Wall clock time and date at job start Wed Apr 1 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34252 * 126.52469 * 2 1 4 4 C 1.34051 * 108.22490 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.37814 * 179.97438 * 4 3 2 6 6 C 1.53001 * 117.49619 * 60.02281 * 5 4 3 7 7 C 1.52992 * 117.49780 * 351.40118 * 5 4 3 8 8 N 1.29934 * 109.24402 * 0.22477 * 4 3 2 9 9 C 1.36066 * 108.47381 * 359.64318 * 8 4 3 10 10 C 1.47422 * 126.44604 * 180.11192 * 9 8 4 11 11 O 1.21610 * 119.99897 * 186.72187 * 10 9 8 12 12 N 1.34787 * 120.00023 * 6.71843 * 10 9 8 13 13 C 1.46920 * 120.62720 * 6.87397 * 12 10 9 14 14 C 1.53631 * 108.54223 * 126.36954 * 13 12 10 15 15 C 1.53045 * 109.23995 * 54.85099 * 14 13 12 16 16 H 1.09002 * 109.45500 * 58.53677 * 15 14 13 17 17 C 1.53001 * 109.44812 * 178.49848 * 15 14 13 18 18 C 1.53043 * 109.54045 * 298.51664 * 15 14 13 19 19 H 1.09007 * 109.49107 * 301.41193 * 18 15 14 20 20 C 1.52995 * 109.52155 * 181.33602 * 18 15 14 21 21 N 1.46501 * 109.46933 * 175.14434 * 20 18 15 22 22 C 1.36934 * 119.99982 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00510 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99737 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00233 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99518 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47205 * 60.00207 * 26 24 22 28 28 H 1.48506 * 109.46624 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47389 * 299.99661 * 26 24 22 30 30 C 1.46926 * 120.62922 * 187.15598 * 12 10 9 31 31 H 1.09002 * 109.46651 * 359.96721 * 1 2 3 32 32 H 1.08996 * 109.47112 * 119.97378 * 1 2 3 33 33 H 1.08997 * 109.46882 * 239.97611 * 1 2 3 34 34 H 1.09001 * 115.56094 * 205.70937 * 5 4 3 35 35 H 1.09003 * 117.49428 * 145.02082 * 6 5 4 36 36 H 1.09000 * 117.50032 * 0.02562 * 6 5 4 37 37 H 1.09003 * 117.50103 * 0.02562 * 7 5 4 38 38 H 1.09002 * 117.49826 * 214.97721 * 7 5 4 39 39 H 1.08996 * 109.58715 * 246.19902 * 13 12 10 40 40 H 1.08998 * 109.58886 * 6.62733 * 13 12 10 41 41 H 1.08998 * 109.63250 * 294.86523 * 14 13 12 42 42 H 1.09000 * 109.45691 * 174.73811 * 14 13 12 43 43 H 1.08997 * 109.47202 * 180.02562 * 17 15 14 44 44 H 1.09005 * 109.46795 * 300.06427 * 17 15 14 45 45 H 1.09000 * 109.46693 * 60.06042 * 17 15 14 46 46 H 1.09007 * 109.47008 * 295.13885 * 20 18 15 47 47 H 1.08996 * 109.47437 * 55.14104 * 20 18 15 48 48 H 0.97004 * 120.00013 * 359.97438 * 21 20 18 49 49 H 0.97003 * 119.99869 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.58634 * 353.36887 * 30 12 10 51 51 H 1.08997 * 109.58919 * 113.79597 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7930 1.5506 -0.0013 6 6 4.9611 2.5156 1.1741 7 6 4.5673 3.0501 -0.2043 8 7 3.6002 -0.6412 -0.0057 9 6 2.3169 -1.0936 -0.0006 10 6 1.8853 -2.5032 -0.0015 11 8 0.7065 -2.7781 -0.1198 12 7 2.7970 -3.4873 0.1288 13 6 4.2017 -3.1723 0.4224 14 6 4.6317 -3.9683 1.6640 15 6 4.3571 -5.4556 1.4296 16 1 4.9023 -5.7907 0.5472 17 6 4.8183 -6.2571 2.6485 18 6 2.8573 -5.6716 1.2149 19 1 2.3098 -5.3137 2.0869 20 6 2.5791 -7.1625 1.0137 21 7 1.1334 -7.3818 0.9241 22 6 0.6428 -8.6471 0.7420 23 1 1.3216 -9.4835 0.6639 24 6 -0.7272 -8.8549 0.6576 25 7 -1.5545 -7.8358 0.7532 26 14 -1.3964 -10.5811 0.4084 27 1 -0.9715 -11.4447 1.5393 28 1 -2.8796 -10.5336 0.3526 29 1 -0.8702 -11.1371 -0.8641 30 6 2.4062 -4.8952 -0.0262 31 1 -0.3633 1.0277 0.0006 32 1 -0.3633 -0.5134 -0.8902 33 1 -0.3633 -0.5142 0.8898 34 1 5.6965 1.1153 -0.4283 35 1 5.9752 2.7151 1.5203 36 1 4.1937 2.5045 1.9481 37 1 3.5405 3.3911 -0.3370 38 1 5.3223 3.6014 -0.7649 39 1 4.8241 -3.4515 -0.4277 40 1 4.3036 -2.1048 0.6176 41 1 4.0675 -3.6266 2.5317 42 1 5.6968 -3.8183 1.8404 43 1 4.6233 -7.3164 2.4818 44 1 5.8865 -6.1033 2.8015 45 1 4.2730 -5.9222 3.5309 46 1 3.0555 -7.5000 0.0932 47 1 2.9802 -7.7241 1.8574 48 1 0.5237 -6.6305 0.9938 49 1 -2.5118 -7.9811 0.6946 50 1 1.3231 -4.9647 -0.1269 51 1 2.8851 -5.3120 -0.9121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133205319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:41 Heat of formation + Delta-G solvation = 5.802153 kcal Electronic energy + Delta-G solvation = -31304.808894 eV Core-core repulsion = 27206.213715 eV Total energy + Delta-G solvation = -4098.595180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.65599 -41.28368 -39.23057 -38.13957 -36.74129 -36.06409 -34.97574 -33.56070 -33.32315 -31.48193 -29.65757 -28.58577 -27.32841 -25.65706 -25.00027 -24.13863 -23.62531 -23.24130 -22.61395 -22.32441 -20.99881 -20.07147 -19.16478 -18.45765 -18.17025 -17.56542 -17.09495 -16.74664 -16.48055 -16.30830 -15.63112 -15.59482 -15.47300 -15.24813 -15.10983 -14.66608 -14.47863 -14.36427 -14.18818 -14.14154 -14.01269 -13.56748 -13.34707 -13.07957 -13.04396 -12.79251 -12.68790 -12.65934 -12.63069 -12.42902 -12.23492 -12.15372 -11.92938 -11.86959 -11.74838 -11.63354 -11.54019 -11.39625 -11.22222 -10.94144 -10.63957 -9.92831 -9.58377 -8.99734 -7.93668 -5.24142 -0.08755 0.77561 1.27879 1.44728 1.49330 1.55420 1.83574 2.06882 2.55638 2.57819 2.89555 3.38106 3.38591 3.51249 3.65545 3.76122 3.81357 3.86364 3.95435 4.04501 4.05622 4.09967 4.16663 4.28130 4.34392 4.45300 4.48719 4.54302 4.58675 4.70707 4.73868 4.76668 4.78167 4.79626 4.91525 4.93188 4.96761 4.99813 5.05844 5.09061 5.09877 5.19027 5.21431 5.21827 5.30343 5.43189 5.48125 5.55028 5.63616 6.20833 6.26574 6.43190 6.97855 7.31914 8.08234 8.31188 9.29706 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002594 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.850948 B =10790.017550 C =12300.909442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.044 3.956 3 O -0.191 6.191 4 C 0.231 3.769 5 C -0.092 4.092 6 C -0.147 4.147 7 C -0.151 4.151 8 N -0.464 5.464 9 C -0.093 4.093 10 C 0.585 3.415 11 O -0.569 6.569 12 N -0.592 5.592 13 C 0.078 3.922 14 C -0.117 4.117 15 C -0.079 4.079 16 H 0.083 0.917 17 C -0.143 4.143 18 C -0.086 4.086 19 H 0.049 0.951 20 C 0.159 3.841 21 N -0.747 5.747 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.978 3.022 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.276 1.276 30 C 0.128 3.872 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.050 0.950 42 H 0.107 0.893 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.035 0.965 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.057 0.943 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.705 25.521 0.173 32.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 O -0.079 6.079 4 C 0.023 3.977 5 C -0.111 4.111 6 C -0.185 4.185 7 C -0.189 4.189 8 N -0.193 5.193 9 C -0.212 4.212 10 C 0.374 3.626 11 O -0.449 6.449 12 N -0.323 5.323 13 C -0.043 4.043 14 C -0.155 4.155 15 C -0.098 4.098 16 H 0.101 0.899 17 C -0.201 4.201 18 C -0.106 4.106 19 H 0.067 0.933 20 C 0.032 3.968 21 N -0.390 5.390 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.806 3.194 27 H -0.201 1.201 28 H -0.223 1.223 29 H -0.202 1.202 30 C 0.005 3.995 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.156 0.844 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.053 0.947 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.663 24.805 0.076 31.654 hybrid contribution -1.963 -0.794 -0.189 2.126 sum 17.700 24.012 -0.113 29.831 Atomic orbital electron populations 1.20527 0.81156 1.05547 1.05075 1.24000 0.95876 0.82937 0.98432 1.84307 1.18059 1.35601 1.69932 1.26038 0.83793 0.89810 0.98074 1.20631 0.91026 0.90068 1.09333 1.23266 1.05210 0.98766 0.91283 1.23244 1.04499 0.91367 0.99779 1.70422 1.20164 1.09061 1.19636 1.21267 0.89949 0.94617 1.15319 1.17236 0.84959 0.83744 0.76668 1.90835 1.17888 1.83635 1.52518 1.48014 1.10508 1.05378 1.68373 1.22915 0.78643 1.04897 0.97874 1.22022 1.02913 0.93578 0.97010 1.21107 0.92582 0.96153 0.99967 0.89881 1.21846 1.01809 0.99760 0.96638 1.21537 0.97897 0.94561 0.96581 0.93282 1.20898 0.84257 0.93484 0.98148 1.42667 1.02341 1.06108 1.87896 1.19632 0.90991 0.86846 1.40275 0.90306 1.25671 0.96494 1.01338 1.03726 1.69865 1.02015 1.31347 1.59026 0.85152 0.76517 0.79380 0.78342 1.20104 1.22294 1.20201 1.21485 1.00435 0.79481 0.98086 0.87122 0.88809 0.88980 0.81747 0.84624 0.89046 0.88593 0.84711 0.90782 0.84351 0.93077 0.87480 0.92875 0.90201 0.93642 0.95815 0.94697 0.79821 0.94109 0.92426 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 9.16 71.24 0.65 -0.80 16 2 C 0.04 1.14 7.44 25.19 0.19 1.33 16 3 O -0.19 -4.13 10.40 0.42 0.00 -4.12 16 4 C 0.23 4.59 7.80 88.39 0.69 5.28 16 5 C -0.09 -0.97 6.33 -11.54 -0.07 -1.04 16 6 C -0.15 -0.97 10.23 30.59 0.31 -0.66 16 7 C -0.15 -0.96 10.16 30.59 0.31 -0.64 16 8 N -0.46 -11.60 7.82 -293.03 -2.29 -13.89 16 9 C -0.09 -2.81 6.67 40.41 0.27 -2.54 16 10 C 0.59 21.73 7.67 86.66 0.66 22.40 16 11 O -0.57 -25.25 15.05 -4.06 -0.06 -25.31 16 12 N -0.59 -20.12 2.97 -821.95 -2.44 -22.56 16 13 C 0.08 1.98 6.14 86.51 0.53 2.51 16 14 C -0.12 -2.64 5.38 30.82 0.17 -2.47 16 15 C -0.08 -2.05 2.23 -10.76 -0.02 -2.08 16 16 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.14 -3.38 8.82 71.98 0.63 -2.75 16 18 C -0.09 -3.10 1.92 -10.72 -0.02 -3.12 16 19 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 20 C 0.16 6.72 5.41 86.38 0.47 7.19 16 21 N -0.75 -41.04 5.38 -343.45 -1.85 -42.88 16 22 C -0.25 -14.49 9.99 84.04 0.84 -13.65 16 23 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 24 C -0.08 -4.89 5.50 84.87 0.47 -4.42 16 25 N -0.97 -63.72 13.06 21.65 0.28 -63.44 16 26 Si 0.98 48.36 29.55 68.60 2.03 50.38 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 30 C 0.13 4.91 5.53 86.36 0.48 5.39 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.24 7.99 -2.39 -0.02 2.22 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.79 7.94 -2.39 -0.02 0.78 16 38 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.14 3.45 4.10 -20.34 -0.08 3.37 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.38 6.30 -2.39 -0.02 1.36 16 44 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.04 1.45 6.15 -2.39 -0.01 1.43 16 48 H 0.37 22.29 6.89 -92.71 -0.64 21.65 16 49 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 50 H 0.06 2.77 6.20 -2.39 -0.01 2.75 16 51 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -79.15 405.73 2.46 -76.69 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.23 Total: 35.21 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.55 Total: 9.92 kcal Atomic # 7 Polarization: -136.48 SS G_CDS: -6.29 Total: -142.77 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -79.15 2.46 -76.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.493 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds