Wall clock time and date at job start Wed Apr 1 2020 05:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52342 * 2 1 4 4 C 1.34061 * 108.22215 * 180.26878 * 3 2 1 5 5 C 1.50693 * 125.37692 * 179.70817 * 4 3 2 6 6 C 1.53001 * 117.50074 * 8.77465 * 5 4 3 7 7 C 1.52996 * 117.50344 * 300.11354 * 5 4 3 8 8 N 1.29934 * 109.24106 * 359.73441 * 4 3 2 9 9 C 1.36062 * 108.47960 * 359.97438 * 8 4 3 10 10 C 1.47422 * 126.44998 * 180.02562 * 9 8 4 11 11 O 1.21612 * 120.00052 * 174.34206 * 10 9 8 12 12 N 1.34783 * 119.99763 * 354.61557 * 10 9 8 13 13 C 1.46920 * 120.62810 * 4.18069 * 12 10 9 14 14 C 1.52763 * 109.00832 * 233.58318 * 13 12 10 15 15 C 1.53040 * 109.38290 * 305.58884 * 14 13 12 16 16 H 1.08994 * 109.46190 * 301.22090 * 15 14 13 17 17 C 1.52997 * 109.45019 * 181.25111 * 15 14 13 18 18 C 1.53047 * 109.53452 * 61.24207 * 15 14 13 19 19 H 1.08996 * 109.49698 * 58.58811 * 18 15 14 20 20 C 1.53006 * 109.52212 * 178.66953 * 18 15 14 21 21 N 1.46493 * 109.47053 * 184.85466 * 20 18 15 22 22 C 1.36939 * 120.00282 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99422 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00438 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99496 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00200 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46845 * 89.99824 * 26 24 22 28 28 H 1.48497 * 109.47163 * 209.99648 * 26 24 22 29 29 H 1.48499 * 109.47034 * 330.00045 * 26 24 22 30 30 C 1.46928 * 120.62988 * 184.46292 * 12 10 9 31 31 H 1.09003 * 109.47149 * 270.19065 * 1 2 3 32 32 H 1.09000 * 109.47384 * 30.18108 * 1 2 3 33 33 H 1.08998 * 109.47759 * 150.18848 * 1 2 3 34 34 H 1.09000 * 115.55100 * 154.44279 * 5 4 3 35 35 H 1.08998 * 117.49873 * 359.97438 * 6 5 4 36 36 H 1.09000 * 117.50193 * 145.01998 * 6 5 4 37 37 H 1.08997 * 117.50290 * 214.98334 * 7 5 4 38 38 H 1.09005 * 117.49994 * 359.97438 * 7 5 4 39 39 H 1.09001 * 109.58970 * 353.42057 * 13 12 10 40 40 H 1.09001 * 109.58870 * 113.84972 * 13 12 10 41 41 H 1.08998 * 109.56724 * 185.55731 * 14 13 12 42 42 H 1.09003 * 109.38515 * 65.51562 * 14 13 12 43 43 H 1.09003 * 109.47035 * 299.94174 * 17 15 14 44 44 H 1.08996 * 109.47351 * 59.94067 * 17 15 14 45 45 H 1.08997 * 109.47344 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.46696 * 304.84887 * 20 18 15 47 47 H 1.08997 * 109.47531 * 64.84975 * 20 18 15 48 48 H 0.97010 * 120.00335 * 359.97438 * 21 20 18 49 49 H 0.97000 * 119.99219 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58012 * 246.15688 * 30 12 10 51 51 H 1.09000 * 109.58565 * 6.57771 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6579 -0.0060 5 6 4.7929 1.5505 -0.0143 6 6 4.5688 3.0501 0.1909 7 6 4.9526 2.5152 -1.1911 8 7 3.6001 -0.6412 -0.0040 9 6 2.3169 -1.0936 0.0040 10 6 1.8852 -2.5032 0.0093 11 8 0.7056 -2.7774 0.1202 12 7 2.7984 -3.4881 -0.1033 13 6 4.2339 -3.1772 -0.1401 14 6 4.8505 -3.8202 -1.3810 15 6 4.5307 -5.3168 -1.3898 16 1 4.9255 -5.7778 -0.4845 17 6 5.1740 -5.9680 -2.6157 18 6 3.0142 -5.5157 -1.4436 19 1 2.6155 -5.0336 -2.3362 20 6 2.6959 -7.0117 -1.4859 21 7 1.2528 -7.1993 -1.6540 22 6 0.7296 -8.4631 -1.7197 23 1 1.3811 -9.3215 -1.6480 24 6 -0.6378 -8.6410 -1.8785 25 7 -1.4318 -7.5947 -1.9654 26 14 -1.3513 -10.3649 -1.9689 27 1 -1.7010 -10.8281 -0.6020 28 1 -2.5719 -10.3518 -2.8144 29 1 -0.3481 -11.2853 -2.5619 30 6 2.3770 -4.8925 -0.1978 31 1 -0.3633 0.0034 1.0277 32 1 -0.3634 0.8883 -0.5166 33 1 -0.3634 -0.8916 -0.5109 34 1 5.6995 1.1151 0.4060 35 1 3.5431 3.3910 0.3314 36 1 5.3280 3.6012 0.7458 37 1 5.9641 2.7146 -1.5448 38 1 4.1796 2.5039 -1.9596 39 1 4.3729 -2.0970 -0.1826 40 1 4.7169 -3.5751 0.7524 41 1 5.9313 -3.6793 -1.3664 42 1 4.4349 -3.3541 -2.2745 43 1 4.7788 -5.5074 -3.5212 44 1 6.2540 -5.8265 -2.5777 45 1 4.9468 -7.0341 -2.6221 46 1 3.2220 -7.4715 -2.3225 47 1 3.0168 -7.4779 -0.5544 48 1 0.6677 -6.4283 -1.7188 49 1 -2.3874 -7.7190 -2.0760 50 1 2.7055 -5.4329 0.6900 51 1 1.2912 -4.9435 -0.2782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133205320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:44 Heat of formation + Delta-G solvation = 7.637000 kcal Electronic energy + Delta-G solvation = -31364.281235 eV Core-core repulsion = 27265.765621 eV Total energy + Delta-G solvation = -4098.515615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.67080 -41.29714 -39.25297 -38.13645 -36.77086 -36.08224 -34.97493 -33.57170 -33.31743 -31.49991 -29.67610 -28.59437 -27.33224 -25.67495 -25.01292 -24.12463 -23.63252 -23.24241 -22.61638 -22.38013 -20.97306 -20.09142 -19.17610 -18.45500 -18.16278 -17.58849 -17.10346 -16.75080 -16.49844 -16.27328 -15.66648 -15.61791 -15.48177 -15.29364 -15.11721 -14.68880 -14.43795 -14.40682 -14.22577 -14.11886 -13.99681 -13.57571 -13.34775 -13.08385 -13.05473 -12.81844 -12.71039 -12.67703 -12.64498 -12.42999 -12.21468 -12.16974 -11.92486 -11.86648 -11.75383 -11.61893 -11.53030 -11.36869 -11.22332 -10.95508 -10.49536 -9.93994 -9.58805 -9.00296 -7.94479 -5.24865 -0.08885 0.76393 1.27083 1.44636 1.47932 1.56252 1.82557 2.08315 2.55134 2.55737 2.89653 3.37852 3.38277 3.50177 3.65236 3.75841 3.80858 3.86855 3.95079 4.05229 4.07449 4.10378 4.15562 4.28555 4.32846 4.45077 4.49231 4.53567 4.58684 4.69164 4.73182 4.76343 4.78307 4.78661 4.92371 4.93057 4.96913 5.01401 5.06225 5.09808 5.10028 5.20469 5.21506 5.21919 5.34040 5.43815 5.48007 5.54926 5.72746 6.20365 6.26143 6.44377 6.97741 7.31374 8.07324 8.30303 9.29170 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002634 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.011278 B =10626.802012 C =12102.133385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 O -0.191 6.191 4 C 0.234 3.766 5 C -0.092 4.092 6 C -0.150 4.150 7 C -0.149 4.149 8 N -0.463 5.463 9 C -0.092 4.092 10 C 0.585 3.415 11 O -0.570 6.570 12 N -0.590 5.590 13 C 0.057 3.943 14 C -0.114 4.114 15 C -0.080 4.080 16 H 0.082 0.918 17 C -0.143 4.143 18 C -0.086 4.086 19 H 0.049 0.951 20 C 0.159 3.841 21 N -0.747 5.747 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.978 3.022 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.266 1.266 30 C 0.127 3.873 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.036 0.964 47 H 0.024 0.976 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.070 0.930 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.571 25.127 4.136 32.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.011 4.011 3 O -0.078 6.078 4 C 0.026 3.974 5 C -0.111 4.111 6 C -0.188 4.188 7 C -0.187 4.187 8 N -0.192 5.192 9 C -0.210 4.210 10 C 0.374 3.626 11 O -0.450 6.450 12 N -0.320 5.320 13 C -0.064 4.064 14 C -0.152 4.152 15 C -0.099 4.099 16 H 0.100 0.900 17 C -0.200 4.200 18 C -0.106 4.106 19 H 0.068 0.932 20 C 0.032 3.968 21 N -0.390 5.390 22 C -0.376 4.376 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.806 3.194 27 H -0.214 1.214 28 H -0.222 1.222 29 H -0.190 1.190 30 C 0.005 3.995 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.184 0.816 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.174 0.826 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.533 24.410 4.195 31.543 hybrid contribution -1.980 -0.821 -0.101 2.146 sum 17.553 23.589 4.095 29.687 Atomic orbital electron populations 1.20637 0.81182 1.05618 1.05588 1.23992 0.95871 0.82869 0.98379 1.84309 1.17999 1.35578 1.69950 1.26077 0.83827 0.89796 0.97686 1.20655 0.91024 0.90106 1.09301 1.23258 1.04564 0.91325 0.99626 1.23276 1.05227 0.98881 0.91294 1.70071 1.19948 1.08937 1.20252 1.21254 0.89895 0.94606 1.15268 1.17237 0.84988 0.83753 0.76660 1.90814 1.18034 1.83617 1.52529 1.48023 1.08280 1.05576 1.70148 1.23143 0.77141 1.07653 0.98495 1.21813 1.02188 0.93863 0.97321 1.21118 0.91889 0.96713 1.00176 0.90011 1.21842 1.01165 1.00409 0.96602 1.21542 0.97330 0.95181 0.96512 0.93249 1.20897 0.84271 0.93497 0.98106 1.42671 1.03244 1.04861 1.88231 1.19666 0.91372 0.86127 1.40449 0.90298 1.25670 0.96744 1.01164 1.03674 1.69875 1.03386 1.30204 1.58808 0.85078 0.77611 0.79431 0.77264 1.21393 1.22236 1.19050 1.21482 0.99712 0.80113 0.98210 0.87738 0.87221 0.89291 0.81585 0.88569 0.84635 0.84631 0.89145 0.82552 0.91149 0.87552 0.93184 0.93615 0.90211 0.92901 0.94647 0.95856 0.79839 0.94110 0.91169 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 9.82 71.24 0.70 -0.91 16 2 C 0.05 1.17 7.44 25.19 0.19 1.36 16 3 O -0.19 -4.09 10.40 0.31 0.00 -4.09 16 4 C 0.23 4.60 7.80 88.39 0.69 5.29 16 5 C -0.09 -0.95 6.33 -11.54 -0.07 -1.02 16 6 C -0.15 -0.92 10.16 30.62 0.31 -0.61 16 7 C -0.15 -1.00 10.24 30.62 0.31 -0.69 16 8 N -0.46 -11.51 7.67 -293.03 -2.25 -13.76 16 9 C -0.09 -2.78 6.75 40.41 0.27 -2.51 16 10 C 0.59 21.78 7.69 86.66 0.67 22.45 16 11 O -0.57 -25.21 14.32 -4.07 -0.06 -25.27 16 12 N -0.59 -20.21 2.98 -823.61 -2.45 -22.66 16 13 C 0.06 1.46 6.29 86.22 0.54 2.00 16 14 C -0.11 -2.60 5.34 30.53 0.16 -2.43 16 15 C -0.08 -2.10 2.23 -10.77 -0.02 -2.12 16 16 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.14 -3.40 8.81 71.98 0.63 -2.76 16 18 C -0.09 -3.11 1.92 -10.71 -0.02 -3.13 16 19 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 20 C 0.16 6.75 5.41 86.38 0.47 7.22 16 21 N -0.75 -41.04 5.38 -343.45 -1.85 -42.88 16 22 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 24 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 25 N -0.97 -63.65 13.06 21.65 0.28 -63.36 16 26 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 30 C 0.13 4.94 5.51 86.36 0.48 5.42 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 2.47 6.62 -2.39 -0.02 2.45 16 34 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 0.78 7.94 -2.39 -0.02 0.76 16 36 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.16 3.91 3.61 -59.14 -0.21 3.70 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.38 6.30 -2.39 -0.02 1.36 16 46 H 0.04 1.47 6.15 -2.39 -0.01 1.46 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.37 22.24 6.89 -92.70 -0.64 21.60 16 49 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 50 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.06 2.76 6.23 -2.39 -0.01 2.75 16 Total: -1.00 -79.09 403.91 2.42 -76.67 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.10 Total: 35.39 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.61 Total: 9.55 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -6.26 Total: -142.66 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.06 Total: -29.35 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -79.09 2.42 -76.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133205320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.303 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds