Wall clock time and date at job start Wed Apr 1 2020 04:31:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.41379 * 126.80080 * 2 1
4 4 C 1.35447 * 103.98664 * 179.97438 * 3 2 1
5 5 C 1.50695 * 126.78025 * 179.97438 * 4 3 2
6 6 C 1.50705 * 115.54805 * 330.44253 * 5 4 3
7 7 O 1.21282 * 119.99997 * 124.17010 * 6 5 4
8 8 N 1.34774 * 120.00186 * 304.17421 * 6 5 4
9 9 C 1.46928 * 120.62995 * 354.31992 * 8 6 5
10 10 C 1.53191 * 108.77464 * 233.58633 * 9 8 6
11 11 C 1.53041 * 109.31319 * 305.36495 * 10 9 8
12 12 H 1.09001 * 109.45873 * 181.38389 * 11 10 9
13 13 C 1.52997 * 109.46200 * 301.34447 * 11 10 9
14 14 C 1.53049 * 109.53665 * 61.36655 * 11 10 9
15 15 H 1.08999 * 109.49487 * 58.58387 * 14 11 10
16 16 C 1.53001 * 109.49573 * 178.68297 * 14 11 10
17 17 N 1.46500 * 109.47214 * 184.84127 * 16 14 11
18 18 C 1.36936 * 120.00283 * 180.02562 * 17 16 14
19 19 H 1.08001 * 119.99914 * 359.97438 * 18 17 16
20 20 C 1.38807 * 119.99775 * 179.97438 * 18 17 16
21 21 N 1.31621 * 119.99909 * 179.97438 * 20 18 17
22 22 Si 1.86800 * 120.00269 * 359.97438 * 20 18 17
23 23 H 1.48497 * 109.47016 * 90.00714 * 22 20 18
24 24 H 1.48504 * 109.47115 * 210.00428 * 22 20 18
25 25 H 1.48500 * 109.47164 * 330.00080 * 22 20 18
26 26 C 1.46926 * 120.63153 * 174.29934 * 8 6 5
27 27 C 1.52995 * 117.50171 * 116.11206 * 5 4 3
28 28 C 1.53000 * 117.50077 * 184.77874 * 5 4 3
29 29 O 1.34044 * 106.44410 * 0.24200 * 4 3 2
30 30 N 1.20922 * 111.56484 * 359.56584 * 29 4 3
31 31 H 1.08998 * 109.46927 * 89.99795 * 1 2 3
32 32 H 1.08998 * 109.46860 * 209.99509 * 1 2 3
33 33 H 1.09000 * 109.46747 * 329.99978 * 1 2 3
34 34 H 1.08000 * 128.00669 * 359.96608 * 3 2 1
35 35 H 1.08995 * 109.58411 * 353.37514 * 9 8 6
36 36 H 1.09006 * 109.58354 * 113.65792 * 9 8 6
37 37 H 1.08997 * 109.49920 * 65.31635 * 10 9 8
38 38 H 1.09000 * 109.49494 * 185.38372 * 10 9 8
39 39 H 1.09001 * 109.47433 * 180.02562 * 13 11 10
40 40 H 1.08999 * 109.47025 * 300.07042 * 13 11 10
41 41 H 1.09000 * 109.47076 * 60.07309 * 13 11 10
42 42 H 1.09005 * 109.46898 * 304.83591 * 16 14 11
43 43 H 1.09003 * 109.47141 * 64.83640 * 16 14 11
44 44 H 0.97005 * 119.99707 * 359.97438 * 17 16 14
45 45 H 0.96998 * 120.00516 * 179.97438 * 21 20 18
46 46 H 1.09001 * 109.58668 * 6.62238 * 26 8 6
47 47 H 1.08997 * 109.58872 * 246.20492 * 26 8 6
48 48 H 1.09004 * 117.50265 * 215.00077 * 27 5 4
49 49 H 1.08998 * 117.49836 * 0.03223 * 27 5 4
50 50 H 1.08996 * 117.49902 * 359.97003 * 28 5 4
51 51 H 1.08999 * 117.49854 * 144.99690 * 28 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3540 1.1321 0.0000
4 6 3.6025 0.6069 0.0006
5 6 4.9022 1.3696 0.0003
6 6 4.8643 2.7181 -0.6713
7 8 5.2029 3.7096 -0.0604
8 7 4.4539 2.8224 -1.9509
9 6 4.1592 1.6205 -2.7428
10 6 4.9680 1.6759 -4.0426
11 6 4.6747 2.9925 -4.7656
12 1 5.2302 3.0236 -5.7029
13 6 3.1761 3.0906 -5.0580
14 6 5.0997 4.1674 -3.8817
15 1 6.1622 4.0846 -3.6527
16 6 4.8364 5.4822 -4.6187
17 7 5.3488 6.5997 -3.8219
18 6 5.2247 7.8830 -4.2831
19 1 4.7495 8.0714 -5.2345
20 6 5.7097 8.9419 -3.5279
21 7 5.5909 10.1754 -3.9714
22 14 6.5311 8.6162 -1.8820
23 1 7.9886 8.4191 -2.0866
24 1 6.3101 9.7754 -0.9805
25 1 5.9474 7.3953 -1.2705
26 6 4.2924 4.1402 -2.5802
27 6 5.8136 1.2128 1.2191
28 6 6.1960 0.5607 -0.1120
29 8 3.4538 -0.7253 -0.0045
30 7 2.2869 -1.0423 0.0005
31 1 -0.3633 0.0000 -1.0277
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3633 0.8900 0.5138
34 1 2.0710 2.1743 -0.0005
35 1 4.4383 0.7321 -2.1763
36 1 3.0944 1.5870 -2.9737
37 1 6.0317 1.6166 -3.8121
38 1 4.6871 0.8389 -4.6818
39 1 2.9670 4.0280 -5.5733
40 1 2.8732 2.2538 -5.6874
41 1 2.6203 3.0602 -4.1208
42 1 5.3401 5.4641 -5.5852
43 1 3.7640 5.6054 -4.7700
44 1 5.7753 6.4305 -2.9672
45 1 5.9295 10.9154 -3.4435
46 1 4.6594 4.9144 -1.9063
47 1 3.2390 4.3136 -2.7999
48 1 6.3858 2.0851 1.5353
49 1 5.4734 0.5576 2.0210
50 1 6.1072 -0.5232 -0.1851
51 1 7.0197 1.0039 -0.6715
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001133050135.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:56
Heat of formation + Delta-G solvation = 46.351353 kcal
Electronic energy + Delta-G solvation = -32352.046619 eV
Core-core repulsion = 28255.209785 eV
Total energy + Delta-G solvation = -4096.836835 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-46.04833 -41.85248 -39.82558 -37.78219 -36.82051 -35.82563 -34.93800 -33.69404
-32.58232 -31.89599 -29.64106 -28.86884 -27.96013 -26.27539 -24.99368 -24.58847
-24.29624 -23.50263 -22.60230 -21.92800 -20.53371 -19.71416 -19.15209 -18.87552
-18.61066 -17.68878 -17.28715 -16.81130 -16.44694 -16.29295 -15.99381 -15.87364
-15.41381 -15.17352 -14.81949 -14.63118 -14.60472 -14.31096 -14.23784 -14.22067
-13.98085 -13.89291 -13.49347 -13.36417 -13.13837 -12.99207 -12.72149 -12.62585
-12.49708 -12.39754 -12.26203 -12.14346 -12.04903 -11.91869 -11.88247 -11.75762
-11.40685 -11.30990 -11.01867 -11.00566 -10.95035 -10.25556 -9.70433 -9.31127
-8.06667 -5.38500 0.27866 1.11418 1.15266 1.33240 1.36265 1.42778
1.67360 2.01994 2.43130 2.58690 3.10581 3.17967 3.25479 3.27665
3.50032 3.59802 3.71810 3.74881 3.81378 3.94894 3.99663 4.02533
4.19168 4.20561 4.31074 4.43218 4.46027 4.51630 4.55205 4.60942
4.65490 4.66906 4.73184 4.74946 4.77669 4.83714 4.85776 4.87778
4.95562 5.05855 5.06404 5.13078 5.19324 5.20700 5.26045 5.35696
5.42321 5.56425 5.73504 6.18334 6.24294 6.94272 7.04501 7.17044
7.81975 7.98447 9.14996
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012931 B = 0.003282 C = 0.003032
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2164.761058 B = 8529.377131 C = 9232.619138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.025 3.975
3 C -0.228 4.228
4 C 0.021 3.979
5 C -0.106 4.106
6 C 0.554 3.446
7 O -0.572 6.572
8 N -0.593 5.593
9 C 0.107 3.893
10 C -0.121 4.121
11 C -0.078 4.078
12 H 0.084 0.916
13 C -0.152 4.152
14 C -0.094 4.094
15 H 0.063 0.937
16 C 0.162 3.838
17 N -0.761 5.761
18 C -0.229 4.229
19 H 0.063 0.937
20 C -0.057 4.057
21 N -0.981 5.981
22 Si 0.944 3.056
23 H -0.278 1.278
24 H -0.293 1.293
25 H -0.265 1.265
26 C 0.123 3.877
27 C -0.126 4.126
28 C -0.121 4.121
29 O 0.101 5.899
30 N -0.383 5.383
31 H 0.094 0.906
32 H 0.082 0.918
33 H 0.094 0.906
34 H 0.166 0.834
35 H 0.092 0.908
36 H 0.079 0.921
37 H 0.069 0.931
38 H 0.106 0.894
39 H 0.049 0.951
40 H 0.076 0.924
41 H 0.054 0.946
42 H 0.031 0.969
43 H 0.035 0.965
44 H 0.362 0.638
45 H 0.258 0.742
46 H 0.057 0.943
47 H 0.078 0.922
48 H 0.106 0.894
49 H 0.126 0.874
50 H 0.139 0.861
51 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.007 -30.524 6.183 31.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.134 4.134
3 C -0.249 4.249
4 C -0.043 4.043
5 C -0.110 4.110
6 C 0.341 3.659
7 O -0.451 6.451
8 N -0.324 5.324
9 C -0.015 4.015
10 C -0.159 4.159
11 C -0.097 4.097
12 H 0.102 0.898
13 C -0.209 4.209
14 C -0.113 4.113
15 H 0.082 0.918
16 C 0.035 3.965
17 N -0.407 5.407
18 C -0.360 4.360
19 H 0.081 0.919
20 C -0.248 4.248
21 N -0.632 5.632
22 Si 0.772 3.228
23 H -0.204 1.204
24 H -0.220 1.220
25 H -0.190 1.190
26 C 0.000 4.000
27 C -0.163 4.163
28 C -0.158 4.158
29 O 0.037 5.963
30 N -0.089 5.089
31 H 0.113 0.887
32 H 0.101 0.899
33 H 0.112 0.888
34 H 0.183 0.817
35 H 0.110 0.890
36 H 0.098 0.902
37 H 0.087 0.913
38 H 0.124 0.876
39 H 0.068 0.932
40 H 0.095 0.905
41 H 0.073 0.927
42 H 0.049 0.951
43 H 0.052 0.948
44 H 0.195 0.805
45 H 0.067 0.933
46 H 0.076 0.924
47 H 0.097 0.903
48 H 0.124 0.876
49 H 0.144 0.856
50 H 0.157 0.843
51 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -6.140 -31.184 6.330 32.407
hybrid contribution 0.414 1.910 0.944 2.170
sum -5.726 -29.274 7.274 30.703
Atomic orbital electron populations
1.20340 0.83815 1.04744 1.04651 1.23987 1.00345 0.87866 1.01157
1.22423 0.91244 1.01365 1.09888 1.22718 0.95253 0.83715 1.02628
1.19227 0.88968 0.93732 1.09097 1.19436 0.76342 0.88543 0.81555
1.90755 1.49670 1.39300 1.65353 1.48056 1.65197 1.08086 1.11015
1.22025 1.00772 0.86059 0.92607 1.21935 1.00528 0.97853 0.95573
1.21052 0.97723 0.92793 0.98181 0.89756 1.21973 0.94677 1.02428
1.01774 1.21606 0.99575 0.95315 0.94829 0.91819 1.20865 0.97018
0.85080 0.93492 1.42860 1.72365 1.02842 1.22619 1.19064 1.30611
0.83466 1.02875 0.91856 1.25348 1.02640 0.94925 1.01931 1.69850
1.53972 0.98794 1.40539 0.85576 0.79032 0.77205 0.80961 1.20405
1.21951 1.19038 1.21550 1.00499 0.83884 0.94032 1.23298 0.98026
1.03535 0.91474 1.23408 0.92283 1.00855 0.99220 1.84789 1.21740
1.21682 1.68098 1.73848 0.89383 1.24270 1.21441 0.88705 0.89906
0.88769 0.81674 0.88996 0.90248 0.91250 0.87615 0.93168 0.90509
0.92680 0.95104 0.94751 0.80535 0.93287 0.92439 0.90347 0.87605
0.85593 0.84286 0.86711
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.87 10.48 71.24 0.75 -0.12 16
2 C 0.02 0.43 7.33 43.58 0.32 0.75 16
3 C -0.23 -4.29 10.43 22.40 0.23 -4.06 16
4 C 0.02 0.38 4.73 25.04 0.12 0.49 16
5 C -0.11 -2.00 1.40 -53.68 -0.08 -2.08 16
6 C 0.55 14.89 6.67 87.66 0.58 15.47 16
7 O -0.57 -21.04 15.90 -3.03 -0.05 -21.09 16
8 N -0.59 -14.18 2.97 -818.91 -2.43 -16.61 16
9 C 0.11 1.75 5.07 86.36 0.44 2.19 16
10 C -0.12 -1.76 5.63 30.67 0.17 -1.59 16
11 C -0.08 -1.53 2.71 -10.76 -0.03 -1.56 16
12 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
13 C -0.15 -2.73 8.11 71.98 0.58 -2.15 16
14 C -0.09 -2.66 2.15 -10.72 -0.02 -2.68 16
15 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
16 C 0.16 5.98 5.19 86.38 0.45 6.43 16
17 N -0.76 -36.71 5.18 -343.45 -1.78 -38.49 16
18 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16
19 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16
20 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16
21 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16
22 Si 0.94 48.62 27.74 68.60 1.90 50.52 16
23 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16
24 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16
25 H -0.27 -13.19 6.52 99.48 0.65 -12.54 16
26 C 0.12 3.67 5.06 86.36 0.44 4.11 16
27 C -0.13 -2.02 9.75 30.62 0.30 -1.72 16
28 C -0.12 -1.54 9.62 30.62 0.29 -1.25 16
29 O 0.10 1.87 10.97 71.60 0.79 2.65 16
30 N -0.38 -7.66 12.07 -49.56 -0.60 -8.26 16
31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
34 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16
35 H 0.09 1.32 5.22 -2.39 -0.01 1.31 16
36 H 0.08 1.22 6.71 -2.38 -0.02 1.20 16
37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
39 H 0.05 1.07 6.57 -2.39 -0.02 1.06 16
40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
41 H 0.05 1.01 4.98 -2.39 -0.01 1.00 16
42 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16
43 H 0.03 1.27 6.72 -2.39 -0.02 1.26 16
44 H 0.36 17.46 4.75 -92.70 -0.44 17.02 16
45 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16
46 H 0.06 2.22 6.20 -2.39 -0.01 2.20 16
47 H 0.08 2.24 6.69 -2.39 -0.02 2.23 16
48 H 0.11 2.03 7.84 -2.39 -0.02 2.01 16
49 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16
50 H 0.14 1.14 8.00 -2.39 -0.02 1.12 16
51 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16
Total: -1.00 -77.03 397.49 4.48 -72.55
By element:
Atomic # 1 Polarization: 25.37 SS G_CDS: 0.45 Total: 25.82 kcal
Atomic # 6 Polarization: -9.11 SS G_CDS: 5.89 Total: -3.22 kcal
Atomic # 7 Polarization: -122.73 SS G_CDS: -4.51 Total: -127.24 kcal
Atomic # 8 Polarization: -19.17 SS G_CDS: 0.74 Total: -18.43 kcal
Atomic # 14 Polarization: 48.62 SS G_CDS: 1.90 Total: 50.52 kcal
Total: -77.03 4.48 -72.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133050135.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.905 kcal
(2) G-P(sol) polarization free energy of solvation -77.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds