Wall clock time and date at job start Wed Apr 1 2020 04:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41379 * 126.80080 * 2 1 4 4 C 1.35447 * 103.98664 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.78025 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.54805 * 330.44253 * 5 4 3 7 7 O 1.21282 * 119.99997 * 124.17010 * 6 5 4 8 8 N 1.34774 * 120.00186 * 304.17421 * 6 5 4 9 9 C 1.46928 * 120.62995 * 354.31992 * 8 6 5 10 10 C 1.53191 * 108.77464 * 233.58633 * 9 8 6 11 11 C 1.53041 * 109.31319 * 305.36495 * 10 9 8 12 12 H 1.09001 * 109.45873 * 181.38389 * 11 10 9 13 13 C 1.52997 * 109.46200 * 301.34447 * 11 10 9 14 14 C 1.53049 * 109.53665 * 61.36655 * 11 10 9 15 15 H 1.08999 * 109.49487 * 58.58387 * 14 11 10 16 16 C 1.53001 * 109.49573 * 178.68297 * 14 11 10 17 17 N 1.46500 * 109.47214 * 184.84127 * 16 14 11 18 18 C 1.36936 * 120.00283 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99775 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99909 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00269 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47016 * 90.00714 * 22 20 18 24 24 H 1.48504 * 109.47115 * 210.00428 * 22 20 18 25 25 H 1.48500 * 109.47164 * 330.00080 * 22 20 18 26 26 C 1.46926 * 120.63153 * 174.29934 * 8 6 5 27 27 C 1.52995 * 117.50171 * 116.11206 * 5 4 3 28 28 C 1.53000 * 117.50077 * 184.77874 * 5 4 3 29 29 O 1.34044 * 106.44410 * 0.24200 * 4 3 2 30 30 N 1.20922 * 111.56484 * 359.56584 * 29 4 3 31 31 H 1.08998 * 109.46927 * 89.99795 * 1 2 3 32 32 H 1.08998 * 109.46860 * 209.99509 * 1 2 3 33 33 H 1.09000 * 109.46747 * 329.99978 * 1 2 3 34 34 H 1.08000 * 128.00669 * 359.96608 * 3 2 1 35 35 H 1.08995 * 109.58411 * 353.37514 * 9 8 6 36 36 H 1.09006 * 109.58354 * 113.65792 * 9 8 6 37 37 H 1.08997 * 109.49920 * 65.31635 * 10 9 8 38 38 H 1.09000 * 109.49494 * 185.38372 * 10 9 8 39 39 H 1.09001 * 109.47433 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47025 * 300.07042 * 13 11 10 41 41 H 1.09000 * 109.47076 * 60.07309 * 13 11 10 42 42 H 1.09005 * 109.46898 * 304.83591 * 16 14 11 43 43 H 1.09003 * 109.47141 * 64.83640 * 16 14 11 44 44 H 0.97005 * 119.99707 * 359.97438 * 17 16 14 45 45 H 0.96998 * 120.00516 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.58668 * 6.62238 * 26 8 6 47 47 H 1.08997 * 109.58872 * 246.20492 * 26 8 6 48 48 H 1.09004 * 117.50265 * 215.00077 * 27 5 4 49 49 H 1.08998 * 117.49836 * 0.03223 * 27 5 4 50 50 H 1.08996 * 117.49902 * 359.97003 * 28 5 4 51 51 H 1.08999 * 117.49854 * 144.99690 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9022 1.3696 0.0003 6 6 4.8643 2.7181 -0.6713 7 8 5.2029 3.7096 -0.0604 8 7 4.4539 2.8224 -1.9509 9 6 4.1592 1.6205 -2.7428 10 6 4.9680 1.6759 -4.0426 11 6 4.6747 2.9925 -4.7656 12 1 5.2302 3.0236 -5.7029 13 6 3.1761 3.0906 -5.0580 14 6 5.0997 4.1674 -3.8817 15 1 6.1622 4.0846 -3.6527 16 6 4.8364 5.4822 -4.6187 17 7 5.3488 6.5997 -3.8219 18 6 5.2247 7.8830 -4.2831 19 1 4.7495 8.0714 -5.2345 20 6 5.7097 8.9419 -3.5279 21 7 5.5909 10.1754 -3.9714 22 14 6.5311 8.6162 -1.8820 23 1 7.9886 8.4191 -2.0866 24 1 6.3101 9.7754 -0.9805 25 1 5.9474 7.3953 -1.2705 26 6 4.2924 4.1402 -2.5802 27 6 5.8136 1.2128 1.2191 28 6 6.1960 0.5607 -0.1120 29 8 3.4538 -0.7253 -0.0045 30 7 2.2869 -1.0423 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0710 2.1743 -0.0005 35 1 4.4383 0.7321 -2.1763 36 1 3.0944 1.5870 -2.9737 37 1 6.0317 1.6166 -3.8121 38 1 4.6871 0.8389 -4.6818 39 1 2.9670 4.0280 -5.5733 40 1 2.8732 2.2538 -5.6874 41 1 2.6203 3.0602 -4.1208 42 1 5.3401 5.4641 -5.5852 43 1 3.7640 5.6054 -4.7700 44 1 5.7753 6.4305 -2.9672 45 1 5.9295 10.9154 -3.4435 46 1 4.6594 4.9144 -1.9063 47 1 3.2390 4.3136 -2.7999 48 1 6.3858 2.0851 1.5353 49 1 5.4734 0.5576 2.0210 50 1 6.1072 -0.5232 -0.1851 51 1 7.0197 1.0039 -0.6715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133050135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:56 Heat of formation + Delta-G solvation = 46.351353 kcal Electronic energy + Delta-G solvation = -32352.046619 eV Core-core repulsion = 28255.209785 eV Total energy + Delta-G solvation = -4096.836835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.04833 -41.85248 -39.82558 -37.78219 -36.82051 -35.82563 -34.93800 -33.69404 -32.58232 -31.89599 -29.64106 -28.86884 -27.96013 -26.27539 -24.99368 -24.58847 -24.29624 -23.50263 -22.60230 -21.92800 -20.53371 -19.71416 -19.15209 -18.87552 -18.61066 -17.68878 -17.28715 -16.81130 -16.44694 -16.29295 -15.99381 -15.87364 -15.41381 -15.17352 -14.81949 -14.63118 -14.60472 -14.31096 -14.23784 -14.22067 -13.98085 -13.89291 -13.49347 -13.36417 -13.13837 -12.99207 -12.72149 -12.62585 -12.49708 -12.39754 -12.26203 -12.14346 -12.04903 -11.91869 -11.88247 -11.75762 -11.40685 -11.30990 -11.01867 -11.00566 -10.95035 -10.25556 -9.70433 -9.31127 -8.06667 -5.38500 0.27866 1.11418 1.15266 1.33240 1.36265 1.42778 1.67360 2.01994 2.43130 2.58690 3.10581 3.17967 3.25479 3.27665 3.50032 3.59802 3.71810 3.74881 3.81378 3.94894 3.99663 4.02533 4.19168 4.20561 4.31074 4.43218 4.46027 4.51630 4.55205 4.60942 4.65490 4.66906 4.73184 4.74946 4.77669 4.83714 4.85776 4.87778 4.95562 5.05855 5.06404 5.13078 5.19324 5.20700 5.26045 5.35696 5.42321 5.56425 5.73504 6.18334 6.24294 6.94272 7.04501 7.17044 7.81975 7.98447 9.14996 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003282 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.761058 B = 8529.377131 C = 9232.619138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 C -0.228 4.228 4 C 0.021 3.979 5 C -0.106 4.106 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.593 5.593 9 C 0.107 3.893 10 C -0.121 4.121 11 C -0.078 4.078 12 H 0.084 0.916 13 C -0.152 4.152 14 C -0.094 4.094 15 H 0.063 0.937 16 C 0.162 3.838 17 N -0.761 5.761 18 C -0.229 4.229 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.981 5.981 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.265 1.265 26 C 0.123 3.877 27 C -0.126 4.126 28 C -0.121 4.121 29 O 0.101 5.899 30 N -0.383 5.383 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.035 0.965 44 H 0.362 0.638 45 H 0.258 0.742 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.126 0.874 50 H 0.139 0.861 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -30.524 6.183 31.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C -0.249 4.249 4 C -0.043 4.043 5 C -0.110 4.110 6 C 0.341 3.659 7 O -0.451 6.451 8 N -0.324 5.324 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.097 4.097 12 H 0.102 0.898 13 C -0.209 4.209 14 C -0.113 4.113 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.407 5.407 18 C -0.360 4.360 19 H 0.081 0.919 20 C -0.248 4.248 21 N -0.632 5.632 22 Si 0.772 3.228 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.190 1.190 26 C 0.000 4.000 27 C -0.163 4.163 28 C -0.158 4.158 29 O 0.037 5.963 30 N -0.089 5.089 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.195 0.805 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.124 0.876 49 H 0.144 0.856 50 H 0.157 0.843 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.140 -31.184 6.330 32.407 hybrid contribution 0.414 1.910 0.944 2.170 sum -5.726 -29.274 7.274 30.703 Atomic orbital electron populations 1.20340 0.83815 1.04744 1.04651 1.23987 1.00345 0.87866 1.01157 1.22423 0.91244 1.01365 1.09888 1.22718 0.95253 0.83715 1.02628 1.19227 0.88968 0.93732 1.09097 1.19436 0.76342 0.88543 0.81555 1.90755 1.49670 1.39300 1.65353 1.48056 1.65197 1.08086 1.11015 1.22025 1.00772 0.86059 0.92607 1.21935 1.00528 0.97853 0.95573 1.21052 0.97723 0.92793 0.98181 0.89756 1.21973 0.94677 1.02428 1.01774 1.21606 0.99575 0.95315 0.94829 0.91819 1.20865 0.97018 0.85080 0.93492 1.42860 1.72365 1.02842 1.22619 1.19064 1.30611 0.83466 1.02875 0.91856 1.25348 1.02640 0.94925 1.01931 1.69850 1.53972 0.98794 1.40539 0.85576 0.79032 0.77205 0.80961 1.20405 1.21951 1.19038 1.21550 1.00499 0.83884 0.94032 1.23298 0.98026 1.03535 0.91474 1.23408 0.92283 1.00855 0.99220 1.84789 1.21740 1.21682 1.68098 1.73848 0.89383 1.24270 1.21441 0.88705 0.89906 0.88769 0.81674 0.88996 0.90248 0.91250 0.87615 0.93168 0.90509 0.92680 0.95104 0.94751 0.80535 0.93287 0.92439 0.90347 0.87605 0.85593 0.84286 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.48 71.24 0.75 -0.12 16 2 C 0.02 0.43 7.33 43.58 0.32 0.75 16 3 C -0.23 -4.29 10.43 22.40 0.23 -4.06 16 4 C 0.02 0.38 4.73 25.04 0.12 0.49 16 5 C -0.11 -2.00 1.40 -53.68 -0.08 -2.08 16 6 C 0.55 14.89 6.67 87.66 0.58 15.47 16 7 O -0.57 -21.04 15.90 -3.03 -0.05 -21.09 16 8 N -0.59 -14.18 2.97 -818.91 -2.43 -16.61 16 9 C 0.11 1.75 5.07 86.36 0.44 2.19 16 10 C -0.12 -1.76 5.63 30.67 0.17 -1.59 16 11 C -0.08 -1.53 2.71 -10.76 -0.03 -1.56 16 12 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.15 -2.73 8.11 71.98 0.58 -2.15 16 14 C -0.09 -2.66 2.15 -10.72 -0.02 -2.68 16 15 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 16 C 0.16 5.98 5.19 86.38 0.45 6.43 16 17 N -0.76 -36.71 5.18 -343.45 -1.78 -38.49 16 18 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 19 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 21 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 22 Si 0.94 48.62 27.74 68.60 1.90 50.52 16 23 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 25 H -0.27 -13.19 6.52 99.48 0.65 -12.54 16 26 C 0.12 3.67 5.06 86.36 0.44 4.11 16 27 C -0.13 -2.02 9.75 30.62 0.30 -1.72 16 28 C -0.12 -1.54 9.62 30.62 0.29 -1.25 16 29 O 0.10 1.87 10.97 71.60 0.79 2.65 16 30 N -0.38 -7.66 12.07 -49.56 -0.60 -8.26 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.09 1.32 5.22 -2.39 -0.01 1.31 16 36 H 0.08 1.22 6.71 -2.38 -0.02 1.20 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.07 6.57 -2.39 -0.02 1.06 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.01 4.98 -2.39 -0.01 1.00 16 42 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.03 1.27 6.72 -2.39 -0.02 1.26 16 44 H 0.36 17.46 4.75 -92.70 -0.44 17.02 16 45 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.06 2.22 6.20 -2.39 -0.01 2.20 16 47 H 0.08 2.24 6.69 -2.39 -0.02 2.23 16 48 H 0.11 2.03 7.84 -2.39 -0.02 2.01 16 49 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 50 H 0.14 1.14 8.00 -2.39 -0.02 1.12 16 51 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -77.03 397.49 4.48 -72.55 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.45 Total: 25.82 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.89 Total: -3.22 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -4.51 Total: -127.24 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.74 Total: -18.43 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.90 Total: 50.52 kcal Total: -77.03 4.48 -72.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133050135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.905 kcal (2) G-P(sol) polarization free energy of solvation -77.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds