Wall clock time and date at job start Wed Apr 1 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30018 * 127.33467 * 2 1 4 4 O 1.20661 * 112.30357 * 180.30292 * 3 2 1 5 5 C 1.33499 * 113.15131 * 359.71522 * 4 3 2 6 6 C 1.50705 * 126.82344 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50127 * 8.65224 * 6 5 4 8 8 C 1.52998 * 117.50211 * 300.02792 * 6 5 4 9 9 C 1.37350 * 106.34285 * 0.02562 * 5 4 3 10 10 C 1.47400 * 128.56264 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00104 * 90.00304 * 10 9 5 12 12 N 1.34777 * 120.00182 * 269.99910 * 10 9 5 13 13 C 1.46928 * 120.63052 * 0.02562 * 12 10 9 14 14 C 1.53187 * 108.77623 * 126.36901 * 13 12 10 15 15 C 1.53036 * 109.33909 * 54.61900 * 14 13 12 16 16 H 1.09003 * 109.46474 * 178.62793 * 15 14 13 17 17 C 1.53002 * 109.46005 * 58.67146 * 15 14 13 18 18 C 1.53042 * 109.54058 * 298.68652 * 15 14 13 19 19 H 1.09003 * 109.46473 * 301.36154 * 18 15 14 20 20 C 1.53008 * 109.52401 * 181.30039 * 18 15 14 21 21 N 1.46495 * 109.46899 * 175.10951 * 20 18 15 22 22 C 1.36940 * 119.99774 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99679 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47048 * 89.99760 * 26 24 22 28 28 H 1.48496 * 109.46918 * 209.99509 * 26 24 22 29 29 H 1.48497 * 109.47502 * 329.99812 * 26 24 22 30 30 C 1.46927 * 120.63332 * 179.97438 * 12 10 9 31 31 H 1.09008 * 109.47244 * 270.14451 * 1 2 3 32 32 H 1.09003 * 109.47396 * 30.14295 * 1 2 3 33 33 H 1.08999 * 109.47233 * 150.14372 * 1 2 3 34 34 H 1.09003 * 115.54130 * 154.35703 * 6 5 4 35 35 H 1.08997 * 117.49545 * 359.97438 * 7 6 5 36 36 H 1.08994 * 117.49728 * 145.01743 * 7 6 5 37 37 H 1.08999 * 117.49919 * 214.98584 * 8 6 5 38 38 H 1.09006 * 117.49487 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.58414 * 6.58067 * 13 12 10 40 40 H 1.08999 * 109.58551 * 246.15992 * 13 12 10 41 41 H 1.09002 * 109.49796 * 174.58834 * 14 13 12 42 42 H 1.09000 * 109.49812 * 294.65558 * 14 13 12 43 43 H 1.08995 * 109.47343 * 60.00237 * 17 15 14 44 44 H 1.08999 * 109.47192 * 180.02562 * 17 15 14 45 45 H 1.09000 * 109.47354 * 299.99859 * 17 15 14 46 46 H 1.08998 * 109.46620 * 295.11024 * 20 18 15 47 47 H 1.08996 * 109.46867 * 55.11028 * 20 18 15 48 48 H 0.97004 * 120.00394 * 0.02562 * 21 20 18 49 49 H 0.97001 * 120.00125 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.58621 * 353.42243 * 30 12 10 51 51 H 1.09005 * 109.58884 * 113.83819 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0059 5 6 3.6493 -0.6007 -0.0048 6 6 4.9712 -1.3245 -0.0115 7 6 6.2364 -0.4867 0.1838 8 6 5.9101 -1.0701 -1.1924 9 6 2.3992 -1.1695 0.0024 10 6 2.0401 -2.5991 0.0058 11 8 1.8974 -3.1877 1.0604 12 7 1.8698 -3.2540 -1.1597 13 6 2.0392 -2.5568 -2.4419 14 6 3.0435 -3.3351 -3.2975 15 6 2.5795 -4.7875 -3.4285 16 1 3.2799 -5.3373 -4.0571 17 6 1.1884 -4.8227 -4.0645 18 6 2.5220 -5.4335 -2.0423 19 1 3.5075 -5.3870 -1.5788 20 6 2.0892 -6.8949 -2.1767 21 7 2.1471 -7.5439 -0.8646 22 6 1.8012 -8.8628 -0.7373 23 1 1.4863 -9.4246 -1.6042 24 6 1.8555 -9.4776 0.5060 25 7 2.2398 -8.7931 1.5625 26 14 1.3845 -11.2769 0.6796 27 1 2.5879 -12.1247 0.4840 28 1 0.8269 -11.5140 2.0353 29 1 0.3643 -11.6224 -0.3427 30 6 1.5124 -4.6791 -1.1725 31 1 -0.3634 0.0026 1.0277 32 1 -0.3634 0.8887 -0.5161 33 1 -0.3633 -0.8913 -0.5116 34 1 4.9601 -2.3272 0.4159 35 1 6.1127 0.5881 0.3166 36 1 7.0580 -0.9381 0.7398 37 1 6.5170 -1.9053 -1.5419 38 1 5.5718 -0.3789 -1.9644 39 1 2.4148 -1.5493 -2.2631 40 1 1.0811 -2.5052 -2.9591 41 1 3.1061 -2.8825 -4.2871 42 1 4.0242 -3.3080 -2.8224 43 1 1.2287 -4.3637 -5.0522 44 1 0.8575 -5.8571 -4.1574 45 1 0.4876 -4.2726 -3.4364 46 1 1.0694 -6.9380 -2.5588 47 1 2.7578 -7.4098 -2.8665 48 1 2.4296 -7.0392 -0.0858 49 1 2.2781 -9.2228 2.4313 50 1 1.5405 -5.0720 -0.1561 51 1 0.5112 -4.8011 -1.5859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132993337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:48 Heat of formation + Delta-G solvation = 58.591326 kcal Electronic energy + Delta-G solvation = -32170.369486 eV Core-core repulsion = 28074.063417 eV Total energy + Delta-G solvation = -4096.306069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.06281 -40.31841 -38.11143 -37.66368 -35.04568 -34.65170 -33.50233 -32.02459 -31.74069 -29.85153 -29.00607 -27.73929 -26.17975 -25.00981 -24.01238 -23.54409 -23.14331 -22.74630 -21.22015 -20.36117 -19.58170 -18.35404 -17.96082 -17.58829 -17.03828 -16.67001 -16.23860 -15.88678 -15.10798 -14.96742 -14.92363 -14.55581 -14.14748 -13.73282 -13.61230 -13.56074 -13.49192 -13.38582 -13.07125 -12.97147 -12.73747 -12.46964 -12.30435 -12.00952 -11.93261 -11.68594 -11.65729 -11.41245 -11.27610 -11.08768 -10.92682 -10.80451 -10.78359 -10.65180 -10.30972 -10.23961 -10.14929 -9.99145 -9.85298 -9.59981 -9.29793 -8.84050 -8.51099 -6.87979 -5.71022 -3.00805 1.06716 1.72374 2.43058 2.57068 3.05946 3.46166 3.46357 3.51005 3.53312 3.84120 3.94268 4.36840 4.41598 4.53469 4.59262 4.62197 4.69941 4.82505 4.89727 5.03017 5.14585 5.18739 5.23497 5.24927 5.27174 5.32424 5.35160 5.38501 5.52509 5.54658 5.60606 5.64836 5.67297 5.68644 5.72931 5.78326 5.82083 5.87893 5.93317 6.00508 6.12887 6.30303 6.32858 6.34267 6.54692 6.61564 6.76396 6.88117 7.40170 7.73466 8.02302 8.16562 8.46666 9.57771 10.15559 10.49540 11.51225 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003006 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.146245 B = 9311.753446 C = 9599.912748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.047 3.953 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.232 4.232 10 C 0.594 3.406 11 O -0.514 6.514 12 N -0.597 5.597 13 C 0.109 3.891 14 C -0.127 4.127 15 C -0.084 4.084 16 H 0.074 0.926 17 C -0.153 4.153 18 C -0.101 4.101 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.120 3.880 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.104 0.896 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 21.213 -10.854 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.063 5.063 4 O 0.033 5.967 5 C -0.016 4.016 6 C -0.113 4.113 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.239 4.239 10 C 0.379 3.621 11 O -0.389 6.389 12 N -0.330 5.330 13 C -0.014 4.014 14 C -0.165 4.165 15 C -0.103 4.103 16 H 0.093 0.907 17 C -0.210 4.210 18 C -0.121 4.121 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.001 4.001 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.122 0.878 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.169 22.038 -10.304 24.534 hybrid contribution -0.263 -1.641 0.440 1.720 sum 2.905 20.397 -9.864 22.843 Atomic orbital electron populations 1.20223 0.85110 1.04009 1.04113 1.24735 0.98572 0.86497 1.01041 1.73613 0.89044 1.23218 1.20437 1.84489 1.21519 1.22422 1.68263 1.23500 0.95558 0.83308 0.99265 1.20552 0.84013 0.99777 1.06960 1.23089 0.96909 1.00169 0.99652 1.23122 1.00751 1.03846 0.91523 1.21842 0.92426 0.95514 1.14129 1.16930 0.77410 0.83796 0.83985 1.90905 1.49799 1.67558 1.30606 1.48069 1.68461 1.11402 1.05030 1.21713 0.99835 0.95677 0.84163 1.21930 0.98967 0.96025 0.99612 1.21076 0.97722 0.94931 0.96618 0.90740 1.21991 0.96673 1.02659 0.99715 1.21675 0.99699 0.96125 0.94560 0.90792 1.20676 0.97604 0.88685 0.89756 1.42419 1.81223 1.09893 1.04251 1.19190 1.37452 0.87042 0.93653 0.91258 1.24745 1.02318 0.98063 0.95688 1.69670 1.53610 1.35571 0.98890 0.86224 0.77974 0.85259 0.76919 1.21787 1.21788 1.20800 1.21811 0.97706 0.77254 1.03379 0.89482 0.89944 0.89799 0.84108 0.87692 0.87279 0.87133 0.88062 0.90736 0.91039 0.90893 0.91366 0.93144 0.91715 0.92486 0.95927 0.96142 0.78129 0.93484 0.87753 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.00 0.38 -0.36 16 2 C 0.05 0.66 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.53 12.01 34.78 0.42 -4.12 16 4 O 0.09 1.13 10.86 18.63 0.20 1.33 16 5 C 0.05 0.55 6.90 -34.63 -0.24 0.31 16 6 C -0.09 -0.91 6.15 -91.77 -0.56 -1.48 16 7 C -0.16 -1.17 10.18 -26.73 -0.27 -1.44 16 8 C -0.16 -1.09 10.23 -26.73 -0.27 -1.37 16 9 C -0.23 -3.11 4.22 -102.90 -0.43 -3.55 16 10 C 0.59 9.41 7.52 -12.53 -0.09 9.32 16 11 O -0.51 -10.58 16.52 5.27 0.09 -10.50 16 12 N -0.60 -8.22 2.97 -174.08 -0.52 -8.74 16 13 C 0.11 1.12 5.87 -3.71 -0.02 1.10 16 14 C -0.13 -1.20 5.62 -26.62 -0.15 -1.35 16 15 C -0.08 -0.97 2.71 -90.58 -0.25 -1.22 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.15 -1.63 8.12 37.16 0.30 -1.33 16 18 C -0.10 -1.56 2.15 -90.53 -0.19 -1.76 16 19 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.16 3.11 5.19 -4.04 -0.02 3.09 16 21 N -0.73 -18.51 5.38 -59.91 -0.32 -18.84 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 26 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.12 1.93 5.05 -3.74 -0.02 1.92 16 31 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.14 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.10 0.73 8.02 -51.93 -0.42 0.31 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.73 6.26 -51.93 -0.32 0.41 16 40 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.77 6.57 -51.93 -0.34 0.42 16 45 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 46 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.38 10.42 6.89 -40.82 -0.28 10.14 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.10 2.14 6.20 -51.93 -0.32 1.82 16 51 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -33.91 406.16 -9.04 -42.95 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.03 Total: 7.59 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.70 Total: -5.45 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.29 Total: -9.16 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.91 -9.04 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132993337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.540 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds