Wall clock time and date at job start Wed Apr 1 2020 04:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41386 * 126.79836 * 2 1 4 4 C 1.35447 * 103.98229 * 179.88859 * 3 2 1 5 5 C 1.50707 * 126.77551 * 180.14276 * 4 3 2 6 6 C 1.50699 * 115.54699 * 29.71607 * 5 4 3 7 7 O 1.21283 * 119.99390 * 245.24904 * 6 5 4 8 8 N 1.34771 * 119.99938 * 65.25605 * 6 5 4 9 9 C 1.46921 * 120.63431 * 5.25367 * 8 6 5 10 10 C 1.53192 * 108.77902 * 126.37148 * 9 8 6 11 11 C 1.53040 * 109.31345 * 54.63282 * 10 9 8 12 12 H 1.09006 * 109.46094 * 178.61945 * 11 10 9 13 13 C 1.52999 * 109.45947 * 58.64342 * 11 10 9 14 14 C 1.53046 * 109.53707 * 298.63839 * 11 10 9 15 15 H 1.09002 * 109.49710 * 301.40867 * 14 11 10 16 16 C 1.53008 * 109.49436 * 181.31580 * 14 11 10 17 17 N 1.46497 * 109.46797 * 175.00051 * 16 14 11 18 18 C 1.36931 * 120.00186 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99859 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00578 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00523 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99622 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47076 * 89.99961 * 22 20 18 24 24 H 1.48508 * 109.47053 * 209.99574 * 22 20 18 25 25 H 1.48493 * 109.47345 * 329.99393 * 22 20 18 26 26 C 1.46928 * 120.62737 * 184.97503 * 8 6 5 27 27 C 1.53003 * 117.49519 * 244.00738 * 5 4 3 28 28 C 1.53002 * 117.49669 * 175.38751 * 5 4 3 29 29 O 1.34044 * 106.44764 * 0.36364 * 4 3 2 30 30 N 1.20920 * 111.56520 * 359.75508 * 29 4 3 31 31 H 1.08996 * 109.47067 * 269.70919 * 1 2 3 32 32 H 1.09005 * 109.46540 * 149.71223 * 1 2 3 33 33 H 1.09000 * 109.46928 * 29.71100 * 1 2 3 34 34 H 1.08002 * 128.00816 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.58544 * 246.15530 * 9 8 6 36 36 H 1.08997 * 109.58900 * 6.44205 * 9 8 6 37 37 H 1.08999 * 109.50445 * 174.58937 * 10 9 8 38 38 H 1.09007 * 109.49426 * 294.68337 * 10 9 8 39 39 H 1.09002 * 109.46789 * 60.00084 * 13 11 10 40 40 H 1.09000 * 109.47024 * 180.02562 * 13 11 10 41 41 H 1.08998 * 109.47145 * 300.00143 * 13 11 10 42 42 H 1.08989 * 109.46965 * 294.99858 * 16 14 11 43 43 H 1.08996 * 109.47082 * 55.00068 * 16 14 11 44 44 H 0.97010 * 120.00033 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00440 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.58838 * 353.41312 * 26 8 6 47 47 H 1.08994 * 109.58891 * 113.84234 * 26 8 6 48 48 H 1.09001 * 117.49834 * 359.97438 * 27 5 4 49 49 H 1.08999 * 117.49522 * 145.02232 * 27 5 4 50 50 H 1.08994 * 117.49543 * 214.97726 * 28 5 4 51 51 H 1.08993 * 117.50055 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 0.0026 5 6 4.9022 1.3697 0.0067 6 6 4.8633 2.7163 0.6821 7 8 5.0362 3.7257 0.0324 8 7 4.6365 2.7988 2.0080 9 6 4.5396 1.5836 2.8280 10 6 5.5234 1.6976 3.9968 11 6 5.2525 2.9952 4.7617 12 1 5.9351 3.0668 5.6085 13 6 3.8090 2.9960 5.2689 14 6 5.4664 4.1917 3.8317 15 1 6.4875 4.1780 3.4503 16 6 5.2273 5.4895 4.6061 17 7 5.5475 6.6347 3.7505 18 6 5.4084 7.9090 4.2318 19 1 5.0631 8.0699 5.2424 20 6 5.7124 8.9942 3.4213 21 7 5.5782 10.2191 3.8838 22 14 6.3104 8.7160 1.6736 23 1 5.1459 8.6712 0.7532 24 1 7.2127 9.8266 1.2765 25 1 7.0480 7.4292 1.6017 26 6 4.4876 4.1061 2.6620 27 6 5.8156 1.2157 -1.2111 28 6 6.1959 0.5605 0.1182 29 8 3.4538 -0.7252 -0.0043 30 7 2.2869 -1.0422 -0.0057 31 1 -0.3633 -0.0052 1.0276 32 1 -0.3632 -0.8875 -0.5183 33 1 -0.3633 0.8926 -0.5093 34 1 2.0709 2.1744 0.0004 35 1 3.5250 1.4826 3.2131 36 1 4.7888 0.7128 2.2217 37 1 5.3937 0.8470 4.6659 38 1 6.5439 1.7074 3.6137 39 1 3.6566 2.1445 5.9322 40 1 3.6157 3.9203 5.8134 41 1 3.1263 2.9238 4.4223 42 1 4.1820 5.5439 4.9098 43 1 5.8640 5.5074 5.4905 44 1 5.8581 6.4902 2.8428 45 1 5.7909 10.9774 3.3175 46 1 4.7049 4.8994 1.9468 47 1 3.4686 4.2150 3.0333 48 1 5.4766 0.5623 -2.0150 49 1 6.3885 2.0885 -1.5241 50 1 7.0190 1.0023 0.6797 51 1 6.1070 -0.5235 0.1890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133050133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:51 Heat of formation + Delta-G solvation = 66.898488 kcal Electronic energy + Delta-G solvation = -32257.835450 eV Core-core repulsion = 28161.889606 eV Total energy + Delta-G solvation = -4095.945844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.27126 -40.85687 -38.80274 -36.90070 -35.18145 -35.08154 -33.65384 -31.97607 -31.81975 -30.32435 -29.03138 -27.92279 -26.56757 -25.16505 -24.12412 -23.52074 -23.00433 -22.77654 -21.23012 -20.96523 -19.47618 -18.48006 -17.98784 -17.82405 -17.42904 -16.84144 -16.26773 -15.63626 -15.31292 -15.05701 -14.90057 -14.62029 -14.14559 -13.89438 -13.83552 -13.70459 -13.56403 -13.40665 -13.31585 -13.12982 -12.77372 -12.70388 -12.53529 -12.14991 -12.00095 -11.79906 -11.73429 -11.59516 -11.45424 -11.23171 -11.17955 -11.08139 -10.84604 -10.73384 -10.39129 -10.31614 -10.21721 -10.07343 -9.88053 -9.55000 -9.48567 -8.87124 -8.65421 -7.20808 -5.74516 -3.10158 1.04745 1.88563 2.06033 2.62898 2.92269 3.30689 3.43889 3.48852 3.52070 3.84734 3.85934 4.08489 4.33466 4.40438 4.59079 4.63419 4.65735 4.75429 4.76880 4.89490 5.01598 5.11387 5.12660 5.14537 5.18181 5.20222 5.26491 5.37471 5.41630 5.43711 5.49677 5.50730 5.56409 5.60810 5.62527 5.68023 5.72848 5.77349 5.78684 5.85298 5.94462 6.16160 6.19768 6.23241 6.36480 6.43886 6.64437 6.75302 7.24422 7.92036 7.97864 8.00988 8.44418 9.23462 9.96301 10.15382 11.43745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003238 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.733258 B = 8645.592907 C = 9220.156459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.215 4.215 4 C 0.014 3.986 5 C -0.092 4.092 6 C 0.557 3.443 7 O -0.519 6.519 8 N -0.598 5.598 9 C 0.107 3.893 10 C -0.128 4.128 11 C -0.084 4.084 12 H 0.077 0.923 13 C -0.154 4.154 14 C -0.106 4.106 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.117 3.883 27 C -0.125 4.125 28 C -0.147 4.147 29 O 0.101 5.899 30 N -0.364 5.364 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.118 0.882 50 H 0.112 0.888 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -26.979 -5.518 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C -0.236 4.236 4 C -0.050 4.050 5 C -0.097 4.097 6 C 0.342 3.658 7 O -0.394 6.394 8 N -0.330 5.330 9 C -0.016 4.016 10 C -0.166 4.166 11 C -0.103 4.103 12 H 0.095 0.905 13 C -0.211 4.211 14 C -0.126 4.126 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.004 4.004 27 C -0.162 4.162 28 C -0.185 4.185 29 O 0.035 5.965 30 N -0.069 5.069 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.188 0.812 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.127 0.873 49 H 0.136 0.864 50 H 0.130 0.870 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.906 -27.549 -5.711 28.560 hybrid contribution 0.284 0.792 -1.151 1.426 sum -4.622 -26.757 -6.862 28.007 Atomic orbital electron populations 1.20194 0.85710 1.03907 1.03599 1.23582 0.99125 0.88520 1.02403 1.22378 0.90847 1.01349 1.09075 1.22785 0.95437 0.83615 1.03153 1.19395 0.87654 0.94949 1.07656 1.18900 0.76941 0.87996 0.81939 1.90780 1.48569 1.36057 1.64036 1.48042 1.70333 1.08151 1.06499 1.21792 1.00194 0.86809 0.92826 1.21942 0.99459 0.98414 0.96786 1.21066 0.97922 0.93547 0.97763 0.90485 1.21998 0.95948 1.02182 1.00990 1.21671 0.99758 0.95785 0.95372 0.90779 1.20661 0.98247 0.84425 0.92923 1.42781 1.81725 1.02503 1.13286 1.19031 1.37866 0.81214 0.99321 0.89225 1.24651 1.01429 0.95052 0.97825 1.69700 1.54975 0.97195 1.36378 0.86597 0.78928 0.77043 0.86283 1.20893 1.21728 1.20269 1.21734 0.99679 0.83736 0.95259 1.23212 0.98658 1.03475 0.90888 1.23257 0.94453 1.00000 1.00751 1.84796 1.21840 1.21939 1.67951 1.73849 0.89070 1.23732 1.20265 0.89956 0.90487 0.89830 0.81215 0.91146 0.90125 0.90632 0.91386 0.92994 0.91547 0.92539 0.95036 0.95221 0.80542 0.93071 0.88496 0.90712 0.87257 0.86354 0.86990 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.48 36.01 0.38 -0.15 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.22 -2.27 10.59 -39.38 -0.42 -2.68 16 4 C 0.01 0.14 5.53 -35.30 -0.20 -0.05 16 5 C -0.09 -0.94 1.30 -156.81 -0.20 -1.15 16 6 C 0.56 7.59 6.57 -10.99 -0.07 7.52 16 7 O -0.52 -9.29 16.11 5.55 0.09 -9.20 16 8 N -0.60 -7.45 2.98 -173.04 -0.52 -7.96 16 9 C 0.11 1.01 5.46 -3.71 -0.02 0.99 16 10 C -0.13 -1.14 5.63 -26.61 -0.15 -1.29 16 11 C -0.08 -0.92 2.71 -90.58 -0.25 -1.17 16 12 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.15 -1.59 8.11 37.16 0.30 -1.29 16 14 C -0.11 -1.55 2.14 -90.71 -0.19 -1.75 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.17 3.06 5.19 -4.04 -0.02 3.04 16 17 N -0.76 -18.06 5.18 -59.91 -0.31 -18.37 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 22 Si 0.88 23.03 27.74 -169.99 -4.71 18.31 16 23 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 25 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 26 C 0.12 1.75 5.04 -3.93 -0.02 1.73 16 27 C -0.12 -1.09 9.76 -26.73 -0.26 -1.35 16 28 C -0.15 -1.12 9.04 -26.73 -0.24 -1.36 16 29 O 0.10 1.07 10.97 17.17 0.19 1.26 16 30 N -0.36 -4.13 12.07 33.42 0.40 -3.73 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.07 0.65 6.69 -51.93 -0.35 0.30 16 36 H 0.08 0.69 5.13 -51.93 -0.27 0.42 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 41 H 0.06 0.59 4.99 -51.93 -0.26 0.33 16 42 H 0.03 0.58 6.73 -51.94 -0.35 0.23 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.36 8.67 4.75 -40.82 -0.19 8.48 16 45 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 46 H 0.10 1.79 6.19 -51.93 -0.32 1.47 16 47 H 0.07 1.07 6.70 -51.93 -0.35 0.73 16 48 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.12 1.13 7.99 -51.93 -0.42 0.72 16 50 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.11 0.68 8.00 -51.93 -0.42 0.27 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -34.48 398.31 -8.22 -42.70 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.92 Total: 6.34 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.22 Total: -6.37 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.35 Total: -59.04 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.28 Total: -7.94 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.48 -8.22 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133050133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.603 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds