Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41386 * 126.79836 * 2 1 4 4 C 1.35447 * 103.98229 * 179.88859 * 3 2 1 5 5 C 1.50707 * 126.77551 * 180.14276 * 4 3 2 6 6 C 1.50699 * 115.54699 * 29.71607 * 5 4 3 7 7 O 1.21283 * 119.99390 * 245.24904 * 6 5 4 8 8 N 1.34771 * 119.99938 * 65.25605 * 6 5 4 9 9 C 1.46921 * 120.63431 * 5.25367 * 8 6 5 10 10 C 1.53192 * 108.77902 * 126.37148 * 9 8 6 11 11 C 1.53040 * 109.31345 * 54.63282 * 10 9 8 12 12 H 1.09006 * 109.46094 * 178.61945 * 11 10 9 13 13 C 1.52999 * 109.45947 * 58.64342 * 11 10 9 14 14 C 1.53046 * 109.53707 * 298.63839 * 11 10 9 15 15 H 1.09002 * 109.49710 * 301.40867 * 14 11 10 16 16 C 1.53008 * 109.49436 * 181.31580 * 14 11 10 17 17 N 1.46497 * 109.46797 * 175.00051 * 16 14 11 18 18 C 1.36931 * 120.00186 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99859 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00578 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00523 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99622 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47076 * 89.99961 * 22 20 18 24 24 H 1.48508 * 109.47053 * 209.99574 * 22 20 18 25 25 H 1.48493 * 109.47345 * 329.99393 * 22 20 18 26 26 C 1.46928 * 120.62737 * 184.97503 * 8 6 5 27 27 C 1.53003 * 117.49519 * 244.00738 * 5 4 3 28 28 C 1.53002 * 117.49669 * 175.38751 * 5 4 3 29 29 O 1.34044 * 106.44764 * 0.36364 * 4 3 2 30 30 N 1.20920 * 111.56520 * 359.75508 * 29 4 3 31 31 H 1.08996 * 109.47067 * 269.70919 * 1 2 3 32 32 H 1.09005 * 109.46540 * 149.71223 * 1 2 3 33 33 H 1.09000 * 109.46928 * 29.71100 * 1 2 3 34 34 H 1.08002 * 128.00816 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.58544 * 246.15530 * 9 8 6 36 36 H 1.08997 * 109.58900 * 6.44205 * 9 8 6 37 37 H 1.08999 * 109.50445 * 174.58937 * 10 9 8 38 38 H 1.09007 * 109.49426 * 294.68337 * 10 9 8 39 39 H 1.09002 * 109.46789 * 60.00084 * 13 11 10 40 40 H 1.09000 * 109.47024 * 180.02562 * 13 11 10 41 41 H 1.08998 * 109.47145 * 300.00143 * 13 11 10 42 42 H 1.08989 * 109.46965 * 294.99858 * 16 14 11 43 43 H 1.08996 * 109.47082 * 55.00068 * 16 14 11 44 44 H 0.97010 * 120.00033 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00440 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.58838 * 353.41312 * 26 8 6 47 47 H 1.08994 * 109.58891 * 113.84234 * 26 8 6 48 48 H 1.09001 * 117.49834 * 359.97438 * 27 5 4 49 49 H 1.08999 * 117.49522 * 145.02232 * 27 5 4 50 50 H 1.08994 * 117.49543 * 214.97726 * 28 5 4 51 51 H 1.08993 * 117.50055 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 0.0026 5 6 4.9022 1.3697 0.0067 6 6 4.8633 2.7163 0.6821 7 8 5.0362 3.7257 0.0324 8 7 4.6365 2.7988 2.0080 9 6 4.5396 1.5836 2.8280 10 6 5.5234 1.6976 3.9968 11 6 5.2525 2.9952 4.7617 12 1 5.9351 3.0668 5.6085 13 6 3.8090 2.9960 5.2689 14 6 5.4664 4.1917 3.8317 15 1 6.4875 4.1780 3.4503 16 6 5.2273 5.4895 4.6061 17 7 5.5475 6.6347 3.7505 18 6 5.4084 7.9090 4.2318 19 1 5.0631 8.0699 5.2424 20 6 5.7124 8.9942 3.4213 21 7 5.5782 10.2191 3.8838 22 14 6.3104 8.7160 1.6736 23 1 5.1459 8.6712 0.7532 24 1 7.2127 9.8266 1.2765 25 1 7.0480 7.4292 1.6017 26 6 4.4876 4.1061 2.6620 27 6 5.8156 1.2157 -1.2111 28 6 6.1959 0.5605 0.1182 29 8 3.4538 -0.7252 -0.0043 30 7 2.2869 -1.0422 -0.0057 31 1 -0.3633 -0.0052 1.0276 32 1 -0.3632 -0.8875 -0.5183 33 1 -0.3633 0.8926 -0.5093 34 1 2.0709 2.1744 0.0004 35 1 3.5250 1.4826 3.2131 36 1 4.7888 0.7128 2.2217 37 1 5.3937 0.8470 4.6659 38 1 6.5439 1.7074 3.6137 39 1 3.6566 2.1445 5.9322 40 1 3.6157 3.9203 5.8134 41 1 3.1263 2.9238 4.4223 42 1 4.1820 5.5439 4.9098 43 1 5.8640 5.5074 5.4905 44 1 5.8581 6.4902 2.8428 45 1 5.7909 10.9774 3.3175 46 1 4.7049 4.8994 1.9468 47 1 3.4686 4.2150 3.0333 48 1 5.4766 0.5623 -2.0150 49 1 6.3885 2.0885 -1.5241 50 1 7.0190 1.0023 0.6797 51 1 6.1070 -0.5235 0.1890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133050133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = 45.535330 kcal Electronic energy + Delta-G solvation = -32258.761826 eV Core-core repulsion = 28161.889606 eV Total energy + Delta-G solvation = -4096.872220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.05133 -41.85706 -39.81665 -37.81567 -36.81035 -35.83323 -34.91310 -33.69718 -32.59121 -31.92116 -29.65553 -28.86609 -27.94927 -26.27601 -25.00741 -24.59608 -24.30370 -23.50834 -22.59677 -21.94716 -20.52960 -19.71458 -19.13164 -18.81307 -18.65427 -17.73703 -17.28625 -16.81382 -16.47935 -16.28266 -15.99050 -15.87145 -15.41096 -15.17346 -14.81277 -14.64284 -14.59794 -14.32825 -14.23945 -14.20986 -13.99615 -13.87252 -13.50667 -13.36924 -13.12494 -13.00820 -12.71152 -12.63103 -12.53594 -12.41367 -12.23052 -12.14878 -12.04005 -11.93991 -11.88029 -11.75716 -11.41337 -11.30648 -11.03425 -11.00332 -10.91175 -10.27806 -9.70332 -9.31521 -8.06969 -5.38775 0.27054 1.10598 1.13565 1.32747 1.36197 1.40877 1.66282 2.05851 2.42595 2.56001 3.10345 3.16834 3.25248 3.27460 3.50144 3.59834 3.71534 3.75886 3.81494 3.94297 4.00206 4.03584 4.18157 4.22149 4.31985 4.44466 4.45187 4.51981 4.55148 4.60969 4.65184 4.66877 4.73625 4.75128 4.76677 4.82174 4.85712 4.88284 4.96765 5.05973 5.06021 5.14035 5.17663 5.21125 5.26621 5.36492 5.43013 5.56953 5.73261 6.18083 6.24816 6.94401 7.04162 7.15696 7.81611 7.98047 9.14712 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003238 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.733258 B = 8645.592907 C = 9220.156459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 C -0.230 4.230 4 C 0.022 3.978 5 C -0.105 4.105 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.592 5.592 9 C 0.104 3.896 10 C -0.121 4.121 11 C -0.079 4.079 12 H 0.084 0.916 13 C -0.152 4.152 14 C -0.094 4.094 15 H 0.063 0.937 16 C 0.162 3.838 17 N -0.761 5.761 18 C -0.229 4.229 19 H 0.064 0.936 20 C -0.056 4.056 21 N -0.980 5.980 22 Si 0.944 3.056 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.263 1.263 26 C 0.122 3.878 27 C -0.127 4.127 28 C -0.122 4.122 29 O 0.103 5.897 30 N -0.383 5.383 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.165 0.835 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.125 0.875 49 H 0.105 0.895 50 H 0.117 0.883 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -30.836 -5.627 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C -0.252 4.252 4 C -0.042 4.042 5 C -0.109 4.109 6 C 0.341 3.659 7 O -0.451 6.451 8 N -0.323 5.323 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.098 4.098 12 H 0.102 0.898 13 C -0.209 4.209 14 C -0.113 4.113 15 H 0.081 0.919 16 C 0.035 3.965 17 N -0.407 5.407 18 C -0.360 4.360 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.631 5.631 22 Si 0.773 3.227 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.188 1.188 26 C 0.000 4.000 27 C -0.164 4.164 28 C -0.159 4.159 29 O 0.038 5.962 30 N -0.089 5.089 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.194 0.806 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.143 0.857 49 H 0.123 0.877 50 H 0.136 0.864 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.765 -31.492 -5.787 32.372 hybrid contribution 0.176 1.972 -1.020 2.227 sum -4.589 -29.520 -6.807 30.640 Atomic orbital electron populations 1.20340 0.83798 1.04781 1.04618 1.23998 1.00388 0.87883 1.01224 1.22443 0.91422 1.01361 1.09931 1.22716 0.95230 0.83667 1.02593 1.19181 0.88901 0.93784 1.09078 1.19429 0.75769 0.88712 0.81959 1.90750 1.51005 1.38169 1.65173 1.48073 1.69467 1.08166 1.06591 1.22040 1.01062 0.85739 0.92917 1.21935 0.99273 0.98028 0.96608 1.21060 0.98664 0.92784 0.97285 0.89764 1.21974 0.95255 1.02455 1.01185 1.21529 0.98884 0.95366 0.95557 0.91897 1.20864 0.98168 0.84665 0.92755 1.42864 1.81596 1.02329 1.13910 1.19065 1.35655 0.83233 0.98068 0.91834 1.25344 1.02821 0.94868 1.01786 1.69847 1.57208 0.98109 1.37961 0.85572 0.78338 0.77351 0.81452 1.21083 1.21654 1.18815 1.21461 0.99853 0.84267 0.94448 1.23296 0.97984 1.03536 0.91626 1.23436 0.92332 1.00962 0.99123 1.84779 1.21694 1.21657 1.68039 1.73839 0.89407 1.24230 1.21425 0.88771 0.89815 0.88775 0.81783 0.90319 0.88533 0.87456 0.91154 0.90466 0.93228 0.92726 0.94695 0.95156 0.80557 0.93271 0.92421 0.90395 0.85678 0.87650 0.86438 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.48 71.24 0.75 -0.18 16 2 C 0.02 0.43 7.33 43.58 0.32 0.75 16 3 C -0.23 -4.57 10.59 22.40 0.24 -4.33 16 4 C 0.02 0.41 5.53 25.04 0.14 0.55 16 5 C -0.10 -1.98 1.30 -53.67 -0.07 -2.05 16 6 C 0.55 14.82 6.57 87.66 0.58 15.39 16 7 O -0.57 -21.00 16.11 -3.04 -0.05 -21.04 16 8 N -0.59 -14.05 2.98 -819.76 -2.44 -16.50 16 9 C 0.10 1.65 5.46 86.36 0.47 2.12 16 10 C -0.12 -1.68 5.63 30.67 0.17 -1.51 16 11 C -0.08 -1.52 2.71 -10.77 -0.03 -1.55 16 12 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 13 C -0.15 -2.72 8.11 71.98 0.58 -2.14 16 14 C -0.09 -2.65 2.14 -10.86 -0.02 -2.68 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 C 0.16 5.99 5.19 86.38 0.45 6.43 16 17 N -0.76 -36.75 5.18 -343.47 -1.78 -38.53 16 18 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 19 H 0.06 3.99 8.06 -2.91 -0.02 3.96 16 20 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 21 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 22 Si 0.94 48.73 27.74 68.60 1.90 50.63 16 23 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.26 -12.80 6.52 99.48 0.65 -12.15 16 26 C 0.12 3.64 5.04 86.22 0.43 4.07 16 27 C -0.13 -2.00 9.76 30.60 0.30 -1.70 16 28 C -0.12 -1.47 9.04 30.60 0.28 -1.19 16 29 O 0.10 1.93 10.97 71.60 0.79 2.72 16 30 N -0.38 -7.87 12.07 -49.56 -0.60 -8.47 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.08 1.18 6.69 -2.39 -0.02 1.16 16 36 H 0.10 1.28 5.13 -2.39 -0.01 1.27 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 41 H 0.05 1.00 4.99 -2.39 -0.01 0.99 16 42 H 0.04 1.29 6.73 -2.39 -0.02 1.28 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.36 17.47 4.75 -92.70 -0.44 17.03 16 45 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.06 2.20 6.19 -2.38 -0.01 2.18 16 47 H 0.08 2.23 6.70 -2.39 -0.02 2.22 16 48 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.11 1.97 7.99 -2.39 -0.02 1.95 16 50 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.14 1.05 8.00 -2.39 -0.02 1.03 16 Total: -1.00 -77.43 398.31 4.50 -72.93 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.45 Total: 25.59 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.93 Total: -3.47 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -4.52 Total: -127.36 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.74 Total: -18.33 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.90 Total: 50.63 kcal Total: -77.43 4.50 -72.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133050133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.470 kcal (2) G-P(sol) polarization free energy of solvation -77.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds