Wall clock time and date at job start Wed Apr 1 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52342 * 2 1 4 4 C 1.34061 * 108.22215 * 180.26878 * 3 2 1 5 5 C 1.50693 * 125.37692 * 179.70817 * 4 3 2 6 6 C 1.53001 * 117.50074 * 8.77465 * 5 4 3 7 7 C 1.52996 * 117.50344 * 300.11354 * 5 4 3 8 8 N 1.29934 * 109.24106 * 359.73441 * 4 3 2 9 9 C 1.36062 * 108.47960 * 359.97438 * 8 4 3 10 10 C 1.47422 * 126.44998 * 180.02562 * 9 8 4 11 11 O 1.21612 * 120.00052 * 174.34206 * 10 9 8 12 12 N 1.34783 * 119.99763 * 354.61557 * 10 9 8 13 13 C 1.46920 * 120.62810 * 4.18069 * 12 10 9 14 14 C 1.52763 * 109.00832 * 233.58318 * 13 12 10 15 15 C 1.53040 * 109.38290 * 305.58884 * 14 13 12 16 16 H 1.08994 * 109.46190 * 301.22090 * 15 14 13 17 17 C 1.52997 * 109.45019 * 181.25111 * 15 14 13 18 18 C 1.53047 * 109.53452 * 61.24207 * 15 14 13 19 19 H 1.08996 * 109.49698 * 58.58811 * 18 15 14 20 20 C 1.53006 * 109.52212 * 178.66953 * 18 15 14 21 21 N 1.46493 * 109.47053 * 184.85466 * 20 18 15 22 22 C 1.36939 * 120.00282 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99422 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00438 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99496 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00200 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46845 * 89.99824 * 26 24 22 28 28 H 1.48497 * 109.47163 * 209.99648 * 26 24 22 29 29 H 1.48499 * 109.47034 * 330.00045 * 26 24 22 30 30 C 1.46928 * 120.62988 * 184.46292 * 12 10 9 31 31 H 1.09003 * 109.47149 * 270.19065 * 1 2 3 32 32 H 1.09000 * 109.47384 * 30.18108 * 1 2 3 33 33 H 1.08998 * 109.47759 * 150.18848 * 1 2 3 34 34 H 1.09000 * 115.55100 * 154.44279 * 5 4 3 35 35 H 1.08998 * 117.49873 * 359.97438 * 6 5 4 36 36 H 1.09000 * 117.50193 * 145.01998 * 6 5 4 37 37 H 1.08997 * 117.50290 * 214.98334 * 7 5 4 38 38 H 1.09005 * 117.49994 * 359.97438 * 7 5 4 39 39 H 1.09001 * 109.58970 * 353.42057 * 13 12 10 40 40 H 1.09001 * 109.58870 * 113.84972 * 13 12 10 41 41 H 1.08998 * 109.56724 * 185.55731 * 14 13 12 42 42 H 1.09003 * 109.38515 * 65.51562 * 14 13 12 43 43 H 1.09003 * 109.47035 * 299.94174 * 17 15 14 44 44 H 1.08996 * 109.47351 * 59.94067 * 17 15 14 45 45 H 1.08997 * 109.47344 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.46696 * 304.84887 * 20 18 15 47 47 H 1.08997 * 109.47531 * 64.84975 * 20 18 15 48 48 H 0.97010 * 120.00335 * 359.97438 * 21 20 18 49 49 H 0.97000 * 119.99219 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58012 * 246.15688 * 30 12 10 51 51 H 1.09000 * 109.58565 * 6.57771 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6579 -0.0060 5 6 4.7929 1.5505 -0.0143 6 6 4.5688 3.0501 0.1909 7 6 4.9526 2.5152 -1.1911 8 7 3.6001 -0.6412 -0.0040 9 6 2.3169 -1.0936 0.0040 10 6 1.8852 -2.5032 0.0093 11 8 0.7056 -2.7774 0.1202 12 7 2.7984 -3.4881 -0.1033 13 6 4.2339 -3.1772 -0.1401 14 6 4.8505 -3.8202 -1.3810 15 6 4.5307 -5.3168 -1.3898 16 1 4.9255 -5.7778 -0.4845 17 6 5.1740 -5.9680 -2.6157 18 6 3.0142 -5.5157 -1.4436 19 1 2.6155 -5.0336 -2.3362 20 6 2.6959 -7.0117 -1.4859 21 7 1.2528 -7.1993 -1.6540 22 6 0.7296 -8.4631 -1.7197 23 1 1.3811 -9.3215 -1.6480 24 6 -0.6378 -8.6410 -1.8785 25 7 -1.4318 -7.5947 -1.9654 26 14 -1.3513 -10.3649 -1.9689 27 1 -1.7010 -10.8281 -0.6020 28 1 -2.5719 -10.3518 -2.8144 29 1 -0.3481 -11.2853 -2.5619 30 6 2.3770 -4.8925 -0.1978 31 1 -0.3633 0.0034 1.0277 32 1 -0.3634 0.8883 -0.5166 33 1 -0.3634 -0.8916 -0.5109 34 1 5.6995 1.1151 0.4060 35 1 3.5431 3.3910 0.3314 36 1 5.3280 3.6012 0.7458 37 1 5.9641 2.7146 -1.5448 38 1 4.1796 2.5039 -1.9596 39 1 4.3729 -2.0970 -0.1826 40 1 4.7169 -3.5751 0.7524 41 1 5.9313 -3.6793 -1.3664 42 1 4.4349 -3.3541 -2.2745 43 1 4.7788 -5.5074 -3.5212 44 1 6.2540 -5.8265 -2.5777 45 1 4.9468 -7.0341 -2.6221 46 1 3.2220 -7.4715 -2.3225 47 1 3.0168 -7.4779 -0.5544 48 1 0.6677 -6.4283 -1.7188 49 1 -2.3874 -7.7190 -2.0760 50 1 2.7055 -5.4329 0.6900 51 1 1.2912 -4.9435 -0.2782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133205320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:44 Heat of formation + Delta-G solvation = 30.105906 kcal Electronic energy + Delta-G solvation = -31363.306911 eV Core-core repulsion = 27265.765621 eV Total energy + Delta-G solvation = -4097.541290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.73434 -39.97121 -37.94428 -37.61792 -35.40164 -34.62925 -33.55149 -32.43024 -31.74831 -29.72370 -28.56000 -27.53061 -25.67950 -24.58811 -23.35091 -23.03438 -22.99568 -22.47061 -21.42223 -21.10409 -19.66897 -18.98992 -17.45796 -17.24865 -16.94941 -16.75728 -15.80021 -15.67704 -14.96811 -14.91820 -14.76547 -14.33583 -14.09996 -13.81809 -13.64268 -13.45654 -13.33126 -13.13178 -12.99876 -12.90078 -12.65359 -12.44408 -12.39996 -12.12325 -11.90991 -11.80529 -11.62638 -11.45047 -11.13883 -11.12604 -10.95152 -10.89436 -10.71172 -10.63018 -10.35206 -10.09489 -10.04093 -9.94111 -9.57370 -9.34161 -8.93149 -8.78483 -8.31936 -6.81828 -5.66408 -2.95488 0.91812 1.72106 2.14693 3.05020 3.18001 3.40093 3.48975 3.49594 3.53946 3.56067 4.16629 4.31799 4.38697 4.46794 4.65481 4.68312 4.93205 4.96591 5.06694 5.08131 5.08945 5.19725 5.26591 5.33054 5.35098 5.46098 5.47042 5.52926 5.54928 5.66174 5.66914 5.75387 5.80719 5.84881 5.91691 5.94269 6.06258 6.10956 6.16580 6.27400 6.32909 6.43100 6.46562 6.56677 6.65676 6.84366 6.91850 6.99288 7.25016 7.64224 7.77956 8.30681 8.51695 9.62477 10.21307 10.55656 11.56091 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002634 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.011278 B =10626.802012 C =12102.133385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.041 3.959 3 O -0.195 6.195 4 C 0.221 3.779 5 C -0.073 4.073 6 C -0.163 4.163 7 C -0.157 4.157 8 N -0.448 5.448 9 C -0.064 4.064 10 C 0.595 3.405 11 O -0.527 6.527 12 N -0.590 5.590 13 C 0.061 3.939 14 C -0.123 4.123 15 C -0.086 4.086 16 H 0.069 0.931 17 C -0.147 4.147 18 C -0.100 4.100 19 H 0.072 0.928 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.120 3.880 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.066 0.934 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.241 23.808 3.970 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 O -0.083 6.083 4 C 0.014 3.986 5 C -0.092 4.092 6 C -0.200 4.200 7 C -0.195 4.195 8 N -0.177 5.177 9 C -0.184 4.184 10 C 0.381 3.619 11 O -0.404 6.404 12 N -0.321 5.321 13 C -0.062 4.062 14 C -0.161 4.161 15 C -0.105 4.105 16 H 0.088 0.912 17 C -0.204 4.204 18 C -0.120 4.120 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.377 5.377 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 C -0.002 4.002 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.166 0.834 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.166 0.834 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.116 23.109 4.029 28.460 hybrid contribution -1.033 -0.526 -0.067 1.161 sum 15.083 22.583 3.962 27.444 Atomic orbital electron populations 1.20618 0.82205 1.05517 1.04854 1.23743 0.95108 0.82958 0.99661 1.84270 1.17689 1.36370 1.69943 1.25144 0.83191 0.89844 1.00437 1.20286 0.92254 0.89550 1.07068 1.23134 1.04139 0.93068 0.99698 1.23163 1.04188 1.00487 0.91683 1.70207 1.21103 1.07779 1.18628 1.21600 0.88326 0.95823 1.12608 1.16778 0.85381 0.82348 0.77382 1.90847 1.16303 1.82683 1.50549 1.47924 1.06843 1.06678 1.70639 1.22877 0.79217 1.06744 0.97363 1.21847 1.00191 0.95591 0.98484 1.21127 0.95323 0.95147 0.98944 0.91242 1.21877 0.99357 1.01507 0.97670 1.21698 0.94279 0.97876 0.98107 0.90921 1.20726 0.87245 0.91031 0.97913 1.42423 1.01077 1.06010 1.88234 1.19205 0.90907 0.84945 1.41959 0.91274 1.24751 0.96197 0.97021 1.03075 1.69681 1.03484 1.27775 1.56942 0.86208 0.78533 0.84163 0.77392 1.21781 1.21844 1.20854 1.21783 1.02372 0.78375 0.97640 0.88828 0.90205 0.86665 0.83397 0.87796 0.87116 0.86983 0.88075 0.83367 0.92439 0.91209 0.92028 0.92893 0.93301 0.91755 0.95514 0.96397 0.78151 0.93554 0.91553 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.82 36.01 0.35 -0.44 16 2 C 0.04 0.52 7.44 -35.08 -0.26 0.26 16 3 O -0.20 -2.19 10.40 6.49 0.07 -2.12 16 4 C 0.22 2.33 7.80 -13.08 -0.10 2.23 16 5 C -0.07 -0.47 6.33 -91.78 -0.58 -1.06 16 6 C -0.16 -0.76 10.16 -26.69 -0.27 -1.03 16 7 C -0.16 -0.77 10.24 -26.70 -0.27 -1.04 16 8 N -0.45 -5.72 7.67 -7.66 -0.06 -5.77 16 9 C -0.06 -0.94 6.75 -83.02 -0.56 -1.50 16 10 C 0.59 10.40 7.69 -12.52 -0.10 10.30 16 11 O -0.53 -10.67 14.32 5.27 0.08 -10.60 16 12 N -0.59 -9.72 2.98 -174.30 -0.52 -10.24 16 13 C 0.06 0.81 6.29 -3.93 -0.02 0.79 16 14 C -0.12 -1.53 5.34 -26.83 -0.14 -1.68 16 15 C -0.09 -1.20 2.23 -90.58 -0.20 -1.40 16 16 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.15 -1.91 8.81 37.16 0.33 -1.58 16 18 C -0.10 -1.76 1.92 -90.50 -0.17 -1.93 16 19 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 20 C 0.16 3.31 5.41 -4.04 -0.02 3.29 16 21 N -0.73 -19.35 5.38 -59.91 -0.32 -19.68 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 26 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 30 C 0.12 2.20 5.51 -3.71 -0.02 2.18 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.12 1.46 6.62 -51.93 -0.34 1.12 16 34 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.55 7.94 -51.93 -0.41 0.14 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.15 1.94 3.61 -80.67 -0.29 1.65 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.89 6.30 -51.93 -0.33 0.57 16 46 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 10.85 6.89 -40.82 -0.28 10.57 16 49 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.10 2.27 6.23 -51.93 -0.32 1.95 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -34.48 403.91 -9.45 -43.93 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.19 Total: 9.06 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.30 Total: -0.21 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.18 Total: -64.26 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.14 Total: -12.72 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.48 -9.45 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.038 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds