Wall clock time and date at job start Wed Apr 1 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41379 * 126.80080 * 2 1 4 4 C 1.35447 * 103.98664 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.78025 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.54805 * 330.44253 * 5 4 3 7 7 O 1.21282 * 119.99997 * 124.17010 * 6 5 4 8 8 N 1.34774 * 120.00186 * 304.17421 * 6 5 4 9 9 C 1.46928 * 120.62995 * 354.31992 * 8 6 5 10 10 C 1.53191 * 108.77464 * 233.58633 * 9 8 6 11 11 C 1.53041 * 109.31319 * 305.36495 * 10 9 8 12 12 H 1.09001 * 109.45873 * 181.38389 * 11 10 9 13 13 C 1.52997 * 109.46200 * 301.34447 * 11 10 9 14 14 C 1.53049 * 109.53665 * 61.36655 * 11 10 9 15 15 H 1.08999 * 109.49487 * 58.58387 * 14 11 10 16 16 C 1.53001 * 109.49573 * 178.68297 * 14 11 10 17 17 N 1.46500 * 109.47214 * 184.84127 * 16 14 11 18 18 C 1.36936 * 120.00283 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99775 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99909 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00269 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47016 * 90.00714 * 22 20 18 24 24 H 1.48504 * 109.47115 * 210.00428 * 22 20 18 25 25 H 1.48500 * 109.47164 * 330.00080 * 22 20 18 26 26 C 1.46926 * 120.63153 * 174.29934 * 8 6 5 27 27 C 1.52995 * 117.50171 * 116.11206 * 5 4 3 28 28 C 1.53000 * 117.50077 * 184.77874 * 5 4 3 29 29 O 1.34044 * 106.44410 * 0.24200 * 4 3 2 30 30 N 1.20922 * 111.56484 * 359.56584 * 29 4 3 31 31 H 1.08998 * 109.46927 * 89.99795 * 1 2 3 32 32 H 1.08998 * 109.46860 * 209.99509 * 1 2 3 33 33 H 1.09000 * 109.46747 * 329.99978 * 1 2 3 34 34 H 1.08000 * 128.00669 * 359.96608 * 3 2 1 35 35 H 1.08995 * 109.58411 * 353.37514 * 9 8 6 36 36 H 1.09006 * 109.58354 * 113.65792 * 9 8 6 37 37 H 1.08997 * 109.49920 * 65.31635 * 10 9 8 38 38 H 1.09000 * 109.49494 * 185.38372 * 10 9 8 39 39 H 1.09001 * 109.47433 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47025 * 300.07042 * 13 11 10 41 41 H 1.09000 * 109.47076 * 60.07309 * 13 11 10 42 42 H 1.09005 * 109.46898 * 304.83591 * 16 14 11 43 43 H 1.09003 * 109.47141 * 64.83640 * 16 14 11 44 44 H 0.97005 * 119.99707 * 359.97438 * 17 16 14 45 45 H 0.96998 * 120.00516 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58668 * 6.62238 * 26 8 6 47 47 H 1.08997 * 109.58872 * 246.20492 * 26 8 6 48 48 H 1.09004 * 117.50265 * 215.00077 * 27 5 4 49 49 H 1.08998 * 117.49836 * 0.03223 * 27 5 4 50 50 H 1.08996 * 117.49902 * 359.97003 * 28 5 4 51 51 H 1.08999 * 117.49854 * 144.99690 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9022 1.3696 0.0003 6 6 4.8643 2.7181 -0.6713 7 8 5.2029 3.7096 -0.0604 8 7 4.4539 2.8224 -1.9509 9 6 4.1592 1.6205 -2.7428 10 6 4.9680 1.6759 -4.0426 11 6 4.6747 2.9925 -4.7656 12 1 5.2302 3.0236 -5.7029 13 6 3.1761 3.0906 -5.0580 14 6 5.0997 4.1674 -3.8817 15 1 6.1622 4.0846 -3.6527 16 6 4.8364 5.4822 -4.6187 17 7 5.3488 6.5997 -3.8219 18 6 5.2247 7.8830 -4.2831 19 1 4.7495 8.0714 -5.2345 20 6 5.7097 8.9419 -3.5279 21 7 5.5909 10.1754 -3.9714 22 14 6.5311 8.6162 -1.8820 23 1 7.9886 8.4191 -2.0866 24 1 6.3101 9.7754 -0.9805 25 1 5.9474 7.3953 -1.2705 26 6 4.2924 4.1402 -2.5802 27 6 5.8136 1.2128 1.2191 28 6 6.1960 0.5607 -0.1120 29 8 3.4538 -0.7253 -0.0045 30 7 2.2869 -1.0423 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0710 2.1743 -0.0005 35 1 4.4383 0.7321 -2.1763 36 1 3.0944 1.5870 -2.9737 37 1 6.0317 1.6166 -3.8121 38 1 4.6871 0.8389 -4.6818 39 1 2.9670 4.0280 -5.5733 40 1 2.8732 2.2538 -5.6874 41 1 2.6203 3.0602 -4.1208 42 1 5.3401 5.4641 -5.5852 43 1 3.7640 5.6054 -4.7700 44 1 5.7753 6.4305 -2.9672 45 1 5.9295 10.9154 -3.4435 46 1 4.6594 4.9144 -1.9063 47 1 3.2390 4.3136 -2.7999 48 1 6.3858 2.0851 1.5353 49 1 5.4734 0.5576 2.0210 50 1 6.1072 -0.5232 -0.1851 51 1 7.0197 1.0039 -0.6715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133050135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:57 Heat of formation + Delta-G solvation = 67.608256 kcal Electronic energy + Delta-G solvation = -32351.124851 eV Core-core repulsion = 28255.209785 eV Total energy + Delta-G solvation = -4095.915066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.28686 -40.84401 -38.80626 -36.86083 -35.22280 -35.06214 -33.67447 -31.97624 -31.79684 -30.30892 -29.03759 -27.91633 -26.58237 -25.15230 -24.10219 -23.52860 -22.98490 -22.77462 -21.23244 -20.95114 -19.47596 -18.50625 -18.05178 -17.78739 -17.42712 -16.81513 -16.25055 -15.60306 -15.31482 -15.04206 -14.91911 -14.61236 -14.14418 -13.88855 -13.83598 -13.71117 -13.56251 -13.42672 -13.31451 -13.13823 -12.77411 -12.68689 -12.55396 -12.17422 -11.97439 -11.79257 -11.70940 -11.58520 -11.44201 -11.23352 -11.15614 -11.07415 -10.85055 -10.72679 -10.39205 -10.32152 -10.22152 -10.06005 -9.89997 -9.54744 -9.46933 -8.87548 -8.64510 -7.20547 -5.74299 -3.09976 1.03989 1.87744 2.06989 2.64324 2.88172 3.34369 3.43579 3.50388 3.52177 3.84200 3.85741 4.09385 4.33989 4.41291 4.58537 4.63784 4.66021 4.75219 4.76661 4.88792 5.01744 5.11128 5.12147 5.14557 5.18425 5.21022 5.26069 5.37052 5.41442 5.43224 5.50288 5.51286 5.55228 5.60777 5.64057 5.70209 5.73478 5.77467 5.77889 5.85904 5.95058 6.16475 6.19878 6.23477 6.36863 6.44197 6.64629 6.75534 7.25048 7.91485 7.98519 8.01193 8.44625 9.23692 9.96520 10.15605 11.43944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003282 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.761058 B = 8529.377131 C = 9232.619138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 C -0.216 4.216 4 C 0.014 3.986 5 C -0.094 4.094 6 C 0.557 3.443 7 O -0.519 6.519 8 N -0.599 5.599 9 C 0.108 3.892 10 C -0.128 4.128 11 C -0.084 4.084 12 H 0.077 0.923 13 C -0.154 4.154 14 C -0.106 4.106 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.117 3.883 27 C -0.125 4.125 28 C -0.144 4.144 29 O 0.100 5.900 30 N -0.364 5.364 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.030 0.970 43 H 0.031 0.969 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.109 0.891 50 H 0.114 0.886 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -26.752 6.049 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C -0.238 4.238 4 C -0.050 4.050 5 C -0.099 4.099 6 C 0.342 3.658 7 O -0.395 6.395 8 N -0.331 5.331 9 C -0.014 4.014 10 C -0.166 4.166 11 C -0.103 4.103 12 H 0.095 0.905 13 C -0.211 4.211 14 C -0.125 4.125 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.004 4.004 27 C -0.162 4.162 28 C -0.181 4.181 29 O 0.034 5.966 30 N -0.069 5.069 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.138 0.862 49 H 0.127 0.873 50 H 0.133 0.867 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.912 -27.330 6.227 28.647 hybrid contribution 0.421 0.757 1.074 1.380 sum -5.491 -26.573 7.301 28.100 Atomic orbital electron populations 1.20193 0.85722 1.03898 1.03604 1.23574 0.99108 0.88512 1.02386 1.22359 0.90815 1.01319 1.09267 1.22821 0.95521 0.83657 1.02991 1.19447 0.87687 0.94948 1.07800 1.18905 0.77461 0.87809 0.81589 1.90784 1.47269 1.37225 1.64172 1.48035 1.65945 1.08135 1.10983 1.21802 1.00002 0.87113 0.92526 1.21943 1.00504 0.98273 0.95890 1.21063 0.97133 0.93519 0.98567 0.90491 1.21997 0.95380 1.02189 1.01539 1.21743 1.00216 0.95891 0.94687 0.90753 1.20665 0.97275 0.84698 0.93643 1.42779 1.72246 1.03132 1.22129 1.19031 1.32724 0.81441 1.04232 0.89236 1.24651 1.00946 0.95081 0.98279 1.69701 1.51872 0.97817 1.38870 0.86619 0.79862 0.77418 0.85181 1.21123 1.21694 1.19811 1.21832 1.00544 0.83324 0.94717 1.23221 0.98690 1.03533 0.90766 1.23244 0.94288 0.99899 1.00713 1.84804 1.21849 1.21941 1.67962 1.73854 0.89063 1.23734 1.20280 0.89943 0.90493 0.89853 0.81259 0.90335 0.91149 0.91367 0.90690 0.91544 0.93012 0.92550 0.95189 0.95098 0.80536 0.93077 0.88379 0.90754 0.86197 0.87293 0.86726 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.48 36.01 0.38 -0.13 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.22 -2.20 10.43 -39.38 -0.41 -2.61 16 4 C 0.01 0.14 4.73 -35.31 -0.17 -0.03 16 5 C -0.09 -0.97 1.40 -156.81 -0.22 -1.19 16 6 C 0.56 7.62 6.67 -10.98 -0.07 7.55 16 7 O -0.52 -9.32 15.90 5.56 0.09 -9.23 16 8 N -0.60 -7.50 2.97 -172.77 -0.51 -8.01 16 9 C 0.11 1.05 5.07 -3.71 -0.02 1.03 16 10 C -0.13 -1.17 5.63 -26.61 -0.15 -1.32 16 11 C -0.08 -0.93 2.71 -90.58 -0.25 -1.17 16 12 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.15 -1.59 8.11 37.16 0.30 -1.29 16 14 C -0.11 -1.55 2.15 -90.50 -0.19 -1.74 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.06 5.19 -4.04 -0.02 3.04 16 17 N -0.76 -18.04 5.18 -59.91 -0.31 -18.35 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.77 13.97 55.49 0.78 -28.99 16 22 Si 0.88 22.94 27.74 -169.99 -4.71 18.23 16 23 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.89 6.52 56.52 0.37 -6.52 16 26 C 0.12 1.76 5.06 -3.71 -0.02 1.74 16 27 C -0.12 -1.10 9.75 -26.69 -0.26 -1.36 16 28 C -0.14 -1.12 9.62 -26.69 -0.26 -1.38 16 29 O 0.10 1.05 10.97 17.17 0.19 1.24 16 30 N -0.36 -4.06 12.07 33.42 0.40 -3.66 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.08 0.70 5.22 -51.93 -0.27 0.43 16 36 H 0.07 0.66 6.71 -51.93 -0.35 0.31 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.59 4.98 -51.93 -0.26 0.33 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.57 6.72 -51.93 -0.35 0.23 16 44 H 0.36 8.66 4.75 -40.82 -0.19 8.46 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 46 H 0.10 1.84 6.20 -51.93 -0.32 1.52 16 47 H 0.07 1.07 6.69 -51.93 -0.35 0.72 16 48 H 0.12 1.17 7.84 -51.93 -0.41 0.76 16 49 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.11 0.70 8.00 -51.93 -0.42 0.29 16 51 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -34.39 397.49 -8.22 -42.61 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.92 Total: 6.47 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.21 Total: -6.29 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.35 Total: -59.01 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.28 Total: -7.99 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.39 -8.22 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133050135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.219 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds