Wall clock time and date at job start Wed Apr 1 2020 04:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41376 * 126.80265 * 2 1 4 4 C 1.35453 * 103.98931 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.77823 * 179.97438 * 4 3 2 6 6 C 1.50697 * 115.55303 * 330.44939 * 5 4 3 7 7 O 1.21272 * 120.00259 * 124.17251 * 6 5 4 8 8 N 1.34777 * 119.99633 * 304.17207 * 6 5 4 9 9 C 1.46928 * 120.63337 * 354.32166 * 8 6 5 10 10 C 1.53192 * 108.77688 * 233.59037 * 9 8 6 11 11 C 1.53036 * 109.31376 * 305.36398 * 10 9 8 12 12 H 1.09003 * 109.45764 * 301.34560 * 11 10 9 13 13 C 1.53000 * 109.46237 * 181.37306 * 11 10 9 14 14 C 1.53042 * 109.53681 * 61.36431 * 11 10 9 15 15 H 1.08991 * 109.49714 * 58.59168 * 14 11 10 16 16 C 1.53001 * 109.49520 * 178.68694 * 14 11 10 17 17 N 1.46500 * 109.46909 * 184.99946 * 16 14 11 18 18 C 1.36939 * 120.00085 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99769 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00490 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99541 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00558 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47162 * 120.00298 * 22 20 18 25 25 H 1.48497 * 109.47327 * 240.00532 * 22 20 18 26 26 C 1.46924 * 120.62962 * 174.30416 * 8 6 5 27 27 C 1.53001 * 117.49573 * 116.11736 * 5 4 3 28 28 C 1.53001 * 117.49651 * 184.77354 * 5 4 3 29 29 O 1.34041 * 106.43996 * 0.24299 * 4 3 2 30 30 N 1.20920 * 111.56973 * 359.56596 * 29 4 3 31 31 H 1.08995 * 109.47240 * 89.99423 * 1 2 3 32 32 H 1.08998 * 109.46987 * 210.00133 * 1 2 3 33 33 H 1.09000 * 109.47027 * 329.99527 * 1 2 3 34 34 H 1.08006 * 128.00864 * 359.97117 * 3 2 1 35 35 H 1.08993 * 109.58700 * 113.80134 * 9 8 6 36 36 H 1.09003 * 109.58499 * 353.37323 * 9 8 6 37 37 H 1.09001 * 109.49714 * 185.41401 * 10 9 8 38 38 H 1.08997 * 109.49912 * 65.31577 * 10 9 8 39 39 H 1.08995 * 109.46832 * 60.00383 * 13 11 10 40 40 H 1.09006 * 109.47087 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.47001 * 299.99803 * 13 11 10 42 42 H 1.09005 * 109.47429 * 304.99707 * 16 14 11 43 43 H 1.08996 * 109.47352 * 65.00310 * 16 14 11 44 44 H 0.97000 * 120.00236 * 0.02562 * 17 16 14 45 45 H 0.97000 * 119.99671 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.58898 * 6.62090 * 26 8 6 47 47 H 1.09005 * 109.58685 * 246.19767 * 26 8 6 48 48 H 1.09002 * 117.49705 * 214.99954 * 27 5 4 49 49 H 1.09004 * 117.50180 * 0.02562 * 27 5 4 50 50 H 1.08995 * 117.49997 * 359.97438 * 28 5 4 51 51 H 1.09000 * 117.49914 * 144.97607 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 6 4.8643 2.7182 -0.6711 7 8 5.2030 3.7095 -0.0602 8 7 4.4539 2.8225 -1.9507 9 6 4.1592 1.6206 -2.7427 10 6 4.9680 1.6760 -4.0425 11 6 4.6748 2.9926 -4.7654 12 1 3.6072 3.0625 -4.9737 13 6 5.4548 3.0365 -6.0810 14 6 5.0999 4.1675 -3.8816 15 1 6.1622 4.0847 -3.6525 16 6 4.8366 5.4822 -4.6184 17 7 5.3523 6.5994 -3.8233 18 6 5.2298 7.8826 -4.2853 19 1 4.7526 8.0712 -5.2356 20 6 5.7180 8.9412 -3.5317 21 7 6.2992 8.7115 -2.3733 22 14 5.5503 10.6918 -4.1615 23 1 4.8640 10.6805 -5.4784 24 1 4.7542 11.4911 -3.1959 25 1 6.8987 11.2956 -4.3108 26 6 4.2925 4.1403 -2.5799 27 6 5.8136 1.2127 1.2192 28 6 6.1960 0.5606 -0.1118 29 8 3.4537 -0.7253 -0.0046 30 7 2.2868 -1.0423 0.0005 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 2.0710 2.1743 -0.0004 35 1 3.0949 1.5885 -2.9758 36 1 4.4383 0.7322 -2.1763 37 1 4.6867 0.8394 -4.6820 38 1 6.0317 1.6166 -3.8119 39 1 5.1514 2.2006 -6.7112 40 1 5.2457 3.9741 -6.5962 41 1 6.5224 2.9661 -5.8729 42 1 5.3379 5.4631 -5.5862 43 1 3.7640 5.6069 -4.7672 44 1 5.7813 6.4300 -2.9700 45 1 6.6407 9.4512 -1.8469 46 1 4.6595 4.9144 -1.9061 47 1 3.2390 4.3137 -2.7997 48 1 6.3858 2.0849 1.5354 49 1 5.4733 0.5574 2.0211 50 1 6.1071 -0.5232 -0.1850 51 1 7.0196 1.0037 -0.6717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133050134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:54 Heat of formation + Delta-G solvation = 61.058649 kcal Electronic energy + Delta-G solvation = -31994.822603 eV Core-core repulsion = 27898.623525 eV Total energy + Delta-G solvation = -4096.199078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.21560 -40.62540 -38.50682 -36.73464 -35.11389 -34.94412 -33.73128 -31.90851 -31.71932 -29.84470 -28.98934 -28.37077 -26.12096 -24.67085 -23.61848 -23.23113 -23.07827 -22.65439 -21.26297 -20.78761 -19.73507 -18.88982 -17.98896 -17.80064 -17.03598 -16.68765 -16.09599 -15.46503 -14.99142 -14.85960 -14.65054 -14.41414 -13.92062 -13.90085 -13.66777 -13.59589 -13.52310 -13.27949 -13.17653 -13.08082 -12.83870 -12.60397 -12.48650 -11.98677 -11.89675 -11.75113 -11.68219 -11.53048 -11.27927 -11.06034 -11.00145 -10.88113 -10.80646 -10.62644 -10.28320 -10.25662 -10.18287 -9.96822 -9.78109 -9.59045 -9.38021 -8.84887 -8.55669 -6.87392 -5.71177 -3.00767 1.11440 1.94596 2.18834 2.76696 2.98886 3.45042 3.45912 3.51002 3.53682 3.90889 3.94477 4.20761 4.43464 4.50369 4.59670 4.70159 4.75466 4.85005 4.87726 4.95754 5.12239 5.16830 5.21618 5.24336 5.27422 5.30017 5.38249 5.45984 5.49943 5.59705 5.60107 5.62336 5.66834 5.71808 5.79538 5.80671 5.84438 5.90574 5.93750 6.01511 6.15209 6.21399 6.31342 6.43687 6.53822 6.58987 6.80329 6.88573 7.39210 7.73893 7.98229 8.13484 8.46606 9.57732 10.15691 10.49802 11.51140 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002869 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.943743 B = 9756.475090 C =10226.165768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 C -0.216 4.216 4 C 0.015 3.985 5 C -0.094 4.094 6 C 0.556 3.444 7 O -0.513 6.513 8 N -0.600 5.600 9 C 0.110 3.890 10 C -0.127 4.127 11 C -0.084 4.084 12 H 0.070 0.930 13 C -0.148 4.148 14 C -0.101 4.101 15 H 0.075 0.925 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.120 3.880 27 C -0.125 4.125 28 C -0.145 4.145 29 O 0.100 5.900 30 N -0.365 5.365 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.027 0.973 43 H 0.018 0.982 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.121 0.879 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 -23.187 2.418 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.238 4.238 4 C -0.049 4.049 5 C -0.099 4.099 6 C 0.341 3.659 7 O -0.388 6.388 8 N -0.332 5.332 9 C -0.013 4.013 10 C -0.166 4.166 11 C -0.103 4.103 12 H 0.089 0.911 13 C -0.205 4.205 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.001 4.001 27 C -0.162 4.162 28 C -0.182 4.182 29 O 0.034 5.966 30 N -0.071 5.071 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.085 0.915 48 H 0.139 0.861 49 H 0.126 0.874 50 H 0.132 0.868 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.682 -23.814 2.641 24.875 hybrid contribution -0.150 1.763 -0.128 1.774 sum -6.833 -22.051 2.513 23.222 Atomic orbital electron populations 1.20184 0.85775 1.03862 1.03553 1.23568 0.99081 0.88559 1.02445 1.22366 0.90812 1.01325 1.09278 1.22852 0.95598 0.83588 1.02841 1.19475 0.87570 0.95032 1.07810 1.18877 0.77608 0.87755 0.81629 1.90807 1.46849 1.37082 1.64048 1.48043 1.66089 1.08098 1.11002 1.21755 0.99619 0.87341 0.92608 1.21980 1.00726 0.98178 0.95680 1.21093 1.00322 0.93796 0.95129 0.91120 1.21878 1.00204 1.01906 0.96488 1.21707 1.00453 0.95518 0.94353 0.90680 1.20722 0.96551 0.85662 0.93994 1.42425 1.70768 1.01545 1.23036 1.19236 1.31849 0.83496 1.02602 0.91224 1.24751 1.01352 0.97880 0.96943 1.69686 1.44459 1.30470 1.13120 0.86149 0.77178 0.85271 0.77774 1.20615 1.21897 1.21917 1.21804 0.99993 0.83360 0.94991 1.23223 0.98715 1.03555 0.90717 1.23238 0.94388 0.99811 1.00775 1.84797 1.21821 1.22005 1.67979 1.73849 0.89088 1.23756 1.20361 0.89992 0.90535 0.89865 0.81220 0.91618 0.90295 0.90873 0.91324 0.93238 0.91592 0.92731 0.95487 0.96423 0.78123 0.93551 0.87639 0.91458 0.86101 0.87367 0.86826 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.47 36.01 0.38 -0.17 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.22 -2.35 10.43 -39.38 -0.41 -2.76 16 4 C 0.01 0.16 4.73 -35.30 -0.17 -0.01 16 5 C -0.09 -1.04 1.40 -156.81 -0.22 -1.26 16 6 C 0.56 8.14 6.67 -10.99 -0.07 8.06 16 7 O -0.51 -9.79 15.90 5.56 0.09 -9.70 16 8 N -0.60 -8.10 2.97 -172.77 -0.51 -8.61 16 9 C 0.11 1.16 5.54 -3.71 -0.02 1.14 16 10 C -0.13 -1.28 5.36 -26.61 -0.14 -1.42 16 11 C -0.08 -1.01 2.23 -90.58 -0.20 -1.21 16 12 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 13 C -0.15 -1.69 8.82 37.16 0.33 -1.37 16 14 C -0.10 -1.59 1.92 -90.50 -0.17 -1.76 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 17 N -0.73 -18.59 5.38 -59.91 -0.32 -18.91 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 22 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C 0.12 1.94 5.53 -3.71 -0.02 1.92 16 27 C -0.12 -1.19 9.75 -26.69 -0.26 -1.45 16 28 C -0.14 -1.24 9.62 -26.69 -0.26 -1.49 16 29 O 0.10 1.10 10.97 17.17 0.19 1.29 16 30 N -0.37 -4.26 12.07 33.42 0.40 -3.86 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.77 5.22 -51.93 -0.27 0.50 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.83 6.29 -51.93 -0.33 0.51 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.46 6.90 -40.82 -0.28 10.18 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.11 2.14 6.21 -51.93 -0.32 1.82 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.12 1.28 7.84 -51.93 -0.41 0.87 16 49 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.11 0.77 8.00 -51.93 -0.42 0.36 16 51 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 406.69 15.07 6.13 6.13 Total: -1.00 -33.44 406.69 -8.67 -42.11 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.23 Total: 8.36 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.11 Total: -6.48 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.29 Total: -59.35 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.28 Total: -8.41 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.44 -8.67 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133050134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.171 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds