -1.16 10.19 30.62 0.31 -0.85 16 8 C -0.16 -1.97 10.24 30.62 0.31 -1.65 16 9 C -0.26 -6.35 4.19 -18.74 -0.08 -6.43 16 10 C 0.60 17.79 7.52 86.66 0.65 18.44 16 11 O -0.58 -23.09 16.52 -4.06 -0.07 -23.16 16 12 N -0.59 -14.47 2.97 -822.74 -2.44 -16.91 16 13 C 0.11 1.64 6.34 86.36 0.55 2.19 16 14 C -0.12 -1.68 5.36 30.67 0.16 -1.52 16 15 C -0.08 -1.43 2.23 -10.77 -0.02 -1.45 16 16 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 17 C -0.15 -2.68 8.82 71.98 0.63 -2.04 16 18 C -0.09 -2.61 1.92 -10.70 -0.02 -2.63 16 19 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 20 C 0.16 5.80 5.41 86.38 0.47 6.26 16 21 N -0.76 -36.60 5.18 -343.44 -1.78 -38.38 16 22 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 23 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 24 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 25 N -0.98 -64.07 13.97 21.65 0.30 -63.77 16 26 Si 0.94 49.00 27.74 68.60 1.90 50.90 16 27 H -0.28 -14.81 7.11 99.48 0.71 -14.11 16 28 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16 29 H -0.26 -13.06 6.52 99.48 0.65 -12.41 16 30 C 0.12 3.59 5.52 86.37 0.48 4.07 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.11 0.90 8.02 -2.38 -0.02 0.88 16 36 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.09 1.27 6.30 -2.39 -0.02 1.25 16 41 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.10 6.30 -2.39 -0.02 1.08 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.04 1.45 6.15 -2.39 -0.01 1.43 16 48 H 0.36 17.47 4.76 -92.70 -0.44 17.03 16 49 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.06 2.23 6.21 -2.38 -0.01 2.21 16 Total: -1.00 -78.82 409.24 4.64 -74.19 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.44 Total: 23.52 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.99 Total: -0.25 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -4.46 Total: -128.06 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.77 Total: -20.30 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.90 Total: 50.90 kcal Total: -78.82 4.64 -74.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132993334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.896 kcal (2) G-P(sol) polarization free energy of solvation -78.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds