Wall clock time and date at job start Wed Apr 1 2020 04:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30018 * 127.33467 * 2 1 4 4 O 1.20661 * 112.30357 * 180.30292 * 3 2 1 5 5 C 1.33499 * 113.15131 * 359.71522 * 4 3 2 6 6 C 1.50705 * 126.82344 * 179.97438 * 5 4 3 7 7 C 1.52999 * 117.50127 * 8.65224 * 6 5 4 8 8 C 1.52998 * 117.50211 * 300.02792 * 6 5 4 9 9 C 1.37350 * 106.34285 * 0.02562 * 5 4 3 10 10 C 1.47400 * 128.56264 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00104 * 90.00304 * 10 9 5 12 12 N 1.34777 * 120.00182 * 269.99910 * 10 9 5 13 13 C 1.46928 * 120.63052 * 0.02562 * 12 10 9 14 14 C 1.53187 * 108.77623 * 126.36901 * 13 12 10 15 15 C 1.53036 * 109.33909 * 54.61900 * 14 13 12 16 16 H 1.09003 * 109.46474 * 178.62793 * 15 14 13 17 17 C 1.53002 * 109.46005 * 58.67146 * 15 14 13 18 18 C 1.53042 * 109.54058 * 298.68652 * 15 14 13 19 19 H 1.09003 * 109.46473 * 301.36154 * 18 15 14 20 20 C 1.53008 * 109.52401 * 181.30039 * 18 15 14 21 21 N 1.46495 * 109.46899 * 175.10951 * 20 18 15 22 22 C 1.36940 * 119.99774 * 179.97438 * 21 20 18 23 23 H 1.07994 * 120.00286 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99679 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47048 * 89.99760 * 26 24 22 28 28 H 1.48496 * 109.46918 * 209.99509 * 26 24 22 29 29 H 1.48497 * 109.47502 * 329.99812 * 26 24 22 30 30 C 1.46927 * 120.63332 * 179.97438 * 12 10 9 31 31 H 1.09008 * 109.47244 * 270.14451 * 1 2 3 32 32 H 1.09003 * 109.47396 * 30.14295 * 1 2 3 33 33 H 1.08999 * 109.47233 * 150.14372 * 1 2 3 34 34 H 1.09003 * 115.54130 * 154.35703 * 6 5 4 35 35 H 1.08997 * 117.49545 * 359.97438 * 7 6 5 36 36 H 1.08994 * 117.49728 * 145.01743 * 7 6 5 37 37 H 1.08999 * 117.49919 * 214.98584 * 8 6 5 38 38 H 1.09006 * 117.49487 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.58414 * 6.58067 * 13 12 10 40 40 H 1.08999 * 109.58551 * 246.15992 * 13 12 10 41 41 H 1.09002 * 109.49796 * 174.58834 * 14 13 12 42 42 H 1.09000 * 109.49812 * 294.65558 * 14 13 12 43 43 H 1.08995 * 109.47343 * 60.00237 * 17 15 14 44 44 H 1.08999 * 109.47192 * 180.02562 * 17 15 14 45 45 H 1.09000 * 109.47354 * 299.99859 * 17 15 14 46 46 H 1.08998 * 109.46620 * 295.11024 * 20 18 15 47 47 H 1.08996 * 109.46867 * 55.11028 * 20 18 15 48 48 H 0.97004 * 120.00394 * 0.02562 * 21 20 18 49 49 H 0.97001 * 120.00125 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.58621 * 353.42243 * 30 12 10 51 51 H 1.09005 * 109.58884 * 113.83819 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0059 5 6 3.6493 -0.6007 -0.0048 6 6 4.9712 -1.3245 -0.0115 7 6 6.2364 -0.4867 0.1838 8 6 5.9101 -1.0701 -1.1924 9 6 2.3992 -1.1695 0.0024 10 6 2.0401 -2.5991 0.0058 11 8 1.8974 -3.1877 1.0604 12 7 1.8698 -3.2540 -1.1597 13 6 2.0392 -2.5568 -2.4419 14 6 3.0435 -3.3351 -3.2975 15 6 2.5795 -4.7875 -3.4285 16 1 3.2799 -5.3373 -4.0571 17 6 1.1884 -4.8227 -4.0645 18 6 2.5220 -5.4335 -2.0423 19 1 3.5075 -5.3870 -1.5788 20 6 2.0892 -6.8949 -2.1767 21 7 2.1471 -7.5439 -0.8646 22 6 1.8012 -8.8628 -0.7373 23 1 1.4863 -9.4246 -1.6042 24 6 1.8555 -9.4776 0.5060 25 7 2.2398 -8.7931 1.5625 26 14 1.3845 -11.2769 0.6796 27 1 2.5879 -12.1247 0.4840 28 1 0.8269 -11.5140 2.0353 29 1 0.3643 -11.6224 -0.3427 30 6 1.5124 -4.6791 -1.1725 31 1 -0.3634 0.0026 1.0277 32 1 -0.3634 0.8887 -0.5161 33 1 -0.3633 -0.8913 -0.5116 34 1 4.9601 -2.3272 0.4159 35 1 6.1127 0.5881 0.3166 36 1 7.0580 -0.9381 0.7398 37 1 6.5170 -1.9053 -1.5419 38 1 5.5718 -0.3789 -1.9644 39 1 2.4148 -1.5493 -2.2631 40 1 1.0811 -2.5052 -2.9591 41 1 3.1061 -2.8825 -4.2871 42 1 4.0242 -3.3080 -2.8224 43 1 1.2287 -4.3637 -5.0522 44 1 0.8575 -5.8571 -4.1574 45 1 0.4876 -4.2726 -3.4364 46 1 1.0694 -6.9380 -2.5588 47 1 2.7578 -7.4098 -2.8665 48 1 2.4296 -7.0392 -0.0858 49 1 2.2781 -9.2228 2.4313 50 1 1.5405 -5.0720 -0.1561 51 1 0.5112 -4.8011 -1.5859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132993337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:47 Heat of formation + Delta-G solvation = 38.104728 kcal Electronic energy + Delta-G solvation = -32171.257852 eV Core-core repulsion = 28074.063417 eV Total energy + Delta-G solvation = -4097.194435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.01709 -41.50357 -39.34750 -38.37136 -36.65518 -35.73141 -34.84121 -33.50902 -32.83839 -31.47507 -29.84584 -28.77009 -27.66107 -26.26751 -24.97632 -24.83953 -24.46556 -23.31962 -22.58457 -21.46512 -20.56246 -19.58457 -18.93943 -18.90886 -18.57910 -17.72426 -17.26709 -16.89323 -16.75543 -16.21192 -15.97604 -15.71680 -15.40939 -15.27958 -14.79915 -14.60030 -14.49867 -14.36806 -14.32434 -14.15945 -13.91011 -13.78862 -13.09924 -13.05938 -13.03529 -12.86796 -12.64742 -12.55102 -12.45156 -12.42815 -12.20864 -12.14529 -12.02468 -11.89666 -11.74614 -11.46767 -11.46301 -11.25619 -11.19774 -10.95441 -10.91002 -10.21738 -9.69653 -8.98836 -7.93497 -5.23491 0.13261 0.75659 1.22577 1.45946 1.48427 1.56442 1.56926 1.98892 2.56182 2.79010 2.95862 3.08210 3.39734 3.43821 3.58789 3.69324 3.78341 3.82953 3.86197 3.96912 4.05402 4.12880 4.20222 4.25613 4.38402 4.41066 4.46341 4.48112 4.51075 4.58079 4.65654 4.69311 4.74232 4.77765 4.82303 4.90276 4.92056 4.98492 5.02367 5.04060 5.11717 5.18317 5.20045 5.26834 5.30982 5.39948 5.45798 5.50384 5.61461 6.24093 6.27249 6.94653 7.07731 7.32973 8.10073 8.31484 9.29912 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003006 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.146245 B = 9311.753446 C = 9599.912748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.367 5.367 4 O 0.097 5.903 5 C 0.065 3.935 6 C -0.125 4.125 7 C -0.149 4.149 8 C -0.133 4.133 9 C -0.259 4.259 10 C 0.596 3.404 11 O -0.577 6.577 12 N -0.587 5.587 13 C 0.105 3.895 14 C -0.120 4.120 15 C -0.078 4.078 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.088 4.088 19 H 0.054 0.946 20 C 0.160 3.840 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.266 1.266 30 C 0.129 3.871 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.026 0.974 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.052 0.948 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 22.649 -14.180 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.075 5.075 4 O 0.037 5.963 5 C 0.002 3.998 6 C -0.144 4.144 7 C -0.186 4.186 8 C -0.170 4.170 9 C -0.267 4.267 10 C 0.383 3.617 11 O -0.457 6.457 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.158 4.158 15 C -0.097 4.097 16 H 0.103 0.897 17 C -0.208 4.208 18 C -0.107 4.107 19 H 0.072 0.928 20 C 0.033 3.967 21 N -0.391 5.391 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.191 1.191 30 C 0.006 3.994 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.044 0.956 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.591 23.500 -13.737 27.456 hybrid contribution -0.364 -2.051 1.413 2.517 sum 3.227 21.449 -12.324 24.947 Atomic orbital electron populations 1.20352 0.83463 1.05207 1.04537 1.25096 0.99636 0.85791 1.00121 1.73599 0.89252 1.23308 1.21347 1.84480 1.21370 1.22198 1.68228 1.23783 0.95827 0.83170 0.97015 1.20562 0.84281 0.99278 1.10328 1.23223 0.95207 1.00202 0.99973 1.23257 0.98538 1.04056 0.91157 1.21612 0.93723 0.94298 1.17033 1.17252 0.76326 0.84659 0.83498 1.90869 1.52777 1.69119 1.32887 1.48090 1.67134 1.10378 1.06183 1.22032 1.01378 0.95900 0.82314 1.21928 0.98247 0.94299 1.01288 1.21060 0.98980 0.96113 0.93507 0.89740 1.21972 0.95573 1.02067 1.01164 1.21525 0.97935 0.94032 0.97254 0.92796 1.20868 0.98061 0.90725 0.87020 1.42684 1.81008 1.09389 1.05999 1.19660 1.35792 0.88262 0.93862 0.90280 1.25615 1.03341 1.02525 0.95508 1.69862 1.55821 1.37383 0.99176 0.85131 0.77922 0.80018 0.76650 1.21289 1.22526 1.19071 1.21490 0.98474 0.78855 1.00552 0.89420 0.87694 0.89577 0.86246 0.87008 0.86149 0.85908 0.86780 0.89663 0.89073 0.87132 0.91584 0.90153 0.93171 0.92730 0.95145 0.95644 0.79817 0.94191 0.92958 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.49 71.23 0.75 -0.68 16 2 C 0.06 1.34 7.59 45.15 0.34 1.68 16 3 N -0.37 -8.93 12.01 -44.77 -0.54 -9.46 16 4 O 0.10 2.20 10.86 76.92 0.84 3.04 16 5 C 0.07 1.52 6.90 25.48 0.18 1.69 16 6 C -0.13 -2.38 6.15 -11.54 -0.07 -2.45 16 7 C -0.15 -1.90 10.18 30.59 0.31 -1.59 16 8 C -0.13 -1.55 10.23 30.59 0.31 -1.24 16 9 C -0.26 -7.03 4.22 -18.75 -0.08 -7.11 16 10 C 0.60 19.86 7.52 86.66 0.65 20.51 16 11 O -0.58 -25.89 16.52 -4.06 -0.07 -25.96 16 12 N -0.59 -16.39 2.97 -822.92 -2.45 -18.83 16 13 C 0.10 1.90 5.87 86.36 0.51 2.41 16 14 C -0.12 -1.85 5.62 30.67 0.17 -1.68 16 15 C -0.08 -1.59 2.71 -10.77 -0.03 -1.62 16 16 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.15 -2.74 8.12 71.98 0.58 -2.16 16 18 C -0.09 -2.74 2.15 -10.73 -0.02 -2.76 16 19 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 20 C 0.16 6.23 5.19 86.38 0.45 6.68 16 21 N -0.75 -39.16 5.38 -343.46 -1.85 -41.00 16 22 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 25 N -0.97 -62.51 13.06 21.65 0.28 -62.22 16 26 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 C 0.13 4.34 5.05 86.34 0.44 4.78 16 31 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.11 1.30 8.02 -2.39 -0.02 1.28 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 1.44 6.26 -2.39 -0.01 1.43 16 40 H 0.09 1.37 6.70 -2.39 -0.02 1.35 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.07 6.57 -2.39 -0.02 1.05 16 45 H 0.05 1.02 4.98 -2.39 -0.01 1.01 16 46 H 0.03 1.16 6.73 -2.39 -0.02 1.15 16 47 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 21.34 6.89 -92.71 -0.64 20.70 16 49 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 50 H 0.05 2.35 6.20 -2.39 -0.01 2.33 16 51 H 0.08 2.49 6.70 -2.38 -0.02 2.48 16 Total: -1.00 -78.34 406.16 4.35 -73.99 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.31 Total: 31.85 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.79 Total: -0.77 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -4.55 Total: -131.53 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.77 Total: -22.92 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -78.34 4.35 -73.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132993337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.094 kcal (2) G-P(sol) polarization free energy of solvation -78.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds