Wall clock time and date at job start Wed Apr 1 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34252 * 126.52469 * 2 1 4 4 C 1.34051 * 108.22490 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.37814 * 179.97438 * 4 3 2 6 6 C 1.53001 * 117.49619 * 60.02281 * 5 4 3 7 7 C 1.52992 * 117.49780 * 351.40118 * 5 4 3 8 8 N 1.29934 * 109.24402 * 0.22477 * 4 3 2 9 9 C 1.36066 * 108.47381 * 359.64318 * 8 4 3 10 10 C 1.47422 * 126.44604 * 180.11192 * 9 8 4 11 11 O 1.21610 * 119.99897 * 186.72187 * 10 9 8 12 12 N 1.34787 * 120.00023 * 6.71843 * 10 9 8 13 13 C 1.46920 * 120.62720 * 6.87397 * 12 10 9 14 14 C 1.53631 * 108.54223 * 126.36954 * 13 12 10 15 15 C 1.53045 * 109.23995 * 54.85099 * 14 13 12 16 16 H 1.09002 * 109.45500 * 58.53677 * 15 14 13 17 17 C 1.53001 * 109.44812 * 178.49848 * 15 14 13 18 18 C 1.53043 * 109.54045 * 298.51664 * 15 14 13 19 19 H 1.09007 * 109.49107 * 301.41193 * 18 15 14 20 20 C 1.52995 * 109.52155 * 181.33602 * 18 15 14 21 21 N 1.46501 * 109.46933 * 175.14434 * 20 18 15 22 22 C 1.36934 * 119.99982 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00510 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99737 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00233 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99518 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47205 * 60.00207 * 26 24 22 28 28 H 1.48506 * 109.46624 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47389 * 299.99661 * 26 24 22 30 30 C 1.46926 * 120.62922 * 187.15598 * 12 10 9 31 31 H 1.09002 * 109.46651 * 359.96721 * 1 2 3 32 32 H 1.08996 * 109.47112 * 119.97378 * 1 2 3 33 33 H 1.08997 * 109.46882 * 239.97611 * 1 2 3 34 34 H 1.09001 * 115.56094 * 205.70937 * 5 4 3 35 35 H 1.09003 * 117.49428 * 145.02082 * 6 5 4 36 36 H 1.09000 * 117.50032 * 0.02562 * 6 5 4 37 37 H 1.09003 * 117.50103 * 0.02562 * 7 5 4 38 38 H 1.09002 * 117.49826 * 214.97721 * 7 5 4 39 39 H 1.08996 * 109.58715 * 246.19902 * 13 12 10 40 40 H 1.08998 * 109.58886 * 6.62733 * 13 12 10 41 41 H 1.08998 * 109.63250 * 294.86523 * 14 13 12 42 42 H 1.09000 * 109.45691 * 174.73811 * 14 13 12 43 43 H 1.08997 * 109.47202 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.46795 * 300.06427 * 17 15 14 45 45 H 1.09000 * 109.46693 * 60.06042 * 17 15 14 46 46 H 1.09007 * 109.47008 * 295.13885 * 20 18 15 47 47 H 1.08996 * 109.47437 * 55.14104 * 20 18 15 48 48 H 0.97004 * 120.00013 * 359.97438 * 21 20 18 49 49 H 0.97003 * 119.99869 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58634 * 353.36887 * 30 12 10 51 51 H 1.08997 * 109.58919 * 113.79597 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7930 1.5506 -0.0013 6 6 4.9611 2.5156 1.1741 7 6 4.5673 3.0501 -0.2043 8 7 3.6002 -0.6412 -0.0057 9 6 2.3169 -1.0936 -0.0006 10 6 1.8853 -2.5032 -0.0015 11 8 0.7065 -2.7781 -0.1198 12 7 2.7970 -3.4873 0.1288 13 6 4.2017 -3.1723 0.4224 14 6 4.6317 -3.9683 1.6640 15 6 4.3571 -5.4556 1.4296 16 1 4.9023 -5.7907 0.5472 17 6 4.8183 -6.2571 2.6485 18 6 2.8573 -5.6716 1.2149 19 1 2.3098 -5.3137 2.0869 20 6 2.5791 -7.1625 1.0137 21 7 1.1334 -7.3818 0.9241 22 6 0.6428 -8.6471 0.7420 23 1 1.3216 -9.4835 0.6639 24 6 -0.7272 -8.8549 0.6576 25 7 -1.5545 -7.8358 0.7532 26 14 -1.3964 -10.5811 0.4084 27 1 -0.9715 -11.4447 1.5393 28 1 -2.8796 -10.5336 0.3526 29 1 -0.8702 -11.1371 -0.8641 30 6 2.4062 -4.8952 -0.0262 31 1 -0.3633 1.0277 0.0006 32 1 -0.3633 -0.5134 -0.8902 33 1 -0.3633 -0.5142 0.8898 34 1 5.6965 1.1153 -0.4283 35 1 5.9752 2.7151 1.5203 36 1 4.1937 2.5045 1.9481 37 1 3.5405 3.3911 -0.3370 38 1 5.3223 3.6014 -0.7649 39 1 4.8241 -3.4515 -0.4277 40 1 4.3036 -2.1048 0.6176 41 1 4.0675 -3.6266 2.5317 42 1 5.6968 -3.8183 1.8404 43 1 4.6233 -7.3164 2.4818 44 1 5.8865 -6.1033 2.8015 45 1 4.2730 -5.9222 3.5309 46 1 3.0555 -7.5000 0.0932 47 1 2.9802 -7.7241 1.8574 48 1 0.5237 -6.6305 0.9938 49 1 -2.5118 -7.9811 0.6946 50 1 1.3231 -4.9647 -0.1269 51 1 2.8851 -5.3120 -0.9121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133205319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:42 Heat of formation + Delta-G solvation = 28.282435 kcal Electronic energy + Delta-G solvation = -31303.834076 eV Core-core repulsion = 27206.213715 eV Total energy + Delta-G solvation = -4097.620362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71725 -39.95729 -37.92706 -37.61261 -35.35805 -34.62522 -33.55161 -32.44030 -31.73588 -29.71006 -28.54611 -27.52452 -25.67811 -24.56385 -23.34090 -23.04965 -22.99226 -22.47335 -21.36526 -21.10469 -19.69147 -18.97847 -17.43726 -17.26782 -16.95529 -16.71879 -15.79642 -15.66323 -15.00970 -14.89909 -14.76107 -14.30878 -14.00718 -13.83159 -13.66693 -13.43112 -13.33046 -13.07600 -13.00214 -12.89750 -12.64095 -12.47448 -12.43546 -12.12112 -11.93085 -11.74464 -11.61533 -11.45783 -11.13813 -11.10872 -10.93901 -10.89477 -10.70489 -10.63522 -10.37991 -10.13666 -10.05255 -9.96061 -9.58948 -9.42893 -8.91498 -8.77646 -8.31643 -6.81368 -5.65558 -2.94758 0.92553 1.73717 2.15540 3.05917 3.18540 3.40061 3.49583 3.50266 3.53972 3.55579 4.17046 4.32287 4.39472 4.47018 4.65847 4.69017 4.91078 4.95620 5.05466 5.06069 5.08421 5.19445 5.27135 5.33281 5.38264 5.46743 5.49474 5.52965 5.55287 5.65816 5.67121 5.75193 5.79952 5.83494 5.88064 5.92671 6.06317 6.09753 6.15042 6.26771 6.31450 6.36495 6.42793 6.56244 6.65789 6.81920 6.90684 6.99334 7.25605 7.63249 7.77926 8.30944 8.52387 9.63140 10.22157 10.56595 11.56780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002594 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.850948 B =10790.017550 C =12300.909442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.040 3.960 3 O -0.196 6.196 4 C 0.218 3.782 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.163 4.163 8 N -0.447 5.447 9 C -0.066 4.066 10 C 0.594 3.406 11 O -0.525 6.525 12 N -0.592 5.592 13 C 0.080 3.920 14 C -0.126 4.126 15 C -0.086 4.086 16 H 0.070 0.930 17 C -0.147 4.147 18 C -0.100 4.100 19 H 0.073 0.927 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 C 0.120 3.880 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.018 0.982 47 H 0.027 0.973 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.104 0.896 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.337 24.230 0.005 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.016 4.016 3 O -0.083 6.083 4 C 0.011 3.989 5 C -0.090 4.090 6 C -0.196 4.196 7 C -0.201 4.201 8 N -0.177 5.177 9 C -0.186 4.186 10 C 0.381 3.619 11 O -0.401 6.401 12 N -0.324 5.324 13 C -0.043 4.043 14 C -0.164 4.164 15 C -0.105 4.105 16 H 0.088 0.912 17 C -0.204 4.204 18 C -0.119 4.119 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.001 4.001 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.122 0.878 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.206 23.531 -0.100 28.572 hybrid contribution -1.014 -0.506 -0.134 1.142 sum 15.191 23.025 -0.235 27.586 Atomic orbital electron populations 1.20496 0.82196 1.03729 1.06039 1.23746 0.95114 0.83044 0.99666 1.84268 1.17747 1.36343 1.69961 1.25098 0.83151 0.89840 1.00849 1.20272 0.92282 0.89513 1.06977 1.23151 1.04110 1.00572 0.91735 1.23120 1.04101 0.93122 0.99714 1.70522 1.21292 1.07909 1.17994 1.21604 0.88397 0.95820 1.12771 1.16785 0.85362 0.82356 0.77418 1.90871 1.16093 1.82699 1.50450 1.47917 1.09148 1.06487 1.68837 1.22671 0.80621 1.04104 0.96861 1.22051 1.00909 0.95314 0.98142 1.21118 0.95998 0.94594 0.98763 0.91203 1.21880 0.99963 1.00896 0.97690 1.21691 0.94974 0.97131 0.98148 0.90847 1.20724 0.87301 0.91023 0.97877 1.42417 1.00170 1.07228 1.87921 1.19160 0.90513 0.85681 1.41771 0.91336 1.24750 0.96051 0.97147 1.03049 1.69665 1.02156 1.28940 1.57094 0.86291 0.77817 0.84292 0.77901 1.21376 1.21746 1.21337 1.21780 1.03204 0.77728 0.97426 0.90414 0.87835 0.88063 0.83422 0.87011 0.88102 0.87812 0.87132 0.92108 0.85040 0.91954 0.91168 0.91721 0.93300 0.92877 0.96424 0.95537 0.78101 0.93496 0.87792 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 9.16 36.01 0.33 -0.38 16 2 C 0.04 0.51 7.44 -35.08 -0.26 0.25 16 3 O -0.20 -2.20 10.40 6.52 0.07 -2.14 16 4 C 0.22 2.32 7.80 -13.08 -0.10 2.22 16 5 C -0.07 -0.47 6.33 -91.77 -0.58 -1.05 16 6 C -0.16 -0.77 10.23 -26.73 -0.27 -1.04 16 7 C -0.16 -0.77 10.16 -26.74 -0.27 -1.04 16 8 N -0.45 -5.75 7.82 -7.65 -0.06 -5.81 16 9 C -0.07 -0.97 6.67 -83.02 -0.55 -1.53 16 10 C 0.59 10.38 7.67 -12.52 -0.10 10.28 16 11 O -0.52 -10.67 15.05 5.27 0.08 -10.60 16 12 N -0.59 -9.71 2.97 -173.77 -0.52 -10.23 16 13 C 0.08 1.07 6.14 -3.49 -0.02 1.04 16 14 C -0.13 -1.55 5.38 -26.38 -0.14 -1.70 16 15 C -0.09 -1.18 2.23 -90.57 -0.20 -1.38 16 16 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 17 C -0.15 -1.90 8.82 37.16 0.33 -1.57 16 18 C -0.10 -1.75 1.92 -90.50 -0.17 -1.92 16 19 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 20 C 0.16 3.31 5.41 -4.04 -0.02 3.29 16 21 N -0.73 -19.36 5.38 -59.91 -0.32 -19.68 16 22 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -29.33 13.06 55.49 0.72 -28.61 16 26 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 C 0.12 2.19 5.53 -3.71 -0.02 2.17 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.14 7.99 -51.93 -0.42 0.73 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.56 7.94 -51.93 -0.41 0.14 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.13 1.72 4.10 -61.02 -0.25 1.47 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.89 6.30 -51.93 -0.33 0.57 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.03 0.55 6.15 -51.93 -0.32 0.24 16 48 H 0.38 10.89 6.89 -40.82 -0.28 10.61 16 49 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 50 H 0.10 2.28 6.20 -51.93 -0.32 1.96 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -34.56 405.73 -9.46 -44.01 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.21 Total: 8.80 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.31 Total: 0.01 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.17 Total: -64.32 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.15 Total: -12.73 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.56 -9.46 -44.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.297 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds